Wall clock time and date at job start Mon Mar 30 2020 01:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.47128 * 2 1 4 4 C 1.34230 * 116.99824 * 184.36127 * 3 2 1 5 5 O 1.20830 * 120.00075 * 4.78944 * 4 3 2 6 6 C 1.50698 * 119.99888 * 184.78542 * 4 3 2 7 7 C 1.53005 * 109.47052 * 174.59362 * 6 4 3 8 8 N 1.46902 * 115.54736 * 298.60690 * 7 6 4 9 9 C 1.46900 * 111.00081 * 304.26781 * 8 7 6 10 10 H 1.08998 * 109.46970 * 48.59650 * 9 8 7 11 11 C 1.52998 * 109.47069 * 288.59510 * 9 8 7 12 12 C 1.52999 * 109.47107 * 168.59715 * 9 8 7 13 13 C 1.53003 * 109.47122 * 297.41119 * 12 9 8 14 14 C 1.50700 * 109.47425 * 184.69163 * 13 12 9 15 15 H 1.08003 * 119.99549 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00142 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99959 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46969 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46559 * 120.00399 * 18 16 14 21 21 H 1.48494 * 109.47404 * 240.00447 * 18 16 14 22 22 C 1.52997 * 117.50037 * 84.27500 * 7 6 4 23 23 C 1.52998 * 117.49938 * 152.93891 * 7 6 4 24 24 H 1.08999 * 109.47171 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46987 * 300.00236 * 1 2 3 26 26 H 1.08999 * 109.46880 * 59.99611 * 1 2 3 27 27 H 1.09007 * 109.46910 * 240.00179 * 2 1 3 28 28 H 1.08999 * 109.46880 * 120.00389 * 2 1 3 29 29 H 1.09002 * 109.47182 * 54.59829 * 6 4 3 30 30 H 1.08999 * 109.47366 * 294.59251 * 6 4 3 31 31 H 1.00906 * 110.99510 * 180.31933 * 8 7 6 32 32 H 1.08995 * 109.47720 * 305.63058 * 11 9 8 33 33 H 1.08999 * 109.47332 * 65.64502 * 11 9 8 34 34 H 1.09005 * 109.46619 * 185.63654 * 11 9 8 35 35 H 1.08991 * 109.47628 * 177.41313 * 12 9 8 36 36 H 1.09001 * 109.47121 * 57.41045 * 12 9 8 37 37 H 1.09010 * 109.47076 * 64.69318 * 13 12 9 38 38 H 1.08995 * 109.47284 * 304.69740 * 13 12 9 39 39 H 0.97003 * 120.00184 * 179.97438 * 17 16 14 40 40 H 1.09000 * 117.50102 * 215.00303 * 22 7 6 41 41 H 1.09009 * 117.49431 * 0.02709 * 22 7 6 42 42 H 1.09004 * 117.49851 * 359.97438 * 23 7 6 43 43 H 1.08994 * 117.50013 * 144.99696 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3415 1.5459 -0.0910 5 8 4.0680 0.5945 -0.2550 6 6 3.9257 2.9313 0.0115 7 6 5.4531 2.8419 0.0121 8 7 6.0432 2.0895 1.1273 9 6 5.6040 2.6326 2.4196 10 1 4.5212 2.7570 2.4123 11 6 6.2717 3.9887 2.6563 12 6 5.9989 1.6674 3.5391 13 6 5.2805 0.3316 3.3378 14 6 5.5784 -0.5793 4.5009 15 1 6.2159 -0.2392 5.3036 16 6 5.0361 -1.8463 4.5407 17 7 4.2593 -2.2601 3.5635 18 14 5.4047 -2.9751 5.9828 19 1 6.2973 -2.2767 6.9424 20 1 4.1359 -3.3397 6.6628 21 1 6.0735 -4.2058 5.4897 22 6 6.1567 2.7628 -1.3442 23 6 6.2316 4.0483 -0.5165 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 3.5888 3.4002 0.9360 30 1 3.5970 3.5281 -0.8394 31 1 7.0502 2.0784 1.0631 32 1 7.3526 3.8826 2.5644 33 1 5.9126 4.7045 1.9169 34 1 6.0255 4.3452 3.6566 35 1 5.7141 2.0915 4.5019 36 1 7.0769 1.5071 3.5173 37 1 5.6280 -0.1324 2.4147 38 1 4.2058 0.5027 3.2762 39 1 3.8781 -3.1517 3.5914 40 1 7.0575 2.1525 -1.4091 41 1 5.5313 2.7749 -2.2370 42 1 5.6555 4.9056 -0.8651 43 1 7.1816 4.2837 -0.0369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:26 Heat of formation + Delta-G solvation = -98.125338 kcal Electronic energy + Delta-G solvation = -21804.068664 eV Core-core repulsion = 18655.798472 eV Total energy + Delta-G solvation = -3148.270192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.45825 -39.78915 -37.42606 -36.73246 -34.86557 -32.76733 -31.81987 -30.65544 -29.67421 -26.99156 -24.42262 -23.39080 -23.17198 -22.43472 -21.44135 -20.22845 -18.53567 -18.39004 -17.77373 -17.23689 -16.69995 -16.49939 -16.14368 -15.44798 -15.08137 -14.67096 -14.40525 -14.20280 -14.09077 -13.80618 -13.69685 -13.35038 -13.23012 -13.10935 -12.88864 -12.70090 -12.64654 -12.46023 -12.36379 -12.31243 -11.93683 -11.74779 -11.49980 -11.46785 -11.28098 -11.15075 -11.07103 -10.73156 -10.51491 -8.87403 -8.13902 -6.26202 1.36223 1.37650 1.41839 1.50597 1.80951 2.41338 2.92119 3.16842 3.25135 3.63264 3.77291 3.91356 4.00373 4.09447 4.12758 4.20570 4.37878 4.40082 4.46978 4.48545 4.66794 4.71997 4.76991 4.82618 4.89910 4.94738 5.02390 5.04281 5.08429 5.13920 5.17776 5.28097 5.31526 5.45889 5.57059 5.64078 5.87457 6.02950 6.31537 6.36459 6.60789 6.94646 6.98735 7.42042 8.96747 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013177 B = 0.006738 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.381178 B = 4154.408653 C = 5733.120101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.059 3.941 3 O -0.370 6.370 4 C 0.446 3.554 5 O -0.509 6.509 6 C -0.063 4.063 7 C 0.049 3.951 8 N -0.652 5.652 9 C 0.093 3.907 10 H 0.059 0.941 11 C -0.169 4.169 12 C -0.093 4.093 13 C 0.051 3.949 14 C -0.546 4.546 15 H 0.056 0.944 16 C -0.003 4.003 17 N -0.929 5.929 18 Si 0.962 3.038 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.280 1.280 22 C -0.170 4.170 23 C -0.178 4.178 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.112 0.888 30 H 0.144 0.856 31 H 0.342 0.658 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.046 0.954 37 H -0.006 1.006 38 H -0.033 1.033 39 H 0.259 0.741 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 15.120 -9.753 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.015 4.015 3 O -0.288 6.288 4 C 0.289 3.711 5 O -0.395 6.395 6 C -0.101 4.101 7 C -0.043 4.043 8 N -0.281 5.281 9 C -0.017 4.017 10 H 0.078 0.922 11 C -0.228 4.228 12 C -0.131 4.131 13 C 0.014 3.986 14 C -0.584 4.584 15 H 0.074 0.926 16 C -0.200 4.200 17 N -0.569 5.569 18 Si 0.787 3.213 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.206 1.206 22 C -0.207 4.207 23 C -0.217 4.217 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.130 0.870 30 H 0.162 0.838 31 H 0.161 0.839 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.013 0.987 38 H -0.014 1.014 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.139 0.861 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.892 14.136 -9.856 17.474 hybrid contribution 0.666 -0.782 0.766 1.282 sum -2.226 13.353 -9.090 16.306 Atomic orbital electron populations 1.21765 0.89704 1.04090 1.03902 1.23037 0.97413 0.79940 1.01062 1.86423 1.25323 1.32584 1.84462 1.24261 0.80210 0.93718 0.72930 1.90744 1.60905 1.44265 1.43611 1.20996 0.92139 0.89784 1.07165 1.21174 0.91152 0.99087 0.92933 1.60109 1.13417 1.54088 1.00467 1.21518 0.98886 0.92800 0.88469 0.92233 1.22459 1.00781 0.96833 1.02684 1.21511 0.99245 0.95654 0.96703 1.18667 0.92608 0.92489 0.94820 1.21860 1.29511 0.99847 1.07152 0.92555 1.26004 0.95043 0.99959 0.98995 1.70185 1.33907 1.18851 1.33955 0.85446 0.78192 0.78471 0.79194 1.18499 1.20256 1.20587 1.23134 1.02617 1.00836 0.94139 1.23787 1.02450 0.92378 1.03126 0.88950 0.91564 0.89889 0.91863 0.94560 0.86966 0.83814 0.83853 0.92365 0.90623 0.92028 0.92913 0.93502 0.98749 1.01436 0.93233 0.89644 0.87756 0.86113 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 10.29 71.98 0.74 -2.54 16 2 C 0.06 2.03 6.27 71.98 0.45 2.48 16 3 O -0.37 -12.75 10.22 -51.41 -0.53 -13.28 16 4 C 0.45 16.23 7.86 71.24 0.56 16.79 16 5 O -0.51 -23.38 15.30 21.95 0.34 -23.04 16 6 C -0.06 -1.62 5.27 29.85 0.16 -1.46 16 7 C 0.05 1.29 0.97 3.53 0.00 1.29 16 8 N -0.65 -22.29 5.24 -448.29 -2.35 -24.64 16 9 C 0.09 3.14 2.46 44.91 0.11 3.25 16 10 H 0.06 2.15 6.14 -2.39 -0.01 2.14 16 11 C -0.17 -4.08 8.71 71.98 0.63 -3.45 16 12 C -0.09 -4.04 4.85 30.60 0.15 -3.90 16 13 C 0.05 2.95 4.78 29.85 0.14 3.09 16 14 C -0.55 -33.31 9.11 25.60 0.23 -33.08 16 15 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 16 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 17 N -0.93 -60.54 13.29 21.45 0.28 -60.25 16 18 Si 0.96 46.86 29.54 68.60 2.03 48.89 16 19 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 22 C -0.17 -3.91 10.08 30.62 0.31 -3.60 16 23 C -0.18 -3.16 8.45 30.62 0.26 -2.90 16 24 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 2.13 7.99 -2.38 -0.02 2.11 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.11 2.70 6.61 -2.39 -0.02 2.68 16 30 H 0.14 2.43 8.11 -2.39 -0.02 2.41 16 31 H 0.34 11.03 8.55 -89.69 -0.77 10.27 16 32 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16 33 H 0.07 1.48 6.66 -2.39 -0.02 1.47 16 34 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H -0.01 -0.39 7.82 -2.38 -0.02 -0.41 16 38 H -0.03 -2.09 8.14 -2.39 -0.02 -2.11 16 39 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 42 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.10 1.72 8.04 -2.39 -0.02 1.70 16 Total: -1.00 -78.70 353.11 4.18 -74.52 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.21 Total: 21.52 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 4.20 Total: -23.72 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -2.06 Total: -84.90 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.19 Total: -36.32 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -78.70 4.18 -74.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.608 kcal (2) G-P(sol) polarization free energy of solvation -78.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds