Wall clock time and date at job start Mon Mar 30 2020 01:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45195 * 109.46912 * 2 1 4 4 C 1.34238 * 116.99757 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99688 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99914 * 180.02562 * 4 3 2 7 7 C 1.53000 * 115.55234 * 294.45945 * 6 4 3 8 8 N 1.46900 * 109.47235 * 299.46298 * 7 6 4 9 9 C 1.46897 * 110.99792 * 174.26523 * 8 7 6 10 10 H 1.08996 * 109.47329 * 34.99894 * 9 8 7 11 11 C 1.53005 * 109.47204 * 274.99519 * 9 8 7 12 12 C 1.53008 * 109.46787 * 155.00012 * 9 8 7 13 13 C 1.53004 * 109.46866 * 294.99389 * 12 9 8 14 14 C 1.50701 * 109.46921 * 180.02562 * 13 12 9 15 15 H 1.07997 * 120.00037 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00037 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99559 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00248 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46909 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47488 * 119.99775 * 18 16 14 21 21 H 1.48494 * 109.46985 * 239.99799 * 18 16 14 22 22 C 1.52997 * 117.49890 * 80.13238 * 6 4 3 23 23 C 1.53000 * 117.49679 * 148.79061 * 6 4 3 24 24 H 1.09001 * 109.46999 * 59.99216 * 1 2 3 25 25 H 1.08997 * 109.46890 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46454 * 299.99471 * 1 2 3 27 27 H 1.09003 * 109.46454 * 240.00528 * 2 1 3 28 28 H 1.08996 * 109.47444 * 120.00912 * 2 1 3 29 29 H 1.09000 * 109.47434 * 179.45728 * 7 6 4 30 30 H 1.09006 * 109.46553 * 59.45988 * 7 6 4 31 31 H 1.00898 * 110.99585 * 298.21566 * 8 7 6 32 32 H 1.08999 * 109.46997 * 180.02562 * 11 9 8 33 33 H 1.09002 * 109.46877 * 300.00590 * 11 9 8 34 34 H 1.08993 * 109.46809 * 60.00178 * 11 9 8 35 35 H 1.09001 * 109.47065 * 175.00276 * 12 9 8 36 36 H 1.08996 * 109.46980 * 55.00010 * 12 9 8 37 37 H 1.09001 * 109.46554 * 60.00575 * 13 12 9 38 38 H 1.08996 * 109.47599 * 300.00603 * 13 12 9 39 39 H 0.97003 * 119.99832 * 180.02562 * 17 16 14 40 40 H 1.09001 * 117.49766 * 215.00339 * 22 6 4 41 41 H 1.09008 * 117.49935 * 0.02562 * 22 6 4 42 42 H 1.08999 * 117.49897 * 359.97438 * 23 6 4 43 43 H 1.09004 * 117.49630 * 144.97732 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 6 3.6443 3.7664 -1.2558 8 7 4.2224 3.0912 -2.4254 9 6 3.8606 3.7874 -3.6673 10 1 3.8202 4.8610 -3.4835 11 6 2.4912 3.2999 -4.1450 12 6 4.9099 3.4930 -4.7413 13 6 6.2535 4.0907 -4.3189 14 6 7.2868 3.8012 -5.3770 15 1 7.0125 3.2468 -6.2623 16 6 8.5824 4.2442 -5.2149 17 7 8.9162 4.9198 -4.1370 18 14 9.8631 3.8860 -6.5266 19 1 9.2376 3.1161 -7.6318 20 1 10.4006 5.1651 -7.0561 21 1 10.9692 3.0916 -5.9346 22 6 3.9765 3.6783 1.3375 23 6 5.2638 3.1461 0.7027 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8935 -0.5139 0.8898 29 1 4.0946 4.7530 -1.1464 30 1 2.5679 3.8714 -1.3921 31 1 5.2240 3.0078 -2.3363 32 1 2.2230 3.8161 -5.0667 33 1 2.5317 2.2262 -4.3287 34 1 1.7438 3.5096 -3.3799 35 1 4.5964 3.9358 -5.6866 36 1 5.0136 2.4147 -4.8619 37 1 6.5670 3.6478 -3.3736 38 1 6.1497 5.1690 -4.1983 39 1 9.8276 5.2318 -4.0231 40 1 3.8161 4.7563 1.3227 41 1 3.5970 3.1583 2.2171 42 1 5.7304 2.2762 1.1650 43 1 5.9504 3.8738 0.2701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:21 Heat of formation + Delta-G solvation = -83.561094 kcal Electronic energy + Delta-G solvation = -21115.648039 eV Core-core repulsion = 17968.009399 eV Total energy + Delta-G solvation = -3147.638639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.56327 -38.06816 -36.68990 -35.97171 -33.14153 -31.78800 -31.15250 -29.15368 -26.27855 -25.05541 -24.06029 -22.61158 -22.38444 -21.34562 -19.81792 -19.42898 -17.35621 -16.74237 -16.47984 -16.24202 -15.27911 -14.98494 -14.55027 -14.44164 -14.11515 -13.72688 -13.21138 -12.94603 -12.71418 -12.53383 -12.36696 -12.22858 -11.98136 -11.74475 -11.60540 -11.56260 -11.42489 -11.13186 -10.95108 -10.73626 -10.53611 -10.45657 -10.32194 -10.16067 -10.04757 -9.75099 -9.26597 -9.01328 -8.35473 -8.00776 -6.00344 -4.01861 2.33511 2.65509 3.31764 3.39334 3.43838 3.56101 4.33924 4.46864 4.61315 4.70236 4.80056 4.87141 4.94658 5.04309 5.15021 5.35926 5.48284 5.49310 5.51361 5.57773 5.63161 5.76721 5.78613 5.80932 5.89375 5.89923 5.93570 6.05537 6.18852 6.36988 6.51500 6.52873 6.54913 6.91674 7.09050 7.47263 7.62456 7.79996 7.89353 7.92602 7.99785 8.43254 9.04768 9.62345 11.11001 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021742 B = 0.004140 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.532323 B = 6761.621146 C = 7221.683657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.516 3.484 5 O -0.502 6.502 6 C -0.128 4.128 7 C 0.102 3.898 8 N -0.688 5.688 9 C 0.084 3.916 10 H 0.039 0.961 11 C -0.136 4.136 12 C -0.115 4.115 13 C 0.020 3.980 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.154 4.154 23 C -0.142 4.142 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.356 0.644 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.012 0.988 39 H 0.259 0.741 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.928 -4.079 11.056 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.271 6.271 4 C 0.358 3.642 5 O -0.388 6.388 6 C -0.130 4.130 7 C -0.028 4.028 8 N -0.323 5.323 9 C -0.025 4.025 10 H 0.057 0.943 11 C -0.194 4.194 12 C -0.152 4.152 13 C -0.017 4.017 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.191 4.191 23 C -0.179 4.179 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.178 0.822 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.127 0.873 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.090 -4.781 11.066 20.104 hybrid contribution 1.402 0.427 -0.652 1.604 sum -14.687 -4.354 10.413 18.523 Atomic orbital electron populations 1.21790 0.92796 1.02745 1.03449 1.22982 0.95183 0.80593 1.02491 1.86483 1.24608 1.31876 1.84102 1.22180 0.80199 0.90496 0.71295 1.90647 1.60578 1.42548 1.45049 1.20965 1.03444 0.92017 0.96559 1.21397 1.00691 0.93464 0.87234 1.60515 1.18717 1.52431 1.00678 1.21583 0.95566 0.95216 0.90140 0.94317 1.21794 0.96312 1.01583 0.99732 1.21831 0.95986 1.01136 0.96289 1.19133 0.90285 0.95620 0.96657 1.21274 0.94249 1.34782 1.05282 0.92638 1.25018 0.98601 0.95194 0.95633 1.69966 1.18815 1.37829 1.26924 0.86546 0.81619 0.77969 0.81948 1.19737 1.21078 1.21008 1.23126 1.01532 1.00807 0.93674 1.23183 0.89986 1.03632 1.01114 0.91378 0.90429 0.91676 0.91108 0.91627 0.93713 0.90181 0.82197 0.92964 0.92516 0.93724 0.92676 0.92479 0.96623 0.96957 0.93120 0.87315 0.88268 0.87658 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 37.16 0.38 -0.80 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.35 -4.85 10.22 -39.28 -0.40 -5.25 16 4 C 0.52 7.98 7.03 36.01 0.25 8.23 16 5 O -0.50 -9.15 16.45 -18.74 -0.31 -9.46 16 6 C -0.13 -1.76 2.25 -155.66 -0.35 -2.11 16 7 C 0.10 1.47 5.30 -3.82 -0.02 1.44 16 8 N -0.69 -11.92 6.10 -106.72 -0.65 -12.57 16 9 C 0.08 1.47 2.64 -67.71 -0.18 1.29 16 10 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 11 C -0.14 -2.04 9.41 37.16 0.35 -1.69 16 12 C -0.11 -2.39 4.74 -26.73 -0.13 -2.51 16 13 C 0.02 0.51 4.80 -27.88 -0.13 0.38 16 14 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 18 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 C -0.15 -1.62 9.95 -26.70 -0.27 -1.89 16 23 C -0.14 -1.83 9.77 -26.69 -0.26 -2.09 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.84 8.13 -51.93 -0.42 0.41 16 28 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.04 0.63 8.11 -51.93 -0.42 0.20 16 30 H 0.08 1.09 7.32 -51.93 -0.38 0.71 16 31 H 0.36 6.94 6.53 -39.29 -0.26 6.69 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.61 7.38 -51.93 -0.38 0.22 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.42 6.43 -51.93 -0.33 0.08 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 42 H 0.11 1.39 8.00 -51.93 -0.42 0.97 16 43 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -31.74 357.35 -8.43 -40.17 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.63 Total: 3.27 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -0.53 Total: -12.35 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.09 Total: -38.62 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.71 Total: -14.70 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.74 -8.43 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.394 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds