Wall clock time and date at job start Mon Mar 30 2020 01:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47095 * 2 1 4 4 C 1.34232 * 116.99934 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00164 * 355.37762 * 4 3 2 6 6 C 1.50705 * 120.00029 * 175.36806 * 4 3 2 7 7 N 1.46906 * 112.85091 * 323.32623 * 6 4 3 8 8 C 1.46895 * 110.99657 * 294.30463 * 7 6 4 9 9 H 1.08997 * 109.48099 * 33.19406 * 8 7 6 10 10 C 1.53002 * 109.47084 * 273.19507 * 8 7 6 11 11 C 1.53001 * 109.47172 * 153.20078 * 8 7 6 12 12 C 1.53007 * 109.46964 * 294.99324 * 11 8 7 13 13 C 1.50696 * 109.47298 * 179.97438 * 12 11 8 14 14 H 1.08001 * 120.00032 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99895 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00166 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00250 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46973 * 59.99699 * 17 15 13 19 19 H 1.48494 * 109.47727 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47095 * 300.00132 * 17 15 13 21 21 C 1.53778 * 113.68848 * 94.59128 * 6 4 3 22 22 C 1.53778 * 87.08254 * 89.12878 * 21 6 4 23 23 C 1.53775 * 113.61525 * 192.12495 * 6 4 3 24 24 H 1.09005 * 109.47066 * 60.00361 * 1 2 3 25 25 H 1.08999 * 109.47044 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47506 * 300.00473 * 1 2 3 27 27 H 1.09004 * 109.47269 * 240.00024 * 2 1 3 28 28 H 1.09005 * 109.47066 * 119.99639 * 2 1 3 29 29 H 1.00899 * 110.99662 * 58.25219 * 7 6 4 30 30 H 1.08994 * 109.47590 * 186.22448 * 10 8 7 31 31 H 1.09001 * 109.46848 * 306.22507 * 10 8 7 32 32 H 1.09004 * 109.47313 * 66.22438 * 10 8 7 33 33 H 1.08991 * 109.47527 * 54.99084 * 11 8 7 34 34 H 1.09000 * 109.47425 * 175.00103 * 11 8 7 35 35 H 1.08998 * 109.46774 * 300.00596 * 12 11 8 36 36 H 1.09004 * 109.46459 * 59.99632 * 12 11 8 37 37 H 0.96998 * 120.00335 * 180.02562 * 16 15 13 38 38 H 1.08999 * 113.61463 * 203.67672 * 21 6 4 39 39 H 1.09002 * 113.61712 * 334.58053 * 21 6 4 40 40 H 1.09000 * 113.61347 * 270.88641 * 22 21 6 41 41 H 1.08999 * 113.61819 * 139.98293 * 22 21 6 42 42 H 1.09004 * 113.61756 * 25.35481 * 23 6 4 43 43 H 1.09005 * 113.61458 * 156.24888 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0802 0.5901 0.0853 6 6 3.9213 2.9332 -0.1048 7 7 3.1454 3.8072 -0.9949 8 6 3.2081 3.3330 -2.3838 9 1 3.2673 2.2447 -2.3940 10 6 4.4461 3.9174 -3.0669 11 6 1.9522 3.7824 -3.1333 12 6 0.7247 3.0990 -2.5274 13 6 -0.5124 3.5421 -3.2652 14 1 -0.4312 4.2410 -4.0846 15 6 -1.7478 3.0554 -2.8941 16 7 -1.8467 2.2048 -1.8960 17 14 -3.2812 3.6041 -3.8090 18 1 -3.1635 3.2298 -5.2413 19 1 -4.4725 2.9409 -3.2209 20 1 -3.4264 5.0774 -3.6928 21 6 4.2464 3.5720 1.2557 22 6 5.6377 2.9278 1.1372 23 6 5.4329 2.9527 -0.3866 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 2.1893 3.8846 -0.6821 30 1 4.4345 3.6567 -4.1251 31 1 4.4420 5.0022 -2.9599 32 1 5.3440 3.5099 -2.6022 33 1 1.8453 4.8637 -3.0476 34 1 2.0388 3.5080 -4.1847 35 1 0.8316 2.0177 -2.6131 36 1 0.6382 3.3733 -1.4760 37 1 -2.7158 1.8620 -1.6351 38 1 4.2664 4.6616 1.2328 39 1 3.6503 3.1758 2.0778 40 1 5.6902 1.9222 1.5544 41 1 6.4477 3.5719 1.4795 42 1 5.7948 2.0564 -0.8905 43 1 5.7773 3.8729 -0.8586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:26 Heat of formation + Delta-G solvation = -97.984095 kcal Electronic energy + Delta-G solvation = -22442.646624 eV Core-core repulsion = 19294.382556 eV Total energy + Delta-G solvation = -3148.264067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.22218 -39.70068 -37.94241 -37.01803 -34.93388 -32.70875 -31.99170 -30.66340 -27.23719 -26.54512 -26.32645 -24.17388 -23.38810 -22.62492 -21.07036 -20.35947 -18.64794 -18.44226 -17.78948 -17.53356 -16.70391 -16.44922 -16.35691 -15.56240 -15.08850 -14.69493 -14.56967 -14.27920 -14.16845 -13.66262 -13.41624 -13.37037 -13.16626 -12.91717 -12.83971 -12.78594 -12.51682 -12.43493 -12.38379 -12.25147 -12.17215 -11.67246 -11.64917 -11.52181 -11.35277 -11.26353 -11.17139 -10.83135 -10.43417 -9.60146 -8.07697 -6.17597 1.01174 1.43448 1.44187 1.51552 1.63724 2.45967 3.10592 3.22703 3.42534 3.59334 3.63257 3.84086 3.97488 4.03131 4.06317 4.25176 4.30137 4.34835 4.44848 4.74239 4.78487 4.81051 4.86475 4.92599 4.96402 4.98024 5.02065 5.05033 5.05813 5.16731 5.24572 5.29684 5.44473 5.46136 5.57796 5.65127 5.78353 5.96537 6.03070 6.28065 6.36196 6.66268 6.95083 7.48947 9.00087 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020224 B = 0.006316 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.186355 B = 4431.951105 C = 5341.852642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 O -0.356 6.356 4 C 0.449 3.551 5 O -0.536 6.536 6 C 0.072 3.928 7 N -0.642 5.642 8 C 0.089 3.911 9 H 0.008 0.992 10 C -0.136 4.136 11 C -0.107 4.107 12 C 0.042 3.958 13 C -0.548 4.548 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.905 5.905 17 Si 0.952 3.048 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.104 4.104 22 C -0.131 4.131 23 C -0.101 4.101 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.348 0.652 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.052 0.948 35 H -0.021 1.021 36 H 0.003 0.997 37 H 0.260 0.740 38 H 0.125 0.875 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.528 1.260 5.531 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.002 4.002 3 O -0.272 6.272 4 C 0.291 3.709 5 O -0.425 6.425 6 C -0.022 4.022 7 N -0.275 5.275 8 C -0.020 4.020 9 H 0.026 0.974 10 C -0.194 4.194 11 C -0.145 4.145 12 C 0.005 3.995 13 C -0.586 4.586 14 H 0.069 0.931 15 C -0.187 4.187 16 N -0.544 5.544 17 Si 0.778 3.222 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.141 4.141 22 C -0.169 4.169 23 C -0.138 4.138 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.169 0.831 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.071 0.929 35 H -0.003 1.003 36 H 0.022 0.978 37 H 0.069 0.931 38 H 0.143 0.857 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.067 1.298 5.579 14.267 hybrid contribution -2.002 -1.292 -0.507 2.436 sum 11.065 0.006 5.072 12.172 Atomic orbital electron populations 1.21822 0.91389 1.03156 1.04466 1.23060 0.96408 0.79305 1.01460 1.86643 1.24251 1.33478 1.82781 1.25059 0.80757 0.93872 0.71209 1.90552 1.60979 1.44110 1.46835 1.22728 0.96296 0.83931 0.99200 1.61098 1.18784 1.46418 1.01227 1.21515 0.96797 0.95161 0.88558 0.97405 1.21934 0.95981 1.02064 0.99421 1.21727 0.93699 1.00452 0.98655 1.18839 0.92107 0.93423 0.95101 1.21568 0.93164 1.26833 1.17014 0.93091 1.25733 1.01698 0.95260 0.95968 1.69994 1.24717 1.31507 1.28196 0.85717 0.79093 0.78576 0.78816 1.20095 1.20952 1.19753 1.23032 0.96887 1.02620 0.91610 1.22796 0.97541 1.01322 0.95248 1.23099 0.88836 1.03667 0.98247 0.91028 0.88960 0.92346 0.92791 0.90595 0.83079 0.92374 0.90983 0.91280 0.91974 0.92885 1.00308 0.97834 0.93095 0.85730 0.91609 0.91120 0.87500 0.91969 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 10.29 71.98 0.74 -4.83 16 2 C 0.07 2.58 6.21 71.98 0.45 3.02 16 3 O -0.36 -14.22 9.85 -51.44 -0.51 -14.73 16 4 C 0.45 16.35 5.84 71.24 0.42 16.77 16 5 O -0.54 -20.68 15.12 21.98 0.33 -20.35 16 6 C 0.07 2.15 1.08 3.30 0.00 2.16 16 7 N -0.64 -20.92 6.15 -449.38 -2.77 -23.68 16 8 C 0.09 3.10 2.41 44.92 0.11 3.21 16 9 H 0.01 0.31 6.91 -2.39 -0.02 0.30 16 10 C -0.14 -3.66 8.89 71.98 0.64 -3.02 16 11 C -0.11 -4.41 4.73 30.60 0.14 -4.27 16 12 C 0.04 2.17 4.81 29.85 0.14 2.31 16 13 C -0.55 -30.52 9.11 25.60 0.23 -30.29 16 14 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 15 C 0.01 0.72 5.46 84.65 0.46 1.18 16 16 N -0.91 -51.23 12.09 21.45 0.26 -50.97 16 17 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 C -0.10 -2.40 7.46 31.12 0.23 -2.16 16 22 C -0.13 -2.69 7.70 31.12 0.24 -2.45 16 23 C -0.10 -2.42 5.12 31.12 0.16 -2.26 16 24 H 0.07 3.30 6.91 -2.38 -0.02 3.29 16 25 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.08 2.43 8.10 -2.38 -0.02 2.41 16 29 H 0.35 13.18 6.25 -89.69 -0.56 12.62 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 1.62 5.31 -2.38 -0.01 1.61 16 33 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 35 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 36 H 0.00 0.19 6.43 -2.39 -0.02 0.17 16 37 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 40 H 0.07 1.66 7.65 -2.39 -0.02 1.64 16 41 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 1.66 7.62 -2.39 -0.02 1.64 16 43 H 0.12 2.49 6.75 -2.38 -0.02 2.48 16 Total: -1.00 -62.47 340.68 3.74 -58.73 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.42 Total: 26.02 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 3.97 Total: -20.63 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -2.51 Total: -74.65 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.17 Total: -35.08 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -62.47 3.74 -58.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.250 kcal (2) G-P(sol) polarization free energy of solvation -62.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds