Wall clock time and date at job start Mon Mar 30 2020 01:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.46995 * 2 1 4 4 C 1.34228 * 116.99946 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00232 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99807 * 180.02562 * 4 3 2 7 7 C 1.53008 * 109.47217 * 175.19693 * 6 4 3 8 8 N 1.46907 * 115.54761 * 293.65902 * 7 6 4 9 9 C 1.46899 * 110.99577 * 185.98156 * 8 7 6 10 10 H 1.09001 * 109.47455 * 355.09443 * 9 8 7 11 11 C 1.53000 * 109.47274 * 115.09858 * 9 8 7 12 12 C 1.53003 * 109.46784 * 235.09843 * 9 8 7 13 13 C 1.52995 * 109.47381 * 64.99928 * 12 9 8 14 14 C 1.50696 * 109.47019 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00240 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99973 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99756 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00063 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46919 * 60.00101 * 18 16 14 20 20 H 1.48501 * 109.46956 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46969 * 300.00090 * 18 16 14 22 22 C 1.52995 * 117.49622 * 79.32148 * 7 6 4 23 23 C 1.52991 * 117.50113 * 147.98499 * 7 6 4 24 24 H 1.08997 * 109.47013 * 299.99225 * 1 2 3 25 25 H 1.09000 * 109.47461 * 59.99789 * 1 2 3 26 26 H 1.09006 * 109.47158 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47131 * 240.00444 * 2 1 3 28 28 H 1.09000 * 109.47461 * 120.00211 * 2 1 3 29 29 H 1.09003 * 109.47450 * 55.20038 * 6 4 3 30 30 H 1.08995 * 109.47348 * 295.19609 * 6 4 3 31 31 H 1.00901 * 110.99970 * 62.02383 * 8 7 6 32 32 H 1.08996 * 109.47291 * 67.67600 * 11 9 8 33 33 H 1.09005 * 109.46877 * 307.68219 * 11 9 8 34 34 H 1.08997 * 109.47233 * 187.67997 * 11 9 8 35 35 H 1.08997 * 109.46724 * 185.00686 * 12 9 8 36 36 H 1.08998 * 109.46865 * 304.99628 * 12 9 8 37 37 H 1.08992 * 109.47158 * 300.00327 * 13 12 9 38 38 H 1.09008 * 109.46941 * 60.00297 * 13 12 9 39 39 H 0.97004 * 119.99786 * 180.02562 * 17 16 14 40 40 H 1.09000 * 117.50193 * 215.00064 * 22 7 6 41 41 H 1.09002 * 117.50144 * 0.02630 * 22 7 6 42 42 H 1.09006 * 117.50261 * 359.97438 * 23 7 6 43 43 H 1.08997 * 117.50031 * 144.99806 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 6 5.4440 2.8593 0.1200 8 7 5.9530 2.3342 1.3941 9 6 7.4172 2.4344 1.4573 10 1 7.7981 2.7980 0.5029 11 6 7.8143 3.4075 2.5691 12 6 8.0105 1.0550 1.7509 13 6 7.7193 0.1147 0.5796 14 6 8.3043 -1.2437 0.8686 15 1 8.8314 -1.4188 1.7947 16 6 8.1674 -2.2628 -0.0500 17 7 7.5268 -2.0492 -1.1785 18 14 8.8931 -3.9465 0.3078 19 1 8.2837 -4.4952 1.5459 20 1 8.6114 -4.8588 -0.8295 21 1 10.3616 -3.8237 0.4913 22 6 6.2364 2.5304 -1.1467 23 6 6.2640 3.9492 -0.5730 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.5179 3.4969 0.8444 30 1 3.6548 3.4410 -0.9294 31 1 5.6489 1.3833 1.5406 32 1 7.5542 2.9791 3.5370 33 1 7.2830 4.3497 2.4342 34 1 8.8886 3.5872 2.5282 35 1 9.0884 1.1444 1.8858 36 1 7.5628 0.6529 2.6596 37 1 6.6415 0.0254 0.4447 38 1 8.1672 0.5169 -0.3292 39 1 7.4302 -2.7663 -1.8246 40 1 7.1355 1.9244 -1.0348 41 1 5.6725 2.3700 -2.0657 42 1 5.7184 4.7218 -1.1148 43 1 7.1812 4.2767 -0.0836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:28 Heat of formation + Delta-G solvation = -73.990189 kcal Electronic energy + Delta-G solvation = -21766.221044 eV Core-core repulsion = 18618.997431 eV Total energy + Delta-G solvation = -3147.223614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.35516 -38.84689 -36.27091 -34.86265 -32.70745 -31.79752 -29.89768 -29.57262 -28.55685 -24.94669 -23.44492 -22.10811 -21.65789 -21.02687 -19.77134 -18.87813 -17.37144 -16.64028 -16.22658 -16.20053 -15.55061 -14.75242 -14.39107 -14.18545 -13.94827 -13.08784 -13.05734 -12.89340 -12.67148 -12.51078 -12.32459 -12.14479 -11.74570 -11.59911 -11.53001 -11.25616 -11.07067 -11.01240 -10.84115 -10.50860 -10.36382 -10.33010 -10.28373 -10.12026 -9.74732 -9.60949 -9.15069 -8.92062 -8.23833 -7.72393 -5.88870 -3.91094 2.56830 2.80846 3.37727 3.41599 3.44403 4.14062 4.48527 4.53084 4.85279 4.92291 4.96577 5.04123 5.10314 5.31486 5.35068 5.45658 5.53649 5.55108 5.67310 5.74746 5.77423 5.84145 5.86590 5.91161 5.98391 6.15027 6.26847 6.40959 6.41456 6.57612 6.60645 6.66933 6.70819 6.93245 7.19584 7.57399 7.76904 7.92393 7.98680 8.09893 8.15754 8.53570 9.15482 9.71561 11.21314 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.006768 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.405201 B = 4136.132752 C = 5759.437731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.368 6.368 4 C 0.448 3.552 5 O -0.470 6.470 6 C -0.063 4.063 7 C 0.065 3.935 8 N -0.647 5.647 9 C 0.068 3.932 10 H 0.068 0.932 11 C -0.133 4.133 12 C -0.128 4.128 13 C 0.019 3.981 14 C -0.521 4.521 15 H 0.051 0.949 16 C 0.059 3.941 17 N -0.888 5.888 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.202 4.202 23 C -0.177 4.177 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.359 0.641 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.032 0.968 38 H 0.010 0.990 39 H 0.258 0.742 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.930 11.421 1.503 15.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.286 6.286 4 C 0.288 3.712 5 O -0.354 6.354 6 C -0.102 4.102 7 C -0.028 4.028 8 N -0.281 5.281 9 C -0.042 4.042 10 H 0.086 0.914 11 C -0.192 4.192 12 C -0.167 4.167 13 C -0.018 4.018 14 C -0.559 4.559 15 H 0.069 0.931 16 C -0.142 4.142 17 N -0.527 5.527 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.242 4.242 23 C -0.214 4.214 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.182 0.818 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.029 0.971 39 H 0.068 0.932 40 H 0.134 0.866 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.889 11.556 1.710 15.970 hybrid contribution 0.693 -1.948 -0.532 2.135 sum -10.195 9.608 1.178 14.059 Atomic orbital electron populations 1.21788 0.93037 1.02748 1.03122 1.22972 0.94842 0.80501 1.03000 1.86449 1.25129 1.32220 1.84836 1.23768 0.80488 0.93133 0.73773 1.90874 1.59633 1.42457 1.42398 1.20768 0.92915 0.91199 1.05279 1.21074 0.89950 1.02754 0.88990 1.60485 1.10607 1.28584 1.28395 1.21856 0.86986 0.96818 0.98507 0.91437 1.21793 0.99437 0.98868 0.99054 1.22116 0.99597 0.93740 1.01200 1.19214 0.97923 0.92898 0.91754 1.21188 1.35299 0.96008 1.03450 0.93082 1.24994 0.95411 0.98585 0.95240 1.69981 1.41813 1.32559 1.08322 0.86740 0.79572 0.84468 0.77661 1.20372 1.21398 1.20387 1.23779 1.04934 0.97251 0.98192 1.23362 1.02041 0.92634 1.03394 0.91680 0.91742 0.90442 0.91175 0.91131 0.87137 0.87629 0.81762 0.92955 0.93141 0.93333 0.92934 0.93044 0.95013 0.97131 0.93230 0.86609 0.89413 0.88909 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 37.16 0.38 -1.00 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.37 -5.27 10.22 -39.25 -0.40 -5.67 16 4 C 0.45 7.25 7.85 36.01 0.28 7.53 16 5 O -0.47 -9.80 14.21 -18.75 -0.27 -10.07 16 6 C -0.06 -0.84 5.88 -27.88 -0.16 -1.00 16 7 C 0.07 1.03 2.06 -131.60 -0.27 0.76 16 8 N -0.65 -11.44 6.46 -93.04 -0.60 -12.04 16 9 C 0.07 1.21 1.84 -67.71 -0.12 1.08 16 10 H 0.07 1.22 4.16 -51.93 -0.22 1.01 16 11 C -0.13 -2.01 9.51 37.16 0.35 -1.65 16 12 C -0.13 -2.76 4.47 -26.73 -0.12 -2.88 16 13 C 0.02 0.50 3.97 -27.89 -0.11 0.39 16 14 C -0.52 -15.31 9.11 -34.44 -0.31 -15.62 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 18 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.20 -3.51 9.31 -26.70 -0.25 -3.76 16 23 C -0.18 -2.44 9.33 -26.70 -0.25 -2.69 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 28 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 29 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.11 1.12 8.08 -51.93 -0.42 0.70 16 31 H 0.36 7.38 5.60 -39.29 -0.22 7.16 16 32 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.03 0.91 6.70 -51.93 -0.35 0.56 16 38 H 0.01 0.30 6.70 -51.92 -0.35 -0.05 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.12 2.42 4.49 -51.93 -0.23 2.19 16 41 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.10 1.40 6.38 -51.93 -0.33 1.07 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -32.72 344.31 -7.97 -40.69 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.15 Total: 7.41 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -0.45 Total: -16.16 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.13 Total: -38.83 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.67 Total: -15.74 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.72 -7.97 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.298 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds