Wall clock time and date at job start Mon Mar 30 2020 01:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45205 * 109.46925 * 2 1 4 4 C 1.34233 * 116.99738 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99976 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99738 * 180.02562 * 4 3 2 7 7 N 1.46907 * 112.84940 * 323.11914 * 6 4 3 8 8 C 1.46897 * 110.99773 * 66.34383 * 7 6 4 9 9 H 1.09004 * 109.47365 * 334.66679 * 8 7 6 10 10 C 1.53001 * 109.46989 * 94.66845 * 8 7 6 11 11 C 1.53001 * 109.47053 * 214.66475 * 8 7 6 12 12 C 1.53005 * 109.47075 * 65.00392 * 11 8 7 13 13 C 1.50691 * 109.47172 * 179.97438 * 12 11 8 14 14 H 1.08001 * 120.00253 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00024 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99843 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00109 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46908 * 90.00545 * 17 15 13 19 19 H 1.48499 * 109.47212 * 210.00228 * 17 15 13 20 20 H 1.48496 * 109.47286 * 330.00525 * 17 15 13 21 21 C 1.53779 * 113.61796 * 94.31434 * 6 4 3 22 22 C 1.53964 * 87.01772 * 89.22782 * 21 6 4 23 23 C 1.53782 * 87.11049 * 25.36426 * 22 21 6 24 24 H 1.08993 * 109.47706 * 300.00119 * 1 2 3 25 25 H 1.09002 * 109.47243 * 60.00273 * 1 2 3 26 26 H 1.09007 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47702 * 239.99934 * 2 1 3 28 28 H 1.09002 * 109.47243 * 119.99727 * 2 1 3 29 29 H 1.00903 * 110.99644 * 302.39521 * 7 6 4 30 30 H 1.09004 * 109.46969 * 299.99948 * 10 8 7 31 31 H 1.09004 * 109.47202 * 59.99734 * 10 8 7 32 32 H 1.08999 * 109.46928 * 179.97438 * 10 8 7 33 33 H 1.09000 * 109.46934 * 185.00287 * 11 8 7 34 34 H 1.08993 * 109.47172 * 305.00586 * 11 8 7 35 35 H 1.09000 * 109.46636 * 300.00326 * 12 11 8 36 36 H 1.09003 * 109.47022 * 59.99508 * 12 11 8 37 37 H 0.97000 * 119.99527 * 179.97438 * 16 15 13 38 38 H 1.08994 * 113.61482 * 203.74594 * 21 6 4 39 39 H 1.08999 * 113.61618 * 334.65453 * 21 6 4 40 40 H 1.08996 * 113.53631 * 270.81281 * 22 21 6 41 41 H 1.09003 * 113.74067 * 139.94547 * 22 21 6 42 42 H 1.08993 * 113.61445 * 220.08942 * 23 22 21 43 43 H 1.08999 * 113.61561 * 89.18672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 7 3.1383 3.8787 -0.8113 8 6 1.8092 4.1006 -0.2263 9 1 1.5282 3.2363 0.3755 10 6 1.8432 5.3486 0.6581 11 6 0.7854 4.2969 -1.3462 12 6 0.6607 3.0045 -2.1556 13 6 -0.3482 3.1977 -3.2582 14 1 -0.8500 4.1474 -3.3707 15 6 -0.6299 2.1623 -4.1240 16 7 -0.0185 1.0059 -3.9872 17 14 -1.8810 2.4015 -5.4903 18 1 -1.1945 2.9030 -6.7079 19 1 -2.5388 1.1047 -5.7918 20 1 -2.9043 3.3868 -5.0577 21 6 4.2535 3.4659 1.4064 22 6 5.6462 2.8347 1.2262 23 6 5.4302 2.9799 -0.2895 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.0645 3.5583 -1.7653 30 1 2.5727 5.2087 1.4560 31 1 2.1242 6.2129 0.0563 32 1 0.8569 5.5134 1.0919 33 1 -0.1826 4.5494 -0.9133 34 1 1.1128 5.1050 -2.0002 35 1 1.6287 2.7521 -2.5883 36 1 0.3333 2.1963 -1.5014 37 1 -0.2170 0.2774 -4.5961 38 1 4.2722 4.5538 1.4707 39 1 3.6630 3.0041 2.1978 40 1 5.7016 1.7993 1.5621 41 1 6.4597 3.4490 1.6121 42 1 5.7881 2.1265 -0.8652 43 1 5.7711 3.9347 -0.6896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:28 Heat of formation + Delta-G solvation = -97.326942 kcal Electronic energy + Delta-G solvation = -22605.661762 eV Core-core repulsion = 19457.426191 eV Total energy + Delta-G solvation = -3148.235571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.19898 -39.58491 -38.09710 -36.81808 -34.94429 -32.76411 -31.87354 -30.62556 -27.19827 -26.54059 -26.33736 -24.23550 -23.28192 -22.63817 -21.00621 -20.34587 -18.76171 -18.40275 -17.61648 -17.51882 -16.71792 -16.47810 -16.16014 -15.57268 -15.12228 -14.65977 -14.52430 -14.27353 -14.08002 -13.73088 -13.47420 -13.33348 -13.09647 -12.89701 -12.87308 -12.82923 -12.59555 -12.46613 -12.36442 -12.22754 -12.06240 -11.67532 -11.57567 -11.47865 -11.26196 -11.23473 -11.02326 -10.79811 -10.45218 -9.50907 -8.13276 -6.21634 1.06723 1.39195 1.40020 1.50147 1.65962 2.42986 3.16923 3.21447 3.40863 3.56838 3.63162 3.84996 3.98819 4.05055 4.21224 4.28964 4.34729 4.47442 4.62757 4.74713 4.79046 4.84552 4.90775 4.92610 4.95734 5.01834 5.07189 5.09866 5.14762 5.19896 5.23891 5.36090 5.41781 5.55569 5.57534 5.63647 5.83578 6.00746 6.14602 6.24167 6.35251 6.70721 6.95101 7.45508 8.96090 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.006347 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.005465 B = 4410.163055 C = 4972.614173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 O -0.342 6.342 4 C 0.446 3.554 5 O -0.539 6.539 6 C 0.075 3.925 7 N -0.644 5.644 8 C 0.078 3.922 9 H 0.059 0.941 10 C -0.132 4.132 11 C -0.107 4.107 12 C 0.032 3.968 13 C -0.539 4.539 14 H 0.051 0.949 15 C 0.009 3.991 16 N -0.921 5.921 17 Si 0.951 3.049 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.266 1.266 21 C -0.101 4.101 22 C -0.131 4.131 23 C -0.106 4.106 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.093 0.907 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.338 0.662 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.048 0.952 35 H -0.020 1.020 36 H 0.018 0.982 37 H 0.258 0.742 38 H 0.127 0.873 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.164 4.402 12.628 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.008 4.008 3 O -0.257 6.257 4 C 0.288 3.712 5 O -0.428 6.428 6 C -0.019 4.019 7 N -0.276 5.276 8 C -0.031 4.031 9 H 0.077 0.923 10 C -0.190 4.190 11 C -0.145 4.145 12 C -0.005 4.005 13 C -0.578 4.578 14 H 0.070 0.930 15 C -0.190 4.190 16 N -0.561 5.561 17 Si 0.777 3.223 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.191 1.191 21 C -0.138 4.138 22 C -0.168 4.168 23 C -0.143 4.143 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.111 0.889 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.158 0.842 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.067 0.933 35 H -0.002 1.002 36 H 0.036 0.964 37 H 0.067 0.933 38 H 0.145 0.855 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.124 0.876 42 H 0.076 0.924 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.601 4.485 12.840 15.581 hybrid contribution -1.283 -1.598 -1.659 2.637 sum 6.317 2.887 11.181 13.163 Atomic orbital electron populations 1.21761 0.91623 1.03513 1.03060 1.23016 0.96478 0.80213 1.01124 1.86762 1.23907 1.32378 1.82682 1.25235 0.80936 0.93874 0.71177 1.90559 1.61127 1.44141 1.46961 1.22786 0.95754 0.82863 1.00507 1.61113 1.16941 1.44035 1.05539 1.21804 0.86913 0.98761 0.95634 0.92334 1.21867 1.01739 0.96424 0.98955 1.21732 0.97803 0.98533 0.96453 1.19024 0.93932 0.93762 0.93813 1.21706 1.23705 0.97975 1.14373 0.93039 1.25767 0.98128 0.95097 0.99966 1.70091 1.43834 1.03460 1.38761 0.85663 0.79519 0.77445 0.79677 1.20387 1.21022 1.19083 1.23136 0.96544 1.03139 0.90990 1.22811 0.97819 1.01322 0.94880 1.22995 0.89252 1.03602 0.98489 0.90675 0.93255 0.88876 0.93869 0.90348 0.84203 0.91054 0.92341 0.92290 0.92663 0.93312 1.00151 0.96360 0.93307 0.85523 0.91235 0.91180 0.87552 0.92400 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 10.04 71.98 0.72 -4.12 16 2 C 0.07 2.36 6.19 71.98 0.45 2.81 16 3 O -0.34 -13.17 5.58 -51.45 -0.29 -13.46 16 4 C 0.45 16.43 7.01 71.24 0.50 16.93 16 5 O -0.54 -21.71 15.13 21.97 0.33 -21.38 16 6 C 0.07 2.23 1.05 3.31 0.00 2.23 16 7 N -0.64 -20.80 6.20 -449.36 -2.79 -23.58 16 8 C 0.08 2.55 1.96 44.92 0.09 2.64 16 9 H 0.06 2.09 5.19 -2.39 -0.01 2.08 16 10 C -0.13 -3.34 9.32 71.98 0.67 -2.66 16 11 C -0.11 -4.32 4.67 30.60 0.14 -4.18 16 12 C 0.03 1.60 4.28 29.85 0.13 1.73 16 13 C -0.54 -30.23 9.11 25.60 0.23 -29.99 16 14 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 15 C 0.01 0.49 5.46 84.65 0.46 0.95 16 16 N -0.92 -54.59 13.29 21.45 0.28 -54.31 16 17 Si 0.95 44.29 29.54 68.60 2.03 46.32 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 C -0.10 -2.21 5.95 31.18 0.19 -2.03 16 22 C -0.13 -2.70 7.70 31.18 0.24 -2.46 16 23 C -0.11 -2.67 7.23 31.12 0.22 -2.45 16 24 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 25 H 0.05 2.13 6.48 -2.39 -0.02 2.12 16 26 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 27 H 0.04 1.76 8.13 -2.39 -0.02 1.74 16 28 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16 29 H 0.34 13.01 6.54 -89.69 -0.59 12.42 16 30 H 0.07 1.50 5.44 -2.39 -0.01 1.48 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H -0.02 -1.10 6.51 -2.39 -0.02 -1.11 16 36 H 0.02 0.97 5.01 -2.39 -0.01 0.96 16 37 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 38 H 0.13 2.32 6.58 -2.39 -0.02 2.31 16 39 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 40 H 0.07 1.67 7.65 -2.39 -0.02 1.65 16 41 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.68 7.62 -2.39 -0.02 1.66 16 43 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -64.80 333.60 4.02 -60.78 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.41 Total: 26.22 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 4.05 Total: -20.59 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -2.50 Total: -77.89 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: 0.05 Total: -34.83 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -64.80 4.02 -60.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.549 kcal (2) G-P(sol) polarization free energy of solvation -64.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds