Wall clock time and date at job start Mon Mar 30 2020 01:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45201 * 109.47056 * 2 1 4 4 C 1.34229 * 117.00143 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00107 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00261 * 179.72393 * 4 3 2 7 7 C 1.52998 * 109.46966 * 60.27556 * 6 4 3 8 8 C 1.52997 * 109.46883 * 300.27994 * 6 4 3 9 9 C 1.53000 * 109.47167 * 179.97438 * 8 6 4 10 10 C 1.53005 * 109.47249 * 59.99566 * 9 8 6 11 11 N 1.46496 * 109.46869 * 60.00356 * 10 9 8 12 12 C 1.46495 * 120.00418 * 117.56349 * 11 10 9 13 13 C 1.36944 * 120.00049 * 297.55971 * 11 10 9 14 14 H 1.08000 * 120.00096 * 5.76637 * 13 11 10 15 15 C 1.38811 * 120.00079 * 185.75950 * 13 11 10 16 16 N 1.31617 * 120.00001 * 351.16058 * 15 13 11 17 17 Si 1.86802 * 119.99833 * 171.16065 * 15 13 11 18 18 H 1.48495 * 109.47312 * 90.00386 * 17 15 13 19 19 H 1.48505 * 109.46962 * 210.00277 * 17 15 13 20 20 H 1.48500 * 109.47036 * 329.99737 * 17 15 13 21 21 C 1.52998 * 109.47108 * 300.00556 * 10 9 8 22 22 C 1.52998 * 109.47241 * 180.27593 * 6 4 3 23 23 H 1.09001 * 109.47262 * 299.99950 * 1 2 3 24 24 H 1.09007 * 109.46752 * 59.99731 * 1 2 3 25 25 H 1.09000 * 109.46926 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47262 * 240.00050 * 2 1 3 27 27 H 1.08992 * 109.47094 * 119.99884 * 2 1 3 28 28 H 1.09005 * 109.47211 * 60.00150 * 7 6 4 29 29 H 1.08998 * 109.47368 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.47408 * 300.00600 * 7 6 4 31 31 H 1.09007 * 109.47324 * 299.99689 * 8 6 4 32 32 H 1.08997 * 109.47582 * 59.99800 * 8 6 4 33 33 H 1.09007 * 109.46866 * 300.00118 * 9 8 6 34 34 H 1.08998 * 109.47948 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47306 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.46887 * 358.88351 * 12 11 10 37 37 H 1.08999 * 109.47662 * 118.88811 * 12 11 10 38 38 H 1.09003 * 109.47626 * 238.89195 * 12 11 10 39 39 H 0.97002 * 120.00255 * 179.97438 * 16 15 13 40 40 H 1.09007 * 109.47254 * 299.99599 * 21 10 9 41 41 H 1.08997 * 109.47300 * 179.97438 * 21 10 9 42 42 H 1.08997 * 109.47305 * 300.00241 * 22 6 4 43 43 H 1.09007 * 109.46888 * 60.00359 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 -0.0057 7 6 3.4534 3.6883 1.2428 8 6 3.4449 3.6806 -1.2556 9 6 4.0291 5.0946 -1.2617 10 6 5.5571 5.0151 -1.2663 11 7 6.0050 4.2966 -2.4618 12 6 6.8361 4.9777 -3.4575 13 6 5.6469 2.9881 -2.6486 14 1 4.9592 2.5134 -1.9643 15 6 6.1675 2.2718 -3.7176 16 7 6.8638 2.8904 -4.6475 17 14 5.8799 0.4298 -3.8362 18 1 4.6292 0.1719 -4.5941 19 1 7.0240 -0.2056 -4.5382 20 1 5.7581 -0.1411 -2.4708 21 6 6.0329 4.2720 -0.0164 22 6 5.4486 2.8574 -0.0107 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7924 3.1588 2.1333 29 1 3.8697 4.6956 1.2381 30 1 2.3649 3.7453 1.2464 31 1 3.7778 3.1457 -2.1452 32 1 2.3564 3.7376 -1.2521 33 1 3.6959 5.6292 -0.3721 34 1 3.6905 5.6239 -2.1523 35 1 5.9733 6.0225 -1.2702 36 1 6.9996 6.0104 -3.1491 37 1 7.7955 4.4671 -3.5407 38 1 6.3316 4.9627 -4.4236 39 1 7.2280 2.3898 -5.3943 40 1 5.6996 4.8066 0.8731 41 1 7.1214 4.2149 -0.0199 42 1 5.7876 2.3280 0.8798 43 1 5.7815 2.3225 -0.9002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171956431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:13 Heat of formation + Delta-G solvation = -49.686130 kcal Electronic energy + Delta-G solvation = -23104.478237 eV Core-core repulsion = 19958.308526 eV Total energy + Delta-G solvation = -3146.169710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.19135 -40.28042 -37.66904 -36.31424 -33.74301 -32.56679 -31.50496 -31.01446 -29.09553 -27.00845 -25.62899 -24.13501 -23.40406 -23.11368 -21.44302 -19.65764 -18.88069 -18.38896 -17.70821 -17.48801 -16.41668 -15.76526 -15.60414 -15.41118 -15.13795 -14.90441 -14.32294 -14.25196 -13.75327 -13.65647 -13.59731 -13.22036 -13.04513 -12.91039 -12.86256 -12.80943 -12.56833 -12.45739 -12.42234 -12.21398 -12.12041 -11.88774 -11.76875 -11.54394 -11.42013 -10.94749 -10.81720 -10.51128 -9.91578 -8.78523 -7.70635 -5.03501 1.19316 1.32537 1.38261 1.50276 1.71700 2.49457 3.35037 3.58013 3.73080 3.81974 3.95386 4.02739 4.07587 4.19740 4.31267 4.40473 4.53354 4.55185 4.70041 4.79583 4.85313 4.88174 4.90198 4.91320 5.00098 5.06294 5.11601 5.13148 5.22581 5.23963 5.37209 5.41240 5.53101 5.58275 5.61038 5.69204 5.80085 5.87636 5.96777 6.39473 6.76174 7.26546 8.03263 8.39591 9.28955 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016933 B = 0.009014 C = 0.006742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.161295 B = 3105.675515 C = 4152.267755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.046 3.954 3 O -0.354 6.354 4 C 0.465 3.535 5 O -0.544 6.544 6 C -0.039 4.039 7 C -0.133 4.133 8 C -0.132 4.132 9 C -0.111 4.111 10 C 0.161 3.839 11 N -0.618 5.618 12 C 0.183 3.817 13 C -0.231 4.231 14 H 0.131 0.869 15 C -0.067 4.067 16 N -0.943 5.943 17 Si 0.921 3.079 18 H -0.291 1.291 19 H -0.296 1.296 20 H -0.279 1.279 21 C -0.110 4.110 22 C -0.134 4.134 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.024 0.976 37 H 0.007 0.993 38 H 0.012 0.988 39 H 0.237 0.763 40 H 0.090 0.910 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.629 2.754 12.847 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 O -0.270 6.270 4 C 0.310 3.690 5 O -0.433 6.433 6 C -0.040 4.040 7 C -0.190 4.190 8 C -0.169 4.169 9 C -0.150 4.150 10 C 0.055 3.945 11 N -0.342 5.342 12 C 0.039 3.961 13 C -0.360 4.360 14 H 0.147 0.853 15 C -0.259 4.259 16 N -0.595 5.595 17 Si 0.752 3.248 18 H -0.218 1.218 19 H -0.222 1.222 20 H -0.205 1.205 21 C -0.148 4.148 22 C -0.171 4.171 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.118 0.882 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.025 0.975 38 H 0.031 0.969 39 H 0.047 0.953 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.368 2.380 12.716 17.222 hybrid contribution 0.474 -1.838 -0.838 2.075 sum -10.894 0.542 11.878 16.127 Atomic orbital electron populations 1.21798 0.89610 1.04404 1.03945 1.23300 0.97706 0.79863 1.01889 1.86508 1.23856 1.33052 1.83625 1.24511 0.80582 0.93338 0.70585 1.90643 1.61341 1.44537 1.46800 1.20553 0.95963 0.87225 1.00244 1.21934 1.02435 1.01327 0.93317 1.22120 1.00060 0.97884 0.96810 1.21876 0.96236 0.95033 1.01888 1.20731 0.93633 0.94506 0.85639 1.44352 1.59193 1.09680 1.20947 1.20725 0.93675 0.90815 0.90926 1.20617 1.19763 0.87990 1.07594 0.85270 1.25370 1.02041 0.99678 0.98803 1.70386 1.42897 1.33276 1.12957 0.85898 0.76703 0.84719 0.77488 1.21815 1.22227 1.20504 1.21846 0.99365 0.94847 0.98778 1.22194 0.91893 0.99566 1.03487 0.90400 0.91522 0.88183 0.93032 0.91186 0.92287 0.88528 0.90494 0.90309 0.91064 0.88928 0.92892 0.90711 0.95738 0.97459 0.96899 0.95251 0.89177 0.93580 0.93543 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 10.29 71.98 0.74 -1.70 16 2 C 0.05 1.22 6.19 71.98 0.45 1.66 16 3 O -0.35 -11.15 10.03 -51.40 -0.52 -11.66 16 4 C 0.47 17.28 6.37 71.24 0.45 17.74 16 5 O -0.54 -24.22 15.73 21.96 0.35 -23.88 16 6 C -0.04 -1.28 0.46 -52.93 -0.02 -1.31 16 7 C -0.13 -3.13 7.71 71.98 0.56 -2.58 16 8 C -0.13 -4.55 4.29 30.59 0.13 -4.42 16 9 C -0.11 -3.45 5.35 30.60 0.16 -3.28 16 10 C 0.16 5.78 3.29 44.99 0.15 5.93 16 11 N -0.62 -29.42 2.87 -702.79 -2.02 -31.43 16 12 C 0.18 9.11 9.01 127.77 1.15 10.26 16 13 C -0.23 -12.19 5.56 84.03 0.47 -11.72 16 14 H 0.13 6.55 2.14 -2.91 -0.01 6.55 16 15 C -0.07 -3.85 5.44 84.86 0.46 -3.39 16 16 N -0.94 -57.19 9.48 21.65 0.21 -56.98 16 17 Si 0.92 48.53 29.56 68.60 2.03 50.56 16 18 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 19 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 20 H -0.28 -15.05 7.11 99.48 0.71 -14.34 16 21 C -0.11 -3.63 5.34 30.61 0.16 -3.46 16 22 C -0.13 -5.12 3.65 30.61 0.11 -5.01 16 23 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 24 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 27 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 28 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.10 1.90 4.81 -2.39 -0.01 1.89 16 30 H 0.08 1.59 8.12 -2.38 -0.02 1.58 16 31 H 0.08 3.50 4.26 -2.38 -0.01 3.49 16 32 H 0.07 2.18 8.11 -2.39 -0.02 2.16 16 33 H 0.09 2.13 6.43 -2.38 -0.02 2.12 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 2.41 7.55 -2.39 -0.02 2.40 16 36 H 0.02 1.02 7.55 -2.39 -0.02 1.00 16 37 H 0.01 0.39 7.03 -2.39 -0.02 0.37 16 38 H 0.01 0.69 7.07 -2.39 -0.02 0.68 16 39 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 40 H 0.09 2.25 6.43 -2.38 -0.02 2.23 16 41 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 43 H 0.09 4.34 4.01 -2.38 -0.01 4.33 16 Total: -1.00 -68.92 316.98 6.01 -62.91 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.00 Total: 11.78 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 4.97 Total: -1.29 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -1.81 Total: -88.42 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.17 Total: -35.54 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -68.92 6.01 -62.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171956431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.223 kcal (2) G-P(sol) polarization free energy of solvation -68.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds