Wall clock time and date at job start Mon Mar 30 2020 01:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45205 * 109.46925 * 2 1 4 4 C 1.34233 * 116.99738 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99976 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99738 * 180.02562 * 4 3 2 7 7 N 1.46907 * 112.84940 * 323.11914 * 6 4 3 8 8 C 1.46897 * 110.99773 * 66.34383 * 7 6 4 9 9 H 1.09004 * 109.47365 * 334.66679 * 8 7 6 10 10 C 1.53001 * 109.46989 * 94.66845 * 8 7 6 11 11 C 1.53001 * 109.47053 * 214.66475 * 8 7 6 12 12 C 1.53005 * 109.47075 * 65.00392 * 11 8 7 13 13 C 1.50691 * 109.47172 * 179.97438 * 12 11 8 14 14 H 1.08001 * 120.00253 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00024 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99843 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00109 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46908 * 90.00545 * 17 15 13 19 19 H 1.48499 * 109.47212 * 210.00228 * 17 15 13 20 20 H 1.48496 * 109.47286 * 330.00525 * 17 15 13 21 21 C 1.53779 * 113.61796 * 94.31434 * 6 4 3 22 22 C 1.53964 * 87.01772 * 89.22782 * 21 6 4 23 23 C 1.53782 * 87.11049 * 25.36426 * 22 21 6 24 24 H 1.08993 * 109.47706 * 300.00119 * 1 2 3 25 25 H 1.09002 * 109.47243 * 60.00273 * 1 2 3 26 26 H 1.09007 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47702 * 239.99934 * 2 1 3 28 28 H 1.09002 * 109.47243 * 119.99727 * 2 1 3 29 29 H 1.00903 * 110.99644 * 302.39521 * 7 6 4 30 30 H 1.09004 * 109.46969 * 299.99948 * 10 8 7 31 31 H 1.09004 * 109.47202 * 59.99734 * 10 8 7 32 32 H 1.08999 * 109.46928 * 179.97438 * 10 8 7 33 33 H 1.09000 * 109.46934 * 185.00287 * 11 8 7 34 34 H 1.08993 * 109.47172 * 305.00586 * 11 8 7 35 35 H 1.09000 * 109.46636 * 300.00326 * 12 11 8 36 36 H 1.09003 * 109.47022 * 59.99508 * 12 11 8 37 37 H 0.97000 * 119.99527 * 179.97438 * 16 15 13 38 38 H 1.08994 * 113.61482 * 203.74594 * 21 6 4 39 39 H 1.08999 * 113.61618 * 334.65453 * 21 6 4 40 40 H 1.08996 * 113.53631 * 270.81281 * 22 21 6 41 41 H 1.09003 * 113.74067 * 139.94547 * 22 21 6 42 42 H 1.08993 * 113.61445 * 220.08942 * 23 22 21 43 43 H 1.08999 * 113.61561 * 89.18672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 7 3.1383 3.8787 -0.8113 8 6 1.8092 4.1006 -0.2263 9 1 1.5282 3.2363 0.3755 10 6 1.8432 5.3486 0.6581 11 6 0.7854 4.2969 -1.3462 12 6 0.6607 3.0045 -2.1556 13 6 -0.3482 3.1977 -3.2582 14 1 -0.8500 4.1474 -3.3707 15 6 -0.6299 2.1623 -4.1240 16 7 -0.0185 1.0059 -3.9872 17 14 -1.8810 2.4015 -5.4903 18 1 -1.1945 2.9030 -6.7079 19 1 -2.5388 1.1047 -5.7918 20 1 -2.9043 3.3868 -5.0577 21 6 4.2535 3.4659 1.4064 22 6 5.6462 2.8347 1.2262 23 6 5.4302 2.9799 -0.2895 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.0645 3.5583 -1.7653 30 1 2.5727 5.2087 1.4560 31 1 2.1242 6.2129 0.0563 32 1 0.8569 5.5134 1.0919 33 1 -0.1826 4.5494 -0.9133 34 1 1.1128 5.1050 -2.0002 35 1 1.6287 2.7521 -2.5883 36 1 0.3333 2.1963 -1.5014 37 1 -0.2170 0.2774 -4.5961 38 1 4.2722 4.5538 1.4707 39 1 3.6630 3.0041 2.1978 40 1 5.7016 1.7993 1.5621 41 1 6.4597 3.4490 1.6121 42 1 5.7881 2.1265 -0.8652 43 1 5.7711 3.9347 -0.6896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:28 Heat of formation + Delta-G solvation = -80.344806 kcal Electronic energy + Delta-G solvation = -22604.925361 eV Core-core repulsion = 19457.426191 eV Total energy + Delta-G solvation = -3147.499170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86979 -38.30022 -36.62336 -35.38012 -32.96898 -31.29327 -30.29262 -29.17913 -25.81908 -25.25940 -24.79600 -22.91631 -21.65939 -21.19822 -19.50075 -19.09022 -17.34561 -16.47135 -16.23689 -16.01244 -15.44873 -14.80521 -14.47867 -14.39625 -13.66563 -13.27702 -12.98520 -12.64444 -12.53831 -12.39385 -12.20653 -11.91871 -11.68164 -11.53926 -11.38200 -11.20788 -11.08629 -10.98188 -10.94163 -10.82630 -10.51597 -10.32392 -10.20124 -10.01511 -9.86982 -9.60885 -9.19209 -8.95818 -8.32959 -8.13240 -5.98860 -3.99758 2.48202 2.99454 3.31399 3.38253 3.41351 4.44152 4.46687 4.56035 4.67656 4.82712 4.92585 5.32124 5.37452 5.40456 5.47553 5.61729 5.71587 5.73026 5.80789 5.84906 5.89050 5.98787 6.05088 6.10289 6.16611 6.27257 6.30416 6.37305 6.43645 6.55580 6.62881 6.67332 6.92208 6.99078 7.15689 7.40954 7.64591 7.78036 7.90351 8.06716 8.14162 8.46314 9.07213 9.63557 11.11461 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.006347 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.005465 B = 4410.163055 C = 4972.614173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.068 3.932 3 O -0.331 6.331 4 C 0.453 3.547 5 O -0.516 6.516 6 C 0.090 3.910 7 N -0.654 5.654 8 C 0.072 3.928 9 H 0.070 0.930 10 C -0.140 4.140 11 C -0.117 4.117 12 C 0.022 3.978 13 C -0.518 4.518 14 H 0.052 0.948 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.112 4.112 22 C -0.143 4.143 23 C -0.107 4.107 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.356 0.644 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.007 0.993 36 H 0.031 0.969 37 H 0.258 0.742 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.955 2.887 11.302 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.006 4.006 3 O -0.246 6.246 4 C 0.294 3.706 5 O -0.404 6.404 6 C -0.004 4.004 7 N -0.288 5.288 8 C -0.037 4.037 9 H 0.088 0.912 10 C -0.198 4.198 11 C -0.155 4.155 12 C -0.015 4.015 13 C -0.556 4.556 14 H 0.070 0.930 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.715 3.285 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.150 4.150 22 C -0.181 4.181 23 C -0.145 4.145 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.178 0.822 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.025 0.975 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.125 0.875 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.395 2.949 11.496 13.984 hybrid contribution -1.221 -1.080 -1.222 2.037 sum 6.174 1.870 10.274 12.131 Atomic orbital electron populations 1.21861 0.92380 1.02394 1.04535 1.22959 0.95901 0.80353 1.01377 1.86743 1.23243 1.31956 1.82695 1.24486 0.81345 0.92740 0.72056 1.90583 1.60856 1.43150 1.45803 1.22382 0.95135 0.84639 0.98268 1.60974 1.17243 1.44190 1.06412 1.21874 0.87624 0.97475 0.96710 0.91237 1.21936 1.00415 0.98363 0.99065 1.21885 0.96479 1.01216 0.95927 1.19189 0.96163 0.91907 0.94263 1.21283 1.23028 0.97978 1.13325 0.92951 1.24971 0.96269 0.95364 0.97604 1.69957 1.42568 1.02788 1.37914 0.86682 0.81782 0.77351 0.82682 1.20818 1.21376 1.20003 1.23086 0.96459 1.02071 0.93390 1.22880 0.97125 1.01511 0.96588 1.22907 0.91017 1.03431 0.97114 0.92531 0.88791 0.91218 0.91187 0.92652 0.82193 0.93235 0.92654 0.93155 0.92782 0.93009 0.97522 0.95035 0.93234 0.87515 0.91520 0.89814 0.90759 0.90519 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 10.04 37.15 0.37 -2.21 16 2 C 0.07 1.19 6.19 37.15 0.23 1.42 16 3 O -0.33 -6.22 5.58 -39.27 -0.22 -6.44 16 4 C 0.45 8.23 7.01 36.01 0.25 8.49 16 5 O -0.52 -10.17 15.13 -18.75 -0.28 -10.45 16 6 C 0.09 1.38 1.05 -131.94 -0.14 1.24 16 7 N -0.65 -10.75 6.20 -93.38 -0.58 -11.33 16 8 C 0.07 1.21 1.96 -67.71 -0.13 1.08 16 9 H 0.07 1.26 5.19 -51.93 -0.27 0.99 16 10 C -0.14 -1.97 9.32 37.16 0.35 -1.62 16 11 C -0.12 -2.35 4.67 -26.73 -0.12 -2.48 16 12 C 0.02 0.53 4.28 -27.88 -0.12 0.41 16 13 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 14 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.11 -1.40 5.95 -25.82 -0.15 -1.55 16 22 C -0.14 -1.67 7.70 -25.82 -0.20 -1.87 16 23 C -0.11 -1.42 7.23 -25.92 -0.19 -1.61 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.09 1.95 6.48 -51.93 -0.34 1.61 16 26 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 27 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 28 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 29 H 0.36 6.68 6.54 -39.29 -0.26 6.42 16 30 H 0.05 0.62 5.44 -51.93 -0.28 0.33 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.01 0.17 6.51 -51.93 -0.34 -0.16 16 36 H 0.03 0.80 5.01 -51.93 -0.26 0.54 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.11 1.21 6.58 -51.93 -0.34 0.87 16 39 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 40 H 0.08 1.07 7.65 -51.93 -0.40 0.67 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.11 7.62 -51.93 -0.40 0.71 16 43 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -29.29 333.60 -7.67 -36.96 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.07 Total: 6.49 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.26 Total: -11.69 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.16 Total: -36.28 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.50 Total: -16.89 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.29 -7.67 -36.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.380 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds