Wall clock time and date at job start Mon Mar 30 2020 01:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45195 * 109.46912 * 2 1 4 4 C 1.34238 * 116.99757 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99688 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99914 * 180.02562 * 4 3 2 7 7 C 1.53000 * 115.55234 * 294.45945 * 6 4 3 8 8 N 1.46900 * 109.47235 * 299.46298 * 7 6 4 9 9 C 1.46897 * 110.99792 * 174.26523 * 8 7 6 10 10 H 1.08996 * 109.47329 * 34.99894 * 9 8 7 11 11 C 1.53005 * 109.47204 * 274.99519 * 9 8 7 12 12 C 1.53008 * 109.46787 * 155.00012 * 9 8 7 13 13 C 1.53004 * 109.46866 * 294.99389 * 12 9 8 14 14 C 1.50701 * 109.46921 * 180.02562 * 13 12 9 15 15 H 1.07997 * 120.00037 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00037 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99559 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00248 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46909 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47488 * 119.99775 * 18 16 14 21 21 H 1.48494 * 109.46985 * 239.99799 * 18 16 14 22 22 C 1.52997 * 117.49890 * 80.13238 * 6 4 3 23 23 C 1.53000 * 117.49679 * 148.79061 * 6 4 3 24 24 H 1.09001 * 109.46999 * 59.99216 * 1 2 3 25 25 H 1.08997 * 109.46890 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46454 * 299.99471 * 1 2 3 27 27 H 1.09003 * 109.46454 * 240.00528 * 2 1 3 28 28 H 1.08996 * 109.47444 * 120.00912 * 2 1 3 29 29 H 1.09000 * 109.47434 * 179.45728 * 7 6 4 30 30 H 1.09006 * 109.46553 * 59.45988 * 7 6 4 31 31 H 1.00898 * 110.99585 * 298.21566 * 8 7 6 32 32 H 1.08999 * 109.46997 * 180.02562 * 11 9 8 33 33 H 1.09002 * 109.46877 * 300.00590 * 11 9 8 34 34 H 1.08993 * 109.46809 * 60.00178 * 11 9 8 35 35 H 1.09001 * 109.47065 * 175.00276 * 12 9 8 36 36 H 1.08996 * 109.46980 * 55.00010 * 12 9 8 37 37 H 1.09001 * 109.46554 * 60.00575 * 13 12 9 38 38 H 1.08996 * 109.47599 * 300.00603 * 13 12 9 39 39 H 0.97003 * 119.99832 * 180.02562 * 17 16 14 40 40 H 1.09001 * 117.49766 * 215.00339 * 22 6 4 41 41 H 1.09008 * 117.49935 * 0.02562 * 22 6 4 42 42 H 1.08999 * 117.49897 * 359.97438 * 23 6 4 43 43 H 1.09004 * 117.49630 * 144.97732 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 6 3.6443 3.7664 -1.2558 8 7 4.2224 3.0912 -2.4254 9 6 3.8606 3.7874 -3.6673 10 1 3.8202 4.8610 -3.4835 11 6 2.4912 3.2999 -4.1450 12 6 4.9099 3.4930 -4.7413 13 6 6.2535 4.0907 -4.3189 14 6 7.2868 3.8012 -5.3770 15 1 7.0125 3.2468 -6.2623 16 6 8.5824 4.2442 -5.2149 17 7 8.9162 4.9198 -4.1370 18 14 9.8631 3.8860 -6.5266 19 1 9.2376 3.1161 -7.6318 20 1 10.4006 5.1651 -7.0561 21 1 10.9692 3.0916 -5.9346 22 6 3.9765 3.6783 1.3375 23 6 5.2638 3.1461 0.7027 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8935 -0.5139 0.8898 29 1 4.0946 4.7530 -1.1464 30 1 2.5679 3.8714 -1.3921 31 1 5.2240 3.0078 -2.3363 32 1 2.2230 3.8161 -5.0667 33 1 2.5317 2.2262 -4.3287 34 1 1.7438 3.5096 -3.3799 35 1 4.5964 3.9358 -5.6866 36 1 5.0136 2.4147 -4.8619 37 1 6.5670 3.6478 -3.3736 38 1 6.1497 5.1690 -4.1983 39 1 9.8276 5.2318 -4.0231 40 1 3.8161 4.7563 1.3227 41 1 3.5970 3.1583 2.2171 42 1 5.7304 2.2762 1.1650 43 1 5.9504 3.8738 0.2701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:20 Heat of formation + Delta-G solvation = -102.094889 kcal Electronic energy + Delta-G solvation = -21116.451724 eV Core-core repulsion = 17968.009399 eV Total energy + Delta-G solvation = -3148.442325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70324 -39.23416 -37.98471 -37.20468 -35.17726 -32.80536 -32.56229 -30.77255 -27.54251 -26.78768 -25.25114 -23.53671 -23.39241 -23.10604 -21.11191 -20.77908 -18.67061 -18.36860 -17.73893 -17.52946 -16.68726 -16.53190 -16.15918 -15.65581 -15.20326 -14.76827 -14.56461 -14.40609 -14.20852 -13.80088 -13.64998 -13.42071 -13.13430 -13.08546 -12.88438 -12.86702 -12.63294 -12.52915 -12.46908 -12.34649 -12.07913 -11.65612 -11.59832 -11.51056 -11.30545 -11.27731 -11.19434 -10.92363 -10.55284 -9.36092 -8.20911 -6.30743 1.16362 1.38076 1.39107 1.51847 1.63994 2.40133 2.54117 3.11921 3.19469 3.61380 3.68695 3.79805 3.98692 4.02998 4.07213 4.10983 4.31557 4.34351 4.48271 4.57453 4.62647 4.66073 4.72612 4.77255 4.89428 4.92550 4.93786 4.98808 5.03053 5.07543 5.11040 5.16102 5.21196 5.43257 5.47295 5.52712 5.69875 5.83825 6.19558 6.25814 6.37531 6.77299 6.85196 7.38033 8.90553 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021742 B = 0.004140 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.532323 B = 6761.621146 C = 7221.683657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.353 6.353 4 C 0.516 3.484 5 O -0.540 6.540 6 C -0.148 4.148 7 C 0.105 3.895 8 N -0.697 5.697 9 C 0.089 3.911 10 H 0.039 0.961 11 C -0.127 4.127 12 C -0.102 4.102 13 C 0.028 3.972 14 C -0.543 4.543 15 H 0.055 0.945 16 C 0.002 3.998 17 N -0.929 5.929 18 Si 0.961 3.039 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.279 1.279 22 C -0.117 4.117 23 C -0.157 4.157 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.339 0.661 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.047 0.953 37 H -0.003 1.003 38 H -0.011 1.011 39 H 0.263 0.737 40 H 0.132 0.868 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.398 -3.877 11.119 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.270 6.270 4 C 0.360 3.640 5 O -0.429 6.429 6 C -0.150 4.150 7 C -0.024 4.024 8 N -0.330 5.330 9 C -0.020 4.020 10 H 0.057 0.943 11 C -0.185 4.185 12 C -0.140 4.140 13 C -0.009 4.009 14 C -0.581 4.581 15 H 0.074 0.926 16 C -0.196 4.196 17 N -0.569 5.569 18 Si 0.786 3.214 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.205 1.205 22 C -0.154 4.154 23 C -0.194 4.194 24 H 0.085 0.915 25 H 0.118 0.882 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.158 0.842 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.016 0.984 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.150 0.850 41 H 0.134 0.866 42 H 0.114 0.886 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.605 -4.571 11.129 21.324 hybrid contribution 1.838 0.346 -0.637 1.975 sum -15.767 -4.226 10.492 19.405 Atomic orbital electron populations 1.21801 0.89966 1.04353 1.03798 1.23278 0.97364 0.79403 1.02098 1.86485 1.23563 1.33397 1.83514 1.22527 0.80533 0.90722 0.70204 1.90625 1.61476 1.43858 1.46969 1.21008 1.04237 0.91755 0.97971 1.21441 1.01151 0.93463 0.86365 1.60606 1.17495 1.53150 1.01775 1.21522 0.95807 0.95369 0.89311 0.94333 1.21710 0.94785 1.01129 1.00871 1.21649 0.94676 0.99974 0.97716 1.18993 0.92398 0.94154 0.95358 1.21708 0.95451 1.34963 1.05976 0.92646 1.25914 1.00876 0.94876 0.97904 1.70081 1.19513 1.38607 1.28714 0.85456 0.78661 0.78098 0.79187 1.18866 1.20208 1.20495 1.23290 0.98132 1.01938 0.92083 1.23151 0.90494 1.03616 1.02101 0.91502 0.88200 0.90771 0.92391 0.91276 0.93176 0.88842 0.84154 0.91548 0.93210 0.91965 0.92196 0.93417 0.98443 0.99247 0.92830 0.84952 0.86644 0.88581 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 10.29 71.98 0.74 -1.20 16 2 C 0.05 1.11 6.19 71.98 0.45 1.56 16 3 O -0.35 -9.33 10.22 -51.50 -0.53 -9.85 16 4 C 0.52 15.86 7.03 71.24 0.50 16.36 16 5 O -0.54 -20.17 16.45 21.99 0.36 -19.81 16 6 C -0.15 -3.96 2.25 -52.93 -0.12 -4.08 16 7 C 0.10 2.92 5.30 86.30 0.46 3.38 16 8 N -0.70 -24.26 6.10 -491.55 -3.00 -27.26 16 9 C 0.09 3.07 2.64 44.92 0.12 3.19 16 10 H 0.04 1.33 7.86 -2.39 -0.02 1.31 16 11 C -0.13 -3.57 9.41 71.98 0.68 -2.89 16 12 C -0.10 -4.31 4.74 30.60 0.15 -4.16 16 13 C 0.03 1.48 4.80 29.85 0.14 1.62 16 14 C -0.54 -31.42 9.11 25.60 0.23 -31.18 16 15 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 16 C 0.00 0.13 5.46 84.65 0.46 0.59 16 17 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 18 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 19 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 22 C -0.12 -2.22 9.95 30.62 0.30 -1.92 16 23 C -0.16 -4.03 9.77 30.62 0.30 -3.73 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 1.37 8.13 -2.39 -0.02 1.36 16 28 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 29 H 0.05 1.35 8.11 -2.39 -0.02 1.33 16 30 H 0.09 2.34 7.32 -2.38 -0.02 2.32 16 31 H 0.34 13.75 6.53 -89.70 -0.59 13.16 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.53 7.38 -2.39 -0.02 1.52 16 35 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.00 -0.15 6.43 -2.39 -0.02 -0.16 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 40 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.10 2.62 8.00 -2.39 -0.02 2.60 16 43 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 Total: -1.00 -69.20 357.35 3.94 -65.26 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.38 Total: 23.23 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 4.41 Total: -22.46 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.71 Total: -83.41 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.16 Total: -29.66 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -69.20 3.94 -65.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.834 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds