Wall clock time and date at job start Mon Mar 30 2020 01:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.47128 * 2 1 4 4 C 1.34230 * 116.99824 * 184.36127 * 3 2 1 5 5 O 1.20830 * 120.00075 * 4.78944 * 4 3 2 6 6 C 1.50698 * 119.99888 * 184.78542 * 4 3 2 7 7 C 1.53005 * 109.47052 * 174.59362 * 6 4 3 8 8 N 1.46902 * 115.54736 * 298.60690 * 7 6 4 9 9 C 1.46900 * 111.00081 * 304.26781 * 8 7 6 10 10 H 1.08998 * 109.46970 * 48.59650 * 9 8 7 11 11 C 1.52998 * 109.47069 * 288.59510 * 9 8 7 12 12 C 1.52999 * 109.47107 * 168.59715 * 9 8 7 13 13 C 1.53003 * 109.47122 * 297.41119 * 12 9 8 14 14 C 1.50700 * 109.47425 * 184.69163 * 13 12 9 15 15 H 1.08003 * 119.99549 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00142 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99959 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46969 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46559 * 120.00399 * 18 16 14 21 21 H 1.48494 * 109.47404 * 240.00447 * 18 16 14 22 22 C 1.52997 * 117.50037 * 84.27500 * 7 6 4 23 23 C 1.52998 * 117.49938 * 152.93891 * 7 6 4 24 24 H 1.08999 * 109.47171 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46987 * 300.00236 * 1 2 3 26 26 H 1.08999 * 109.46880 * 59.99611 * 1 2 3 27 27 H 1.09007 * 109.46910 * 240.00179 * 2 1 3 28 28 H 1.08999 * 109.46880 * 120.00389 * 2 1 3 29 29 H 1.09002 * 109.47182 * 54.59829 * 6 4 3 30 30 H 1.08999 * 109.47366 * 294.59251 * 6 4 3 31 31 H 1.00906 * 110.99510 * 180.31933 * 8 7 6 32 32 H 1.08995 * 109.47720 * 305.63058 * 11 9 8 33 33 H 1.08999 * 109.47332 * 65.64502 * 11 9 8 34 34 H 1.09005 * 109.46619 * 185.63654 * 11 9 8 35 35 H 1.08991 * 109.47628 * 177.41313 * 12 9 8 36 36 H 1.09001 * 109.47121 * 57.41045 * 12 9 8 37 37 H 1.09010 * 109.47076 * 64.69318 * 13 12 9 38 38 H 1.08995 * 109.47284 * 304.69740 * 13 12 9 39 39 H 0.97003 * 120.00184 * 179.97438 * 17 16 14 40 40 H 1.09000 * 117.50102 * 215.00303 * 22 7 6 41 41 H 1.09009 * 117.49431 * 0.02709 * 22 7 6 42 42 H 1.09004 * 117.49851 * 359.97438 * 23 7 6 43 43 H 1.08994 * 117.50013 * 144.99696 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3415 1.5459 -0.0910 5 8 4.0680 0.5945 -0.2550 6 6 3.9257 2.9313 0.0115 7 6 5.4531 2.8419 0.0121 8 7 6.0432 2.0895 1.1273 9 6 5.6040 2.6326 2.4196 10 1 4.5212 2.7570 2.4123 11 6 6.2717 3.9887 2.6563 12 6 5.9989 1.6674 3.5391 13 6 5.2805 0.3316 3.3378 14 6 5.5784 -0.5793 4.5009 15 1 6.2159 -0.2392 5.3036 16 6 5.0361 -1.8463 4.5407 17 7 4.2593 -2.2601 3.5635 18 14 5.4047 -2.9751 5.9828 19 1 6.2973 -2.2767 6.9424 20 1 4.1359 -3.3397 6.6628 21 1 6.0735 -4.2058 5.4897 22 6 6.1567 2.7628 -1.3442 23 6 6.2316 4.0483 -0.5165 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 3.5888 3.4002 0.9360 30 1 3.5970 3.5281 -0.8394 31 1 7.0502 2.0784 1.0631 32 1 7.3526 3.8826 2.5644 33 1 5.9126 4.7045 1.9169 34 1 6.0255 4.3452 3.6566 35 1 5.7141 2.0915 4.5019 36 1 7.0769 1.5071 3.5173 37 1 5.6280 -0.1324 2.4147 38 1 4.2058 0.5027 3.2762 39 1 3.8781 -3.1517 3.5914 40 1 7.0575 2.1525 -1.4091 41 1 5.5313 2.7749 -2.2370 42 1 5.6555 4.9056 -0.8651 43 1 7.1816 4.2837 -0.0369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:27 Heat of formation + Delta-G solvation = -76.572828 kcal Electronic energy + Delta-G solvation = -21803.134077 eV Core-core repulsion = 18655.798472 eV Total energy + Delta-G solvation = -3147.335605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12307 -38.59707 -35.97047 -35.28143 -32.75612 -31.56855 -29.97564 -29.51666 -28.39629 -24.99433 -23.21996 -22.34586 -21.48703 -21.11252 -19.83308 -19.04530 -17.16905 -16.49501 -16.07369 -15.91497 -15.40558 -15.04178 -14.34463 -14.18243 -13.83212 -13.13593 -13.03564 -12.90532 -12.59405 -12.39199 -12.33083 -12.24265 -11.90326 -11.48761 -11.43179 -11.40990 -11.23247 -11.13269 -10.85065 -10.72122 -10.40044 -10.18561 -10.05862 -9.92180 -9.77675 -9.57317 -9.13048 -8.80582 -8.18203 -7.70927 -5.82476 -3.84109 2.78673 3.04413 3.38532 3.45691 3.49718 3.92779 4.36804 4.57756 4.66527 4.81084 4.93738 5.21125 5.24108 5.33890 5.36660 5.49125 5.52189 5.57813 5.59954 5.64386 5.66099 5.72272 5.83331 5.95171 6.01164 6.11551 6.13532 6.16317 6.19375 6.29503 6.41131 6.72635 6.89913 6.97785 7.33343 7.55622 7.81168 7.90624 8.13528 8.32201 8.37283 8.62850 9.25658 9.77973 11.27856 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013177 B = 0.006738 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.381178 B = 4154.408653 C = 5733.120101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 O -0.372 6.372 4 C 0.454 3.546 5 O -0.458 6.458 6 C -0.068 4.068 7 C 0.077 3.923 8 N -0.621 5.621 9 C 0.083 3.917 10 H 0.072 0.928 11 C -0.183 4.183 12 C -0.102 4.102 13 C 0.034 3.966 14 C -0.520 4.520 15 H 0.050 0.950 16 C 0.057 3.943 17 N -0.889 5.889 18 Si 0.884 3.116 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.285 1.285 22 C -0.162 4.162 23 C -0.217 4.217 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.341 0.659 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.034 0.966 38 H 0.004 0.996 39 H 0.256 0.744 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 12.907 -9.853 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.012 4.012 3 O -0.291 6.291 4 C 0.293 3.707 5 O -0.341 6.341 6 C -0.106 4.106 7 C -0.017 4.017 8 N -0.249 5.249 9 C -0.026 4.026 10 H 0.090 0.910 11 C -0.242 4.242 12 C -0.139 4.139 13 C -0.003 4.003 14 C -0.558 4.558 15 H 0.068 0.932 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.713 3.287 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.200 4.200 23 C -0.258 4.258 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.161 0.839 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.023 0.977 39 H 0.066 0.934 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.091 11.887 -9.957 15.811 hybrid contribution 0.748 -0.040 0.848 1.131 sum -2.343 11.847 -9.109 15.127 Atomic orbital electron populations 1.21773 0.93342 1.02657 1.02776 1.22983 0.94573 0.80214 1.03383 1.86393 1.25329 1.32541 1.84838 1.23193 0.80438 0.92313 0.74719 1.90766 1.59966 1.42277 1.41096 1.20784 0.92387 0.92339 1.05092 1.21084 0.90948 0.96342 0.93280 1.60256 1.13194 1.51834 0.99621 1.21787 0.99311 0.91962 0.89573 0.90954 1.22623 1.00724 0.99173 1.01666 1.21669 1.00095 0.97731 0.94455 1.18947 0.94532 0.89582 0.97245 1.21395 1.29216 0.98865 1.06333 0.93170 1.24994 0.95503 0.98049 0.95822 1.70014 1.32976 1.18247 1.31666 0.86663 0.77926 0.81046 0.83084 1.19936 1.21227 1.21171 1.23071 1.03080 0.99468 0.94361 1.23767 1.02948 0.92980 1.06067 0.90498 0.91622 0.92218 0.91699 0.89991 0.87752 0.87961 0.83925 0.93137 0.93038 0.92469 0.93268 0.93674 0.94754 0.97734 0.93445 0.88429 0.88801 0.89009 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.29 37.16 0.38 -1.41 16 2 C 0.06 1.00 6.27 37.16 0.23 1.23 16 3 O -0.37 -6.23 10.22 -39.26 -0.40 -6.63 16 4 C 0.45 7.98 7.86 36.00 0.28 8.27 16 5 O -0.46 -9.88 15.30 -18.75 -0.29 -10.16 16 6 C -0.07 -0.91 5.27 -27.88 -0.15 -1.06 16 7 C 0.08 1.06 0.97 -131.60 -0.13 0.93 16 8 N -0.62 -10.49 5.24 -93.05 -0.49 -10.98 16 9 C 0.08 1.41 2.46 -67.71 -0.17 1.24 16 10 H 0.07 1.29 6.14 -51.93 -0.32 0.97 16 11 C -0.18 -2.45 8.71 37.16 0.32 -2.13 16 12 C -0.10 -2.15 4.85 -26.73 -0.13 -2.28 16 13 C 0.03 0.92 4.78 -27.88 -0.13 0.79 16 14 C -0.52 -15.38 9.11 -34.44 -0.31 -15.69 16 15 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.80 13.29 55.43 0.74 -27.06 16 18 Si 0.88 22.46 29.54 -169.99 -5.02 17.44 16 19 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 C -0.16 -2.00 10.08 -26.69 -0.27 -2.27 16 23 C -0.22 -2.34 8.45 -26.69 -0.23 -2.56 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.02 7.99 -51.92 -0.41 0.60 16 28 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.10 1.33 6.61 -51.93 -0.34 0.99 16 30 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16 31 H 0.34 5.45 8.55 -39.29 -0.34 5.12 16 32 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 33 H 0.05 0.61 6.66 -51.93 -0.35 0.26 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.03 1.03 7.82 -51.92 -0.41 0.62 16 38 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.09 0.99 8.04 -51.93 -0.42 0.57 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -33.84 353.11 -8.14 -41.98 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.62 Total: 3.40 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -0.39 Total: -13.32 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.25 Total: -38.04 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.69 Total: -16.79 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.84 -8.14 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.593 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds