Wall clock time and date at job start Mon Mar 30 2020 01:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45208 * 109.47111 * 2 1 4 4 C 1.34218 * 117.00267 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00361 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00145 * 180.02562 * 4 3 2 7 7 H 1.08998 * 112.85001 * 311.19655 * 6 4 3 8 8 C 1.54052 * 113.69740 * 82.46737 * 6 4 3 9 9 C 1.53781 * 86.98687 * 139.99098 * 8 6 4 10 10 H 1.09002 * 113.61445 * 89.16393 * 9 8 6 11 11 N 1.46900 * 113.61428 * 219.98120 * 9 8 6 12 12 C 1.46895 * 110.99990 * 254.13870 * 11 9 8 13 13 H 1.09006 * 109.47186 * 324.99790 * 12 11 9 14 14 C 1.52999 * 109.47484 * 85.00049 * 12 11 9 15 15 C 1.53010 * 109.47078 * 205.00342 * 12 11 9 16 16 C 1.52994 * 109.47154 * 64.99451 * 15 12 11 17 17 C 1.50701 * 109.47082 * 180.02562 * 16 15 12 18 18 H 1.08007 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00128 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99713 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00237 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46683 * 90.00139 * 21 19 17 23 23 H 1.48492 * 109.47629 * 210.00403 * 21 19 17 24 24 H 1.48502 * 109.46938 * 330.00886 * 21 19 17 25 25 C 1.53783 * 113.61686 * 180.02562 * 6 4 3 26 26 H 1.09009 * 109.46563 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47245 * 299.99552 * 1 2 3 28 28 H 1.08998 * 109.46879 * 60.00203 * 1 2 3 29 29 H 1.09005 * 109.47459 * 240.00490 * 2 1 3 30 30 H 1.09002 * 109.47594 * 119.99789 * 2 1 3 31 31 H 1.08999 * 113.60931 * 25.48476 * 8 6 4 32 32 H 1.08998 * 113.69722 * 254.50559 * 8 6 4 33 33 H 1.00907 * 110.99969 * 130.18396 * 11 9 8 34 34 H 1.08999 * 109.47321 * 179.97438 * 14 12 11 35 35 H 1.09004 * 109.46668 * 299.99959 * 14 12 11 36 36 H 1.08994 * 109.46725 * 59.99824 * 14 12 11 37 37 H 1.09001 * 109.46942 * 185.00408 * 15 12 11 38 38 H 1.09003 * 109.46412 * 304.99688 * 15 12 11 39 39 H 1.08996 * 109.47517 * 300.00387 * 16 15 12 40 40 H 1.09003 * 109.47268 * 60.00761 * 16 15 12 41 41 H 0.97004 * 119.99972 * 180.02562 * 20 19 17 42 42 H 1.08992 * 113.61796 * 105.38373 * 25 6 4 43 43 H 1.09000 * 113.61157 * 334.47793 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0808 0.5868 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.4713 3.5817 -0.7546 8 6 3.9858 3.5799 1.3998 9 6 5.3559 4.1439 0.9879 10 1 5.2990 5.1179 0.5019 11 7 6.3574 4.0999 2.0617 12 6 6.5946 5.4396 2.6155 13 1 6.5189 6.1804 1.8195 14 6 5.5495 5.7390 3.6920 15 6 7.9934 5.4958 3.2330 16 6 9.0434 5.3202 2.1342 17 6 10.4211 5.3749 2.7425 18 1 10.5362 5.5209 3.8065 19 6 11.5346 5.2398 1.9407 20 7 12.7369 5.2871 2.4718 21 14 11.3356 4.9880 0.1005 22 1 11.3124 6.3078 -0.5799 23 1 12.4733 4.1852 -0.4152 24 1 10.0627 4.2712 -0.1662 25 6 5.4581 2.9683 0.0011 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0384 2.8543 2.2115 32 1 3.2296 4.3474 1.5651 33 1 7.2180 3.6853 1.7367 34 1 5.7258 6.7329 4.1032 35 1 4.5530 5.6989 3.2520 36 1 5.6253 4.9982 4.4879 37 1 8.1364 6.4597 3.7216 38 1 8.0987 4.6971 3.9672 39 1 8.9004 4.3564 1.6456 40 1 8.9381 6.1189 1.3999 41 1 13.5203 5.1924 1.9077 42 1 5.8893 3.2424 -0.9617 43 1 5.9126 2.0758 0.4310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:52 Heat of formation + Delta-G solvation = -106.698810 kcal Electronic energy + Delta-G solvation = -20643.941199 eV Core-core repulsion = 17495.299233 eV Total energy + Delta-G solvation = -3148.641966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.84173 -39.90781 -37.88787 -37.20815 -34.97088 -32.76196 -32.34706 -30.63460 -27.41788 -26.82990 -26.56387 -23.92338 -22.93733 -22.04045 -21.20460 -20.31299 -18.96770 -18.84489 -17.74777 -17.51753 -16.57050 -16.46070 -16.18223 -15.94666 -15.16522 -14.89640 -14.71769 -14.27273 -14.19222 -13.71140 -13.49912 -13.34165 -13.22985 -13.14892 -12.98678 -12.84828 -12.83438 -12.50799 -12.30468 -12.08899 -11.90234 -11.74432 -11.60630 -11.54236 -11.37876 -11.36357 -11.22903 -10.98571 -10.76643 -9.31677 -8.29831 -6.33777 1.12024 1.33963 1.36890 1.47927 1.67134 2.35071 3.05257 3.26712 3.42216 3.49520 3.75452 3.87839 3.98592 4.05915 4.08827 4.12767 4.33537 4.33586 4.45259 4.55220 4.74577 4.76093 4.81988 4.85764 4.91267 4.91756 4.97706 5.01520 5.03590 5.09884 5.15104 5.19147 5.31874 5.45068 5.46329 5.55302 5.59795 5.67641 6.28975 6.33153 6.45390 6.71380 6.74849 7.30601 8.87262 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.003592 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.149550 B = 7793.600704 C = 8530.814992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.358 6.358 4 C 0.473 3.527 5 O -0.543 6.543 6 C -0.101 4.101 7 H 0.155 0.845 8 C -0.096 4.096 9 C 0.060 3.940 10 H 0.093 0.907 11 N -0.683 5.683 12 C 0.088 3.912 13 H 0.047 0.953 14 C -0.130 4.130 15 C -0.101 4.101 16 C -0.009 4.009 17 C -0.531 4.531 18 H 0.028 0.972 19 C 0.001 3.999 20 N -0.953 5.953 21 Si 0.953 3.047 22 H -0.266 1.266 23 H -0.287 1.287 24 H -0.244 1.244 25 C -0.130 4.130 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.341 0.659 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.021 0.979 40 H 0.016 0.984 41 H 0.265 0.735 42 H 0.085 0.915 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.676 -5.158 -7.912 29.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.274 6.274 4 C 0.318 3.682 5 O -0.433 6.433 6 C -0.121 4.121 7 H 0.172 0.828 8 C -0.134 4.134 9 C -0.050 4.050 10 H 0.111 0.889 11 N -0.317 5.317 12 C -0.022 4.022 13 H 0.065 0.935 14 C -0.187 4.187 15 C -0.139 4.139 16 C -0.046 4.046 17 C -0.569 4.569 18 H 0.047 0.953 19 C -0.196 4.196 20 N -0.594 5.594 21 Si 0.776 3.224 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.167 1.167 25 C -0.168 4.168 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.162 0.838 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.767 -5.655 -7.448 29.299 hybrid contribution 1.510 -0.111 -1.049 1.842 sum -26.256 -5.766 -8.497 28.193 Atomic orbital electron populations 1.21815 0.90213 1.04330 1.03834 1.23284 0.97259 0.79500 1.02281 1.86522 1.24007 1.33412 1.83501 1.24027 0.80508 0.92910 0.70772 1.90661 1.61315 1.44349 1.46952 1.22546 0.96423 0.90002 1.03093 0.82764 1.23019 0.97301 0.99889 0.93193 1.23108 0.93237 0.97774 0.90877 0.88941 1.60733 1.14596 1.21601 1.34736 1.21638 0.94308 0.89284 0.96951 0.93480 1.21720 0.98210 1.00839 0.97968 1.21557 0.93250 1.00902 0.98171 1.19531 0.93271 0.96136 0.95684 1.21522 0.91723 1.49010 0.94689 0.95322 1.26075 0.94660 0.94369 1.04452 1.70084 0.98838 1.52496 1.38007 0.85613 0.78779 0.79049 0.78917 1.19150 1.21275 1.16694 1.23233 0.93607 0.99263 1.00677 0.88372 0.91218 0.91018 0.91491 0.91849 0.90484 0.88116 0.83770 0.92211 0.91441 0.93164 0.92622 0.93378 0.96106 0.96615 0.92574 0.89590 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 71.98 0.74 -0.64 16 2 C 0.05 0.82 6.19 71.98 0.45 1.26 16 3 O -0.36 -7.16 10.22 -51.30 -0.52 -7.68 16 4 C 0.47 10.99 7.49 71.24 0.53 11.52 16 5 O -0.54 -16.50 15.65 21.95 0.34 -16.16 16 6 C -0.10 -1.84 4.26 -10.92 -0.05 -1.89 16 7 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 8 C -0.10 -1.78 7.32 31.21 0.23 -1.55 16 9 C 0.06 1.32 3.94 45.45 0.18 1.50 16 10 H 0.09 1.79 7.49 -2.39 -0.02 1.77 16 11 N -0.68 -19.60 6.36 -466.70 -2.97 -22.57 16 12 C 0.09 2.58 2.64 44.92 0.12 2.70 16 13 H 0.05 1.33 7.47 -2.38 -0.02 1.31 16 14 C -0.13 -3.16 9.42 71.98 0.68 -2.49 16 15 C -0.10 -3.89 4.74 30.60 0.15 -3.74 16 16 C -0.01 -0.40 3.87 29.85 0.12 -0.29 16 17 C -0.53 -31.06 9.66 25.60 0.25 -30.81 16 18 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 19 C 0.00 0.05 5.47 84.65 0.46 0.51 16 20 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 21 Si 0.95 44.56 27.47 68.60 1.88 46.44 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 25 C -0.13 -2.91 7.00 31.13 0.22 -2.69 16 26 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 1.10 8.13 -2.38 -0.02 1.08 16 30 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 31 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.34 11.20 6.30 -89.69 -0.57 10.64 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.37 7.94 -2.38 -0.02 1.35 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.02 0.93 5.48 -2.39 -0.01 0.92 16 40 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16 41 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 42 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.08 2.21 7.44 -2.39 -0.02 2.19 16 Total: -1.00 -71.10 348.48 3.45 -67.65 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.35 Total: 19.50 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 4.07 Total: -26.62 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.67 Total: -83.14 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.18 Total: -23.84 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -71.10 3.45 -67.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.053 kcal (2) G-P(sol) polarization free energy of solvation -71.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds