Wall clock time and date at job start Mon Mar 30 2020 01:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45205 * 109.47253 * 2 1 4 4 C 1.34231 * 117.00230 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99913 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99721 * 180.02562 * 4 3 2 7 7 H 1.08990 * 110.27774 * 302.08585 * 6 4 3 8 8 C 1.54602 * 110.31055 * 64.28464 * 6 4 3 9 9 C 1.54936 * 102.92183 * 140.86809 * 8 6 4 10 10 N 1.48531 * 103.22841 * 322.58806 * 9 8 6 11 11 C 1.46904 * 111.00154 * 159.71726 * 10 9 8 12 12 H 1.09001 * 109.47289 * 299.44242 * 11 10 9 13 13 C 1.52993 * 109.47308 * 179.44038 * 11 10 9 14 14 C 1.53010 * 109.46689 * 59.44041 * 11 10 9 15 15 C 1.52999 * 109.46578 * 185.63796 * 14 11 10 16 16 C 1.50704 * 109.46610 * 174.82874 * 15 14 11 17 17 H 1.07998 * 120.00255 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99992 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00033 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99573 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46935 * 90.00424 * 20 18 16 22 22 H 1.48500 * 109.46815 * 209.99620 * 20 18 16 23 23 H 1.48495 * 109.47376 * 329.99982 * 20 18 16 24 24 C 1.47893 * 105.82250 * 39.20597 * 10 9 8 25 25 H 1.09001 * 109.47023 * 60.00343 * 1 2 3 26 26 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47652 * 300.00233 * 1 2 3 28 28 H 1.09000 * 109.47593 * 240.00233 * 2 1 3 29 29 H 1.09003 * 109.47194 * 120.00172 * 2 1 3 30 30 H 1.08998 * 110.72237 * 259.22826 * 8 6 4 31 31 H 1.08997 * 110.72047 * 22.33363 * 8 6 4 32 32 H 1.08994 * 110.67298 * 204.15019 * 9 8 6 33 33 H 1.09000 * 110.66825 * 81.01924 * 9 8 6 34 34 H 1.09001 * 109.47324 * 299.99804 * 13 11 10 35 35 H 1.09000 * 109.47571 * 180.02562 * 13 11 10 36 36 H 1.09000 * 109.47551 * 60.00032 * 13 11 10 37 37 H 1.09000 * 109.47196 * 305.63837 * 14 11 10 38 38 H 1.09001 * 109.46946 * 65.63892 * 14 11 10 39 39 H 1.09000 * 109.47628 * 294.82248 * 15 14 11 40 40 H 1.08995 * 109.47742 * 54.83274 * 15 14 11 41 41 H 0.97000 * 120.00224 * 180.02562 * 19 18 16 42 42 H 1.09009 * 109.92166 * 94.02557 * 24 10 9 43 43 H 1.09003 * 109.91958 * 215.11742 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5634 3.4943 -0.8650 8 6 3.5439 3.6734 1.3075 9 6 4.8357 4.4579 1.6482 10 7 5.9173 3.5193 1.2541 11 6 7.1846 4.2330 1.0478 12 1 7.0627 4.9671 0.2513 13 6 8.2752 3.2335 0.6576 14 6 7.5850 4.9456 2.3413 15 6 8.8275 5.8017 2.0882 16 6 9.1472 6.6010 3.3252 17 1 8.5265 6.5074 4.2040 18 6 10.2322 7.4518 3.3349 19 7 10.5109 8.1497 4.4141 20 14 11.3063 7.6131 1.8151 21 1 10.7783 8.6974 0.9487 22 1 12.6963 7.9386 2.2236 23 1 11.2980 6.3316 1.0648 24 6 5.4595 2.8794 0.0018 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.7110 4.3561 1.1392 31 1 3.3030 2.9605 2.0961 32 1 4.8843 4.6746 2.7153 33 1 4.8928 5.3770 1.0650 34 1 8.3972 2.4994 1.4541 35 1 9.2157 3.7630 0.5049 36 1 7.9900 2.7258 -0.2638 37 1 6.7658 5.5834 2.6732 38 1 7.8041 4.2055 3.1109 39 1 9.6709 5.1552 1.8454 40 1 8.6383 6.4799 1.2562 41 1 11.2739 8.7485 4.4209 42 1 5.8520 3.4227 -0.8579 43 1 5.7950 1.8428 -0.0297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:04 Heat of formation + Delta-G solvation = -99.025571 kcal Electronic energy + Delta-G solvation = -20878.774770 eV Core-core repulsion = 17730.465540 eV Total energy + Delta-G solvation = -3148.309229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91848 -38.97697 -36.82624 -35.13647 -32.80257 -32.04640 -30.62494 -29.58698 -28.11485 -25.59472 -24.25579 -22.72504 -21.86769 -21.07217 -19.98185 -19.39427 -18.03741 -16.93818 -16.84112 -16.66971 -15.77702 -14.83743 -14.46857 -14.34950 -14.09593 -13.88235 -13.31878 -13.13484 -12.98382 -12.88066 -12.50867 -12.29579 -12.11666 -12.06567 -11.89076 -11.56073 -11.47891 -11.20317 -11.12476 -10.93554 -10.82310 -10.72149 -10.54742 -10.40143 -9.94902 -9.64441 -9.49773 -9.10662 -8.50877 -8.21208 -6.01592 -3.98934 2.02773 2.39742 3.31736 3.39390 3.43115 4.08548 4.24542 4.42537 4.47335 4.56544 4.59761 4.66029 4.91959 4.96181 5.21175 5.27803 5.32194 5.34215 5.40919 5.43898 5.48571 5.58788 5.62934 5.68922 5.84049 5.94389 5.98176 6.02122 6.18926 6.22802 6.31966 6.50501 6.56700 6.63303 6.91096 7.10016 7.28955 7.38712 7.49625 7.56679 7.83636 8.57845 9.04173 9.61218 11.12035 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047810 B = 0.003216 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.507744 B = 8705.477584 C = 9010.991588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.473 3.527 5 O -0.501 6.501 6 C -0.094 4.094 7 H 0.111 0.889 8 C -0.108 4.108 9 C 0.034 3.966 10 N -0.510 5.510 11 C 0.070 3.930 12 H 0.039 0.961 13 C -0.142 4.142 14 C -0.094 4.094 15 C -0.013 4.013 16 C -0.517 4.517 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.879 3.121 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.041 3.959 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.018 0.982 40 H 0.007 0.993 41 H 0.262 0.738 42 H 0.052 0.948 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.977 -13.423 -11.551 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.315 3.685 5 O -0.388 6.388 6 C -0.114 4.114 7 H 0.129 0.871 8 C -0.146 4.146 9 C -0.093 4.093 10 N -0.235 5.235 11 C -0.038 4.038 12 H 0.057 0.943 13 C -0.200 4.200 14 C -0.132 4.132 15 C -0.050 4.050 16 C -0.555 4.555 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.707 3.293 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.087 4.087 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.537 -14.009 -11.075 25.739 hybrid contribution 0.540 0.665 -1.417 1.656 sum -17.997 -13.344 -12.492 25.651 Atomic orbital electron populations 1.21803 0.92599 1.02961 1.03561 1.23031 0.95369 0.80310 1.02646 1.86510 1.24587 1.32304 1.84107 1.23530 0.80405 0.92603 0.71935 1.90654 1.60234 1.42950 1.44961 1.21953 0.97122 0.90218 1.02098 0.87093 1.22480 0.98447 0.98979 0.94714 1.23267 0.89263 0.94301 1.02489 1.64915 1.02650 1.28338 1.27560 1.22046 0.88603 0.94236 0.98870 0.94330 1.21853 0.98375 0.99124 1.00638 1.21530 0.99192 0.98021 0.94418 1.19604 0.93389 0.94799 0.97247 1.21156 1.12361 1.23057 0.98958 0.91072 1.25040 0.97318 0.95313 0.95928 1.69915 1.28811 1.27618 1.28069 0.86782 0.79871 0.78874 0.83777 1.20420 1.21439 1.18981 1.22963 0.90248 1.02802 0.92679 0.91516 0.90257 0.91374 0.91307 0.91149 0.89796 0.90330 0.88947 0.93085 0.91899 0.91592 0.93744 0.92655 0.92040 0.96338 0.97424 0.92806 0.92941 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.15 0.38 -0.46 16 2 C 0.06 0.50 6.19 37.15 0.23 0.73 16 3 O -0.36 -3.74 10.22 -39.26 -0.40 -4.14 16 4 C 0.47 5.67 7.12 36.00 0.26 5.92 16 5 O -0.50 -7.40 14.99 -18.75 -0.28 -7.69 16 6 C -0.09 -1.01 3.49 -90.41 -0.32 -1.32 16 7 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 8 C -0.11 -1.12 6.60 -24.87 -0.16 -1.28 16 9 C 0.03 0.44 5.39 -1.90 -0.01 0.43 16 10 N -0.51 -7.57 5.11 -222.50 -1.14 -8.71 16 11 C 0.07 1.17 1.82 -67.71 -0.12 1.05 16 12 H 0.04 0.64 7.99 -51.93 -0.41 0.23 16 13 C -0.14 -2.27 8.92 37.15 0.33 -1.94 16 14 C -0.09 -1.88 4.59 -26.73 -0.12 -2.00 16 15 C -0.01 -0.30 3.68 -27.88 -0.10 -0.40 16 16 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 17 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 20 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 24 C 0.04 0.53 5.08 -2.76 -0.01 0.51 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 29 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16 32 H 0.09 1.25 7.53 -51.93 -0.39 0.86 16 33 H 0.05 0.65 8.00 -51.93 -0.42 0.23 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.10 6.70 -51.93 -0.35 0.75 16 36 H 0.04 0.62 7.25 -51.93 -0.38 0.24 16 37 H 0.05 1.10 6.64 -51.93 -0.34 0.76 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.02 0.44 5.90 -51.93 -0.31 0.14 16 40 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.05 0.63 7.63 -51.92 -0.40 0.24 16 43 H 0.10 1.45 6.44 -51.93 -0.33 1.11 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -32.44 339.84 -8.19 -40.64 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -7.52 Total: -2.89 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -0.08 Total: -12.17 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.36 Total: -36.13 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.68 Total: -11.83 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.44 -8.19 -40.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.387 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds