Wall clock time and date at job start Mon Mar 30 2020 01:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45208 * 109.47111 * 2 1 4 4 C 1.34218 * 117.00267 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00361 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00145 * 180.02562 * 4 3 2 7 7 H 1.08998 * 112.85001 * 311.19655 * 6 4 3 8 8 C 1.54052 * 113.69740 * 82.46737 * 6 4 3 9 9 C 1.53781 * 86.98687 * 139.99098 * 8 6 4 10 10 H 1.09002 * 113.61445 * 89.16393 * 9 8 6 11 11 N 1.46900 * 113.61428 * 219.98120 * 9 8 6 12 12 C 1.46895 * 110.99990 * 254.13870 * 11 9 8 13 13 H 1.09006 * 109.47186 * 324.99790 * 12 11 9 14 14 C 1.52999 * 109.47484 * 85.00049 * 12 11 9 15 15 C 1.53010 * 109.47078 * 205.00342 * 12 11 9 16 16 C 1.52994 * 109.47154 * 64.99451 * 15 12 11 17 17 C 1.50701 * 109.47082 * 180.02562 * 16 15 12 18 18 H 1.08007 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00128 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99713 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00237 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46683 * 90.00139 * 21 19 17 23 23 H 1.48492 * 109.47629 * 210.00403 * 21 19 17 24 24 H 1.48502 * 109.46938 * 330.00886 * 21 19 17 25 25 C 1.53783 * 113.61686 * 180.02562 * 6 4 3 26 26 H 1.09009 * 109.46563 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47245 * 299.99552 * 1 2 3 28 28 H 1.08998 * 109.46879 * 60.00203 * 1 2 3 29 29 H 1.09005 * 109.47459 * 240.00490 * 2 1 3 30 30 H 1.09002 * 109.47594 * 119.99789 * 2 1 3 31 31 H 1.08999 * 113.60931 * 25.48476 * 8 6 4 32 32 H 1.08998 * 113.69722 * 254.50559 * 8 6 4 33 33 H 1.00907 * 110.99969 * 130.18396 * 11 9 8 34 34 H 1.08999 * 109.47321 * 179.97438 * 14 12 11 35 35 H 1.09004 * 109.46668 * 299.99959 * 14 12 11 36 36 H 1.08994 * 109.46725 * 59.99824 * 14 12 11 37 37 H 1.09001 * 109.46942 * 185.00408 * 15 12 11 38 38 H 1.09003 * 109.46412 * 304.99688 * 15 12 11 39 39 H 1.08996 * 109.47517 * 300.00387 * 16 15 12 40 40 H 1.09003 * 109.47268 * 60.00761 * 16 15 12 41 41 H 0.97004 * 119.99972 * 180.02562 * 20 19 17 42 42 H 1.08992 * 113.61796 * 105.38373 * 25 6 4 43 43 H 1.09000 * 113.61157 * 334.47793 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0808 0.5868 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.4713 3.5817 -0.7546 8 6 3.9858 3.5799 1.3998 9 6 5.3559 4.1439 0.9879 10 1 5.2990 5.1179 0.5019 11 7 6.3574 4.0999 2.0617 12 6 6.5946 5.4396 2.6155 13 1 6.5189 6.1804 1.8195 14 6 5.5495 5.7390 3.6920 15 6 7.9934 5.4958 3.2330 16 6 9.0434 5.3202 2.1342 17 6 10.4211 5.3749 2.7425 18 1 10.5362 5.5209 3.8065 19 6 11.5346 5.2398 1.9407 20 7 12.7369 5.2871 2.4718 21 14 11.3356 4.9880 0.1005 22 1 11.3124 6.3078 -0.5799 23 1 12.4733 4.1852 -0.4152 24 1 10.0627 4.2712 -0.1662 25 6 5.4581 2.9683 0.0011 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0384 2.8543 2.2115 32 1 3.2296 4.3474 1.5651 33 1 7.2180 3.6853 1.7367 34 1 5.7258 6.7329 4.1032 35 1 4.5530 5.6989 3.2520 36 1 5.6253 4.9982 4.4879 37 1 8.1364 6.4597 3.7216 38 1 8.0987 4.6971 3.9672 39 1 8.9004 4.3564 1.6456 40 1 8.9381 6.1189 1.3999 41 1 13.5203 5.1924 1.9077 42 1 5.8893 3.2424 -0.9617 43 1 5.9126 2.0758 0.4310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:52 Heat of formation + Delta-G solvation = -86.989969 kcal Electronic energy + Delta-G solvation = -20643.086559 eV Core-core repulsion = 17495.299233 eV Total energy + Delta-G solvation = -3147.787326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.92033 -38.94062 -36.82739 -36.00569 -32.94289 -32.04942 -30.73726 -29.35724 -26.27852 -25.81302 -25.10336 -23.22977 -21.39421 -20.92655 -19.89092 -19.27267 -17.98855 -16.85724 -16.79547 -16.61320 -15.58871 -15.17770 -14.88339 -14.32005 -14.20744 -13.65504 -13.37091 -13.13941 -12.80709 -12.56840 -12.49796 -12.39079 -12.12700 -12.03488 -11.85624 -11.81209 -11.45518 -11.22109 -11.12269 -10.87497 -10.79061 -10.64647 -10.49555 -10.20966 -9.94729 -9.75992 -9.44242 -9.17785 -8.54719 -8.17792 -6.04491 -4.02378 2.05440 2.46591 3.29178 3.37215 3.38966 4.22701 4.35596 4.42949 4.44403 4.59906 4.63543 4.67868 4.76986 4.86982 4.94005 5.28941 5.33876 5.38633 5.42459 5.43241 5.57196 5.61707 5.66888 5.70941 5.82069 5.86574 5.98611 6.06257 6.20357 6.25999 6.26713 6.41718 6.44537 6.73472 6.85084 7.27259 7.30271 7.52076 7.61967 7.72334 7.79798 8.54212 9.01100 9.57932 11.09082 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.003592 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.149550 B = 7793.600704 C = 8530.814992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.474 3.526 5 O -0.505 6.505 6 C -0.113 4.113 7 H 0.122 0.878 8 C -0.104 4.104 9 C 0.063 3.937 10 H 0.076 0.924 11 N -0.674 5.674 12 C 0.079 3.921 13 H 0.039 0.961 14 C -0.136 4.136 15 C -0.107 4.107 16 C -0.015 4.015 17 C -0.518 4.518 18 H 0.072 0.928 19 C 0.065 3.935 20 N -0.903 5.903 21 Si 0.881 3.119 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.266 1.266 25 C -0.125 4.125 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.354 0.646 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.014 0.986 40 H 0.007 0.993 41 H 0.263 0.737 42 H 0.076 0.924 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.713 -5.659 -5.879 26.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.276 6.276 4 C 0.316 3.684 5 O -0.392 6.392 6 C -0.132 4.132 7 H 0.140 0.860 8 C -0.143 4.143 9 C -0.047 4.047 10 H 0.094 0.906 11 N -0.309 5.309 12 C -0.030 4.030 13 H 0.057 0.943 14 C -0.194 4.194 15 C -0.145 4.145 16 C -0.052 4.052 17 C -0.556 4.556 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.542 5.542 21 Si 0.708 3.292 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.191 1.191 25 C -0.162 4.162 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.177 0.823 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.032 0.968 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.750 -6.168 -5.428 26.078 hybrid contribution 0.578 0.077 -1.785 1.878 sum -24.172 -6.091 -7.213 25.950 Atomic orbital electron populations 1.21802 0.92656 1.02925 1.03520 1.23023 0.95347 0.80475 1.02606 1.86521 1.24855 1.32174 1.84046 1.23631 0.80280 0.92571 0.71877 1.90672 1.60445 1.43004 1.45081 1.22483 0.97718 0.90654 1.02375 0.85994 1.23102 0.97680 0.99868 0.93624 1.22956 0.93395 0.96979 0.91399 0.90588 1.60670 1.14764 1.22148 1.33279 1.21741 0.96374 0.88636 0.96283 0.94294 1.21778 0.97942 1.00721 0.98912 1.21678 0.91547 1.01790 0.99514 1.19609 0.95270 0.95682 0.94663 1.21130 0.88687 1.49527 0.96296 0.91008 1.25051 0.95238 0.94702 0.98574 1.69919 0.97711 1.50849 1.35761 0.86768 0.77913 0.78436 0.86058 1.20451 1.21386 1.19112 1.23273 0.92178 1.00350 1.00446 0.90293 0.91410 0.91531 0.91340 0.91208 0.88772 0.90591 0.82319 0.92973 0.93614 0.92309 0.92114 0.91833 0.96825 0.97426 0.92759 0.90521 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.29 37.16 0.38 -0.51 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.36 -3.90 10.22 -39.23 -0.40 -4.30 16 4 C 0.47 5.82 7.49 36.01 0.27 6.09 16 5 O -0.50 -7.71 15.65 -18.75 -0.29 -8.01 16 6 C -0.11 -1.18 4.26 -90.82 -0.39 -1.56 16 7 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 8 C -0.10 -1.12 7.32 -25.78 -0.19 -1.31 16 9 C 0.06 0.79 3.94 -66.88 -0.26 0.52 16 10 H 0.08 0.90 7.49 -51.93 -0.39 0.51 16 11 N -0.67 -10.24 6.36 -98.86 -0.63 -10.87 16 12 C 0.08 1.25 2.64 -67.71 -0.18 1.07 16 13 H 0.04 0.62 7.47 -51.93 -0.39 0.23 16 14 C -0.14 -1.83 9.42 37.16 0.35 -1.48 16 15 C -0.11 -2.09 4.74 -26.73 -0.13 -2.21 16 16 C -0.01 -0.35 3.87 -27.89 -0.11 -0.45 16 17 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 18 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 20 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 21 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 25 C -0.12 -1.51 7.00 -25.90 -0.18 -1.69 16 26 H 0.08 0.33 8.14 -51.92 -0.42 -0.10 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.35 5.99 6.30 -39.29 -0.25 5.74 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.55 7.94 -51.93 -0.41 0.14 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.01 0.32 5.48 -51.93 -0.28 0.03 16 40 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.10 1.47 7.44 -51.93 -0.39 1.09 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -31.91 348.48 -8.18 -40.09 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.58 Total: 2.09 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -0.63 Total: -14.08 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.14 Total: -38.14 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.69 Total: -12.31 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.91 -8.18 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.904 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds