Wall clock time and date at job start Mon Mar 30 2020 01:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.46995 * 2 1 4 4 C 1.34228 * 116.99946 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00232 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99807 * 180.02562 * 4 3 2 7 7 C 1.53008 * 109.47217 * 175.19693 * 6 4 3 8 8 N 1.46907 * 115.54761 * 293.65902 * 7 6 4 9 9 C 1.46899 * 110.99577 * 185.98156 * 8 7 6 10 10 H 1.09001 * 109.47455 * 355.09443 * 9 8 7 11 11 C 1.53000 * 109.47274 * 115.09858 * 9 8 7 12 12 C 1.53003 * 109.46784 * 235.09843 * 9 8 7 13 13 C 1.52995 * 109.47381 * 64.99928 * 12 9 8 14 14 C 1.50696 * 109.47019 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00240 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99973 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99756 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00063 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46919 * 60.00101 * 18 16 14 20 20 H 1.48501 * 109.46956 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46969 * 300.00090 * 18 16 14 22 22 C 1.52995 * 117.49622 * 79.32148 * 7 6 4 23 23 C 1.52991 * 117.50113 * 147.98499 * 7 6 4 24 24 H 1.08997 * 109.47013 * 299.99225 * 1 2 3 25 25 H 1.09000 * 109.47461 * 59.99789 * 1 2 3 26 26 H 1.09006 * 109.47158 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47131 * 240.00444 * 2 1 3 28 28 H 1.09000 * 109.47461 * 120.00211 * 2 1 3 29 29 H 1.09003 * 109.47450 * 55.20038 * 6 4 3 30 30 H 1.08995 * 109.47348 * 295.19609 * 6 4 3 31 31 H 1.00901 * 110.99970 * 62.02383 * 8 7 6 32 32 H 1.08996 * 109.47291 * 67.67600 * 11 9 8 33 33 H 1.09005 * 109.46877 * 307.68219 * 11 9 8 34 34 H 1.08997 * 109.47233 * 187.67997 * 11 9 8 35 35 H 1.08997 * 109.46724 * 185.00686 * 12 9 8 36 36 H 1.08998 * 109.46865 * 304.99628 * 12 9 8 37 37 H 1.08992 * 109.47158 * 300.00327 * 13 12 9 38 38 H 1.09008 * 109.46941 * 60.00297 * 13 12 9 39 39 H 0.97004 * 119.99786 * 180.02562 * 17 16 14 40 40 H 1.09000 * 117.50193 * 215.00064 * 22 7 6 41 41 H 1.09002 * 117.50144 * 0.02630 * 22 7 6 42 42 H 1.09006 * 117.50261 * 359.97438 * 23 7 6 43 43 H 1.08997 * 117.50031 * 144.99806 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 6 5.4440 2.8593 0.1200 8 7 5.9530 2.3342 1.3941 9 6 7.4172 2.4344 1.4573 10 1 7.7981 2.7980 0.5029 11 6 7.8143 3.4075 2.5691 12 6 8.0105 1.0550 1.7509 13 6 7.7193 0.1147 0.5796 14 6 8.3043 -1.2437 0.8686 15 1 8.8314 -1.4188 1.7947 16 6 8.1674 -2.2628 -0.0500 17 7 7.5268 -2.0492 -1.1785 18 14 8.8931 -3.9465 0.3078 19 1 8.2837 -4.4952 1.5459 20 1 8.6114 -4.8588 -0.8295 21 1 10.3616 -3.8237 0.4913 22 6 6.2364 2.5304 -1.1467 23 6 6.2640 3.9492 -0.5730 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.5179 3.4969 0.8444 30 1 3.6548 3.4410 -0.9294 31 1 5.6489 1.3833 1.5406 32 1 7.5542 2.9791 3.5370 33 1 7.2830 4.3497 2.4342 34 1 8.8886 3.5872 2.5282 35 1 9.0884 1.1444 1.8858 36 1 7.5628 0.6529 2.6596 37 1 6.6415 0.0254 0.4447 38 1 8.1672 0.5169 -0.3292 39 1 7.4302 -2.7663 -1.8246 40 1 7.1355 1.9244 -1.0348 41 1 5.6725 2.3700 -2.0657 42 1 5.7184 4.7218 -1.1148 43 1 7.1812 4.2767 -0.0836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:28 Heat of formation + Delta-G solvation = -94.792580 kcal Electronic energy + Delta-G solvation = -21767.123104 eV Core-core repulsion = 18618.997431 eV Total energy + Delta-G solvation = -3148.125673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.63497 -40.16499 -37.58374 -36.46478 -34.79608 -32.78403 -31.65617 -30.90185 -29.84817 -26.98526 -24.47918 -23.49653 -23.16553 -22.51392 -21.27872 -20.17102 -18.61962 -18.48687 -17.87931 -17.48174 -16.81496 -16.54256 -16.10880 -15.33446 -15.29718 -14.63013 -14.51239 -14.30549 -14.15859 -13.73484 -13.48888 -13.38361 -13.30368 -13.09204 -12.86252 -12.75286 -12.51265 -12.42757 -12.40612 -12.28687 -11.80441 -11.78077 -11.63745 -11.52131 -11.48566 -11.16025 -10.99084 -10.93666 -10.53706 -9.12515 -8.18474 -6.30269 1.30573 1.33080 1.37035 1.44582 1.68778 2.37795 2.88829 3.12830 3.22168 3.65794 3.81801 3.89139 3.98692 4.03300 4.11039 4.19579 4.36096 4.40499 4.44526 4.55048 4.58416 4.75379 4.80666 4.83671 4.92251 4.92969 5.02726 5.09982 5.12150 5.14320 5.16091 5.22258 5.28204 5.47347 5.51866 5.55586 5.75283 5.89031 6.23745 6.25939 6.39380 6.84683 6.89233 7.37641 8.91408 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.006768 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.405201 B = 4136.132752 C = 5759.437731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.448 3.552 5 O -0.528 6.528 6 C -0.057 4.057 7 C 0.054 3.946 8 N -0.643 5.643 9 C 0.072 3.928 10 H 0.064 0.936 11 C -0.124 4.124 12 C -0.119 4.119 13 C 0.035 3.965 14 C -0.548 4.548 15 H 0.054 0.946 16 C 0.002 3.998 17 N -0.924 5.924 18 Si 0.961 3.039 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.265 1.265 22 C -0.233 4.233 23 C -0.137 4.137 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.339 0.661 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.004 0.996 38 H -0.018 1.018 39 H 0.259 0.741 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.683 13.111 2.320 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 O -0.277 6.277 4 C 0.291 3.709 5 O -0.416 6.416 6 C -0.095 4.095 7 C -0.039 4.039 8 N -0.273 5.273 9 C -0.038 4.038 10 H 0.082 0.918 11 C -0.181 4.181 12 C -0.157 4.157 13 C -0.002 4.002 14 C -0.586 4.586 15 H 0.072 0.928 16 C -0.197 4.197 17 N -0.564 5.564 18 Si 0.785 3.215 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.190 1.190 22 C -0.273 4.273 23 C -0.174 4.174 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.022 0.978 38 H 0.001 0.999 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.151 0.849 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.653 13.287 2.539 17.854 hybrid contribution 0.901 -2.498 -0.827 2.782 sum -10.752 10.789 1.712 15.327 Atomic orbital electron populations 1.21785 0.89585 1.04222 1.04055 1.23176 0.97500 0.79825 1.01606 1.86465 1.24191 1.32852 1.84202 1.24495 0.80600 0.93849 0.71919 1.90876 1.60892 1.44527 1.45263 1.20943 0.90747 0.89537 1.08228 1.21422 0.91731 1.03520 0.87234 1.60666 1.10117 1.27014 1.29524 1.21836 0.87210 0.95079 0.99629 0.91816 1.21705 1.00495 0.98564 0.97383 1.21970 0.99974 0.95142 0.98594 1.18964 0.95552 0.93124 0.92566 1.21683 1.35624 0.97638 1.03697 0.92813 1.25954 0.95683 1.03127 0.94894 1.70145 1.42976 1.33914 1.09353 0.85580 0.79209 0.78934 0.77781 1.19444 1.20765 1.19015 1.23565 1.04050 1.00299 0.99381 1.23457 1.01697 0.91285 1.00955 0.90673 0.90784 0.88723 0.92799 0.92505 0.84239 0.84152 0.84065 0.93051 0.91156 0.92062 0.92688 0.93578 0.97810 0.99930 0.93192 0.91119 0.89648 0.84865 0.87870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 10.29 71.98 0.74 -1.63 16 2 C 0.05 1.40 6.19 71.98 0.45 1.84 16 3 O -0.36 -10.14 10.22 -51.40 -0.53 -10.67 16 4 C 0.45 14.61 7.85 71.24 0.56 15.17 16 5 O -0.53 -23.36 14.21 21.97 0.31 -23.05 16 6 C -0.06 -1.39 5.88 29.85 0.18 -1.21 16 7 C 0.05 1.65 2.06 3.52 0.01 1.66 16 8 N -0.64 -22.72 6.46 -448.28 -2.90 -25.62 16 9 C 0.07 2.57 1.84 44.92 0.08 2.65 16 10 H 0.06 2.33 4.16 -2.39 -0.01 2.32 16 11 C -0.12 -3.45 9.51 71.98 0.68 -2.76 16 12 C -0.12 -5.27 4.47 30.59 0.14 -5.13 16 13 C 0.03 1.96 3.97 29.85 0.12 2.08 16 14 C -0.55 -33.40 9.11 25.60 0.23 -33.17 16 15 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 16 C 0.00 0.10 5.46 84.66 0.46 0.56 16 17 N -0.92 -59.71 13.29 21.45 0.28 -59.42 16 18 Si 0.96 46.95 29.54 68.60 2.03 48.97 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 C -0.23 -8.33 9.31 30.62 0.28 -8.04 16 23 C -0.14 -3.44 9.33 30.62 0.29 -3.15 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.05 1.58 8.13 -2.38 -0.02 1.56 16 28 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 29 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.14 2.46 8.08 -2.39 -0.02 2.44 16 31 H 0.34 14.53 5.60 -89.69 -0.50 14.03 16 32 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 33 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.00 0.22 6.70 -2.39 -0.02 0.21 16 38 H -0.02 -1.07 6.70 -2.38 -0.02 -1.09 16 39 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 40 H 0.07 3.19 4.49 -2.39 -0.01 3.18 16 41 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 42 H 0.13 2.32 8.14 -2.38 -0.02 2.30 16 43 H 0.10 2.59 6.38 -2.39 -0.02 2.57 16 Total: -1.00 -75.74 344.31 3.90 -71.84 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.49 Total: 29.10 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 4.22 Total: -31.15 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -2.61 Total: -85.04 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.21 Total: -33.72 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -75.74 3.90 -71.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.957 kcal (2) G-P(sol) polarization free energy of solvation -75.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds