Wall clock time and date at job start Mon Mar 30 2020 01:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47095 * 2 1 4 4 C 1.34232 * 116.99934 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00164 * 355.37762 * 4 3 2 6 6 C 1.50705 * 120.00029 * 175.36806 * 4 3 2 7 7 N 1.46906 * 112.85091 * 323.32623 * 6 4 3 8 8 C 1.46895 * 110.99657 * 294.30463 * 7 6 4 9 9 H 1.08997 * 109.48099 * 33.19406 * 8 7 6 10 10 C 1.53002 * 109.47084 * 273.19507 * 8 7 6 11 11 C 1.53001 * 109.47172 * 153.20078 * 8 7 6 12 12 C 1.53007 * 109.46964 * 294.99324 * 11 8 7 13 13 C 1.50696 * 109.47298 * 179.97438 * 12 11 8 14 14 H 1.08001 * 120.00032 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99895 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00166 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00250 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46973 * 59.99699 * 17 15 13 19 19 H 1.48494 * 109.47727 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47095 * 300.00132 * 17 15 13 21 21 C 1.53778 * 113.68848 * 94.59128 * 6 4 3 22 22 C 1.53778 * 87.08254 * 89.12878 * 21 6 4 23 23 C 1.53775 * 113.61525 * 192.12495 * 6 4 3 24 24 H 1.09005 * 109.47066 * 60.00361 * 1 2 3 25 25 H 1.08999 * 109.47044 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47506 * 300.00473 * 1 2 3 27 27 H 1.09004 * 109.47269 * 240.00024 * 2 1 3 28 28 H 1.09005 * 109.47066 * 119.99639 * 2 1 3 29 29 H 1.00899 * 110.99662 * 58.25219 * 7 6 4 30 30 H 1.08994 * 109.47590 * 186.22448 * 10 8 7 31 31 H 1.09001 * 109.46848 * 306.22507 * 10 8 7 32 32 H 1.09004 * 109.47313 * 66.22438 * 10 8 7 33 33 H 1.08991 * 109.47527 * 54.99084 * 11 8 7 34 34 H 1.09000 * 109.47425 * 175.00103 * 11 8 7 35 35 H 1.08998 * 109.46774 * 300.00596 * 12 11 8 36 36 H 1.09004 * 109.46459 * 59.99632 * 12 11 8 37 37 H 0.96998 * 120.00335 * 180.02562 * 16 15 13 38 38 H 1.08999 * 113.61463 * 203.67672 * 21 6 4 39 39 H 1.09002 * 113.61712 * 334.58053 * 21 6 4 40 40 H 1.09000 * 113.61347 * 270.88641 * 22 21 6 41 41 H 1.08999 * 113.61819 * 139.98293 * 22 21 6 42 42 H 1.09004 * 113.61756 * 25.35481 * 23 6 4 43 43 H 1.09005 * 113.61458 * 156.24888 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0802 0.5901 0.0853 6 6 3.9213 2.9332 -0.1048 7 7 3.1454 3.8072 -0.9949 8 6 3.2081 3.3330 -2.3838 9 1 3.2673 2.2447 -2.3940 10 6 4.4461 3.9174 -3.0669 11 6 1.9522 3.7824 -3.1333 12 6 0.7247 3.0990 -2.5274 13 6 -0.5124 3.5421 -3.2652 14 1 -0.4312 4.2410 -4.0846 15 6 -1.7478 3.0554 -2.8941 16 7 -1.8467 2.2048 -1.8960 17 14 -3.2812 3.6041 -3.8090 18 1 -3.1635 3.2298 -5.2413 19 1 -4.4725 2.9409 -3.2209 20 1 -3.4264 5.0774 -3.6928 21 6 4.2464 3.5720 1.2557 22 6 5.6377 2.9278 1.1372 23 6 5.4329 2.9527 -0.3866 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 2.1893 3.8846 -0.6821 30 1 4.4345 3.6567 -4.1251 31 1 4.4420 5.0022 -2.9599 32 1 5.3440 3.5099 -2.6022 33 1 1.8453 4.8637 -3.0476 34 1 2.0388 3.5080 -4.1847 35 1 0.8316 2.0177 -2.6131 36 1 0.6382 3.3733 -1.4760 37 1 -2.7158 1.8620 -1.6351 38 1 4.2664 4.6616 1.2328 39 1 3.6503 3.1758 2.0778 40 1 5.6902 1.9222 1.5544 41 1 6.4477 3.5719 1.4795 42 1 5.7948 2.0564 -0.8905 43 1 5.7773 3.8729 -0.8586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:27 Heat of formation + Delta-G solvation = -82.098286 kcal Electronic energy + Delta-G solvation = -22441.957763 eV Core-core repulsion = 19294.382556 eV Total energy + Delta-G solvation = -3147.575207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.89825 -38.39709 -36.45768 -35.59199 -32.97423 -31.23370 -30.36465 -29.20312 -25.79736 -25.35244 -24.76148 -22.83657 -21.77517 -21.13602 -19.53671 -19.10722 -17.25299 -16.59794 -16.25718 -16.10410 -15.40809 -14.95217 -14.49400 -14.41717 -13.64220 -13.23432 -13.11746 -12.59171 -12.46066 -12.40153 -12.13584 -11.93789 -11.71662 -11.58841 -11.34718 -11.13007 -11.03453 -10.96815 -10.90186 -10.85368 -10.54628 -10.37938 -10.18175 -10.03682 -10.00012 -9.73243 -9.24411 -9.00025 -8.34184 -8.19431 -5.98612 -3.99738 2.41452 2.96800 3.33328 3.37668 3.40797 4.36279 4.46511 4.55170 4.70848 4.82423 4.95030 5.31647 5.36418 5.41978 5.47576 5.51416 5.68114 5.72133 5.76610 5.82515 5.87254 5.90087 5.98308 6.09981 6.16341 6.21199 6.34618 6.37435 6.45502 6.50587 6.54283 6.76110 6.88957 7.08373 7.19190 7.34105 7.64111 7.78521 7.86488 8.03484 8.08720 8.45125 9.05741 9.63563 11.11217 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020224 B = 0.006316 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.186355 B = 4431.951105 C = 5341.852642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.073 3.927 3 O -0.335 6.335 4 C 0.453 3.547 5 O -0.519 6.519 6 C 0.089 3.911 7 N -0.653 5.653 8 C 0.082 3.918 9 H 0.033 0.967 10 C -0.144 4.144 11 C -0.117 4.117 12 C 0.026 3.974 13 C -0.519 4.519 14 H 0.052 0.948 15 C 0.061 3.939 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.111 4.111 22 C -0.144 4.144 23 C -0.107 4.107 24 H 0.113 0.887 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.362 0.638 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.011 0.989 36 H 0.021 0.979 37 H 0.259 0.741 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.440 0.093 5.344 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.001 4.001 3 O -0.251 6.251 4 C 0.294 3.706 5 O -0.407 6.407 6 C -0.005 4.005 7 N -0.288 5.288 8 C -0.027 4.027 9 H 0.051 0.949 10 C -0.202 4.202 11 C -0.155 4.155 12 C -0.011 4.011 13 C -0.557 4.557 14 H 0.070 0.930 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.717 3.283 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.149 4.149 22 C -0.182 4.182 23 C -0.145 4.145 24 H 0.131 0.869 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.186 0.814 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.959 0.128 5.395 13.120 hybrid contribution -1.629 -0.872 -0.466 1.906 sum 10.330 -0.744 4.928 11.470 Atomic orbital electron populations 1.21947 0.91162 1.02030 1.06763 1.23004 0.96638 0.79529 1.00917 1.86634 1.23136 1.32702 1.82607 1.24409 0.81380 0.92780 0.71997 1.90576 1.60909 1.43326 1.45917 1.22302 0.95400 0.85447 0.97397 1.60980 1.19722 1.46561 1.01577 1.21605 0.96706 0.96537 0.87827 0.94858 1.21997 0.97295 1.01584 0.99325 1.21882 0.94077 1.00856 0.98682 1.19084 0.90707 0.95281 0.96014 1.21198 0.91788 1.26283 1.16456 0.92989 1.24944 0.98780 0.95202 0.95126 1.69846 1.24100 1.31295 1.27523 0.86718 0.82708 0.78832 0.80020 1.20512 1.21421 1.20394 1.22955 0.96502 1.01687 0.93725 1.22863 0.97192 1.01452 0.96684 1.23032 0.91173 1.03328 0.96919 0.86865 0.91719 0.92222 0.92075 0.92567 0.81394 0.92990 0.92075 0.92979 0.92352 0.92772 0.97047 0.96125 0.93167 0.87591 0.91308 0.89818 0.90724 0.90759 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.29 37.15 0.38 -2.52 16 2 C 0.07 1.28 6.21 37.15 0.23 1.51 16 3 O -0.34 -6.47 9.85 -39.26 -0.39 -6.86 16 4 C 0.45 8.16 5.84 36.01 0.21 8.37 16 5 O -0.52 -9.95 15.12 -18.75 -0.28 -10.24 16 6 C 0.09 1.36 1.08 -131.94 -0.14 1.21 16 7 N -0.65 -10.80 6.15 -93.39 -0.57 -11.38 16 8 C 0.08 1.44 2.41 -67.71 -0.16 1.28 16 9 H 0.03 0.65 6.91 -51.93 -0.36 0.29 16 10 C -0.14 -2.09 8.89 37.16 0.33 -1.76 16 11 C -0.12 -2.38 4.73 -26.73 -0.13 -2.50 16 12 C 0.03 0.65 4.81 -27.88 -0.13 0.51 16 13 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 14 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -24.55 12.09 55.43 0.67 -23.88 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.11 -1.39 7.46 -25.92 -0.19 -1.59 16 22 C -0.14 -1.67 7.70 -25.92 -0.20 -1.87 16 23 C -0.11 -1.40 5.12 -25.92 -0.13 -1.53 16 24 H 0.11 2.49 6.91 -51.93 -0.36 2.14 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 29 H 0.36 6.75 6.25 -39.29 -0.25 6.51 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.68 5.31 -51.93 -0.28 0.41 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.02 0.53 6.43 -51.93 -0.33 0.20 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 40 H 0.08 1.06 7.65 -51.93 -0.40 0.66 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.05 7.62 -51.93 -0.40 0.65 16 43 H 0.10 1.24 6.75 -51.93 -0.35 0.89 16 LS Contribution 340.68 15.07 5.13 5.13 Total: -1.00 -28.44 340.68 -8.14 -36.58 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.33 Total: 6.32 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.35 Total: -11.80 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.10 Total: -35.26 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.67 Total: -17.10 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.44 -8.14 -36.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.521 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds