Wall clock time and date at job start Mon Mar 30 2020 01:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45205 * 109.47253 * 2 1 4 4 C 1.34231 * 117.00230 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99913 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99721 * 180.02562 * 4 3 2 7 7 H 1.08990 * 110.27774 * 302.08585 * 6 4 3 8 8 C 1.54602 * 110.31055 * 64.28464 * 6 4 3 9 9 C 1.54936 * 102.92183 * 140.86809 * 8 6 4 10 10 N 1.48531 * 103.22841 * 322.58806 * 9 8 6 11 11 C 1.46904 * 111.00154 * 159.71726 * 10 9 8 12 12 H 1.09001 * 109.47289 * 299.44242 * 11 10 9 13 13 C 1.52993 * 109.47308 * 179.44038 * 11 10 9 14 14 C 1.53010 * 109.46689 * 59.44041 * 11 10 9 15 15 C 1.52999 * 109.46578 * 185.63796 * 14 11 10 16 16 C 1.50704 * 109.46610 * 174.82874 * 15 14 11 17 17 H 1.07998 * 120.00255 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99992 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00033 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99573 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46935 * 90.00424 * 20 18 16 22 22 H 1.48500 * 109.46815 * 209.99620 * 20 18 16 23 23 H 1.48495 * 109.47376 * 329.99982 * 20 18 16 24 24 C 1.47893 * 105.82250 * 39.20597 * 10 9 8 25 25 H 1.09001 * 109.47023 * 60.00343 * 1 2 3 26 26 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47652 * 300.00233 * 1 2 3 28 28 H 1.09000 * 109.47593 * 240.00233 * 2 1 3 29 29 H 1.09003 * 109.47194 * 120.00172 * 2 1 3 30 30 H 1.08998 * 110.72237 * 259.22826 * 8 6 4 31 31 H 1.08997 * 110.72047 * 22.33363 * 8 6 4 32 32 H 1.08994 * 110.67298 * 204.15019 * 9 8 6 33 33 H 1.09000 * 110.66825 * 81.01924 * 9 8 6 34 34 H 1.09001 * 109.47324 * 299.99804 * 13 11 10 35 35 H 1.09000 * 109.47571 * 180.02562 * 13 11 10 36 36 H 1.09000 * 109.47551 * 60.00032 * 13 11 10 37 37 H 1.09000 * 109.47196 * 305.63837 * 14 11 10 38 38 H 1.09001 * 109.46946 * 65.63892 * 14 11 10 39 39 H 1.09000 * 109.47628 * 294.82248 * 15 14 11 40 40 H 1.08995 * 109.47742 * 54.83274 * 15 14 11 41 41 H 0.97000 * 120.00224 * 180.02562 * 19 18 16 42 42 H 1.09009 * 109.92166 * 94.02557 * 24 10 9 43 43 H 1.09003 * 109.91958 * 215.11742 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5634 3.4943 -0.8650 8 6 3.5439 3.6734 1.3075 9 6 4.8357 4.4579 1.6482 10 7 5.9173 3.5193 1.2541 11 6 7.1846 4.2330 1.0478 12 1 7.0627 4.9671 0.2513 13 6 8.2752 3.2335 0.6576 14 6 7.5850 4.9456 2.3413 15 6 8.8275 5.8017 2.0882 16 6 9.1472 6.6010 3.3252 17 1 8.5265 6.5074 4.2040 18 6 10.2322 7.4518 3.3349 19 7 10.5109 8.1497 4.4141 20 14 11.3063 7.6131 1.8151 21 1 10.7783 8.6974 0.9487 22 1 12.6963 7.9386 2.2236 23 1 11.2980 6.3316 1.0648 24 6 5.4595 2.8794 0.0018 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.7110 4.3561 1.1392 31 1 3.3030 2.9605 2.0961 32 1 4.8843 4.6746 2.7153 33 1 4.8928 5.3770 1.0650 34 1 8.3972 2.4994 1.4541 35 1 9.2157 3.7630 0.5049 36 1 7.9900 2.7258 -0.2638 37 1 6.7658 5.5834 2.6732 38 1 7.8041 4.2055 3.1109 39 1 9.6709 5.1552 1.8454 40 1 8.6383 6.4799 1.2562 41 1 11.2739 8.7485 4.4209 42 1 5.8520 3.4227 -0.8579 43 1 5.7950 1.8428 -0.0297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:03 Heat of formation + Delta-G solvation = -119.581897 kcal Electronic energy + Delta-G solvation = -20879.666159 eV Core-core repulsion = 17730.465540 eV Total energy + Delta-G solvation = -3149.200618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.83249 -40.04483 -37.75250 -36.56671 -34.72914 -32.83073 -32.12744 -30.61497 -29.43401 -27.20444 -25.28815 -23.72809 -22.87389 -22.52779 -21.04654 -20.75621 -18.98621 -18.88666 -17.71701 -17.67256 -16.92343 -16.18572 -16.07375 -15.58281 -15.16674 -14.87622 -14.75286 -14.42490 -14.25392 -13.90459 -13.69833 -13.45651 -13.23309 -13.08687 -12.93295 -12.80649 -12.63860 -12.42500 -12.33452 -12.21936 -12.09116 -11.82515 -11.78403 -11.53667 -11.48659 -11.39547 -11.33556 -11.07823 -10.74285 -9.33501 -8.28160 -6.31920 1.12252 1.35958 1.38558 1.50614 1.61582 2.37223 2.98443 3.07158 3.32942 3.55085 3.77014 4.00187 4.05055 4.08475 4.12055 4.20995 4.30413 4.34607 4.39126 4.47826 4.63172 4.74913 4.81439 4.83847 4.91209 4.92656 4.93130 4.96568 4.98553 5.03662 5.07779 5.15343 5.17098 5.33770 5.44778 5.52458 5.63660 5.67823 5.99134 6.11344 6.31886 6.68870 6.76297 7.32312 8.88893 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047810 B = 0.003216 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.507744 B = 8705.477584 C = 9010.991588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.356 6.356 4 C 0.475 3.525 5 O -0.536 6.536 6 C -0.089 4.089 7 H 0.143 0.857 8 C -0.098 4.098 9 C 0.030 3.970 10 N -0.527 5.527 11 C 0.080 3.920 12 H 0.047 0.953 13 C -0.140 4.140 14 C -0.085 4.085 15 C -0.007 4.007 16 C -0.531 4.531 17 H 0.028 0.972 18 C 0.001 3.999 19 N -0.953 5.953 20 Si 0.952 3.048 21 H -0.265 1.265 22 H -0.285 1.285 23 H -0.245 1.245 24 C 0.042 3.958 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.023 0.977 40 H 0.018 0.982 41 H 0.266 0.734 42 H 0.066 0.934 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.105 -13.786 -14.259 28.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.273 6.273 4 C 0.319 3.681 5 O -0.425 6.425 6 C -0.108 4.108 7 H 0.161 0.839 8 C -0.135 4.135 9 C -0.098 4.098 10 N -0.252 5.252 11 C -0.029 4.029 12 H 0.064 0.936 13 C -0.197 4.197 14 C -0.123 4.123 15 C -0.045 4.045 16 C -0.569 4.569 17 H 0.047 0.953 18 C -0.195 4.195 19 N -0.594 5.594 20 Si 0.775 3.225 21 H -0.190 1.190 22 H -0.211 1.211 23 H -0.168 1.168 24 C -0.086 4.086 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.705 -14.384 -13.786 28.022 hybrid contribution 0.804 0.742 -0.456 1.186 sum -18.901 -13.642 -14.242 27.316 Atomic orbital electron populations 1.21817 0.90297 1.04334 1.03807 1.23292 0.97161 0.79300 1.02418 1.86510 1.23652 1.33579 1.83568 1.23772 0.80687 0.92693 0.70943 1.90645 1.61049 1.44106 1.46701 1.21982 0.95529 0.89855 1.03443 0.83942 1.22437 0.97965 0.98892 0.94254 1.23310 0.89982 0.94670 1.01788 1.64816 1.02539 1.28742 1.29075 1.21821 0.89935 0.94460 0.96640 0.93551 1.21819 0.97809 0.98746 1.01342 1.21346 0.97491 0.97283 0.96131 1.19523 0.95146 0.94790 0.95011 1.21512 1.11901 1.23895 0.99570 0.95329 1.26058 0.99009 0.94813 0.99634 1.70075 1.29829 1.28744 1.30773 0.85635 0.77473 0.80025 0.79393 1.19007 1.21109 1.16796 1.22912 0.91945 1.01686 0.92054 0.91016 0.88345 0.91314 0.91244 0.91795 0.86884 0.91163 0.90360 0.92445 0.92857 0.92291 0.91610 0.93162 0.93714 0.95922 0.96398 0.92551 0.91568 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.29 71.98 0.74 -0.56 16 2 C 0.05 0.79 6.19 71.98 0.45 1.23 16 3 O -0.36 -6.78 10.22 -51.42 -0.53 -7.31 16 4 C 0.47 10.62 7.12 71.23 0.51 11.13 16 5 O -0.54 -15.48 14.99 21.98 0.33 -15.16 16 6 C -0.09 -1.66 3.49 -10.66 -0.04 -1.70 16 7 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 8 C -0.10 -1.79 6.60 31.80 0.21 -1.58 16 9 C 0.03 0.73 5.39 86.65 0.47 1.20 16 10 N -0.53 -14.99 5.11 -857.85 -4.38 -19.37 16 11 C 0.08 2.54 1.82 44.92 0.08 2.62 16 12 H 0.05 1.42 7.99 -2.39 -0.02 1.40 16 13 C -0.14 -4.23 8.92 71.98 0.64 -3.59 16 14 C -0.08 -3.39 4.59 30.60 0.14 -3.25 16 15 C -0.01 -0.33 3.68 29.85 0.11 -0.22 16 16 C -0.53 -31.25 9.66 25.60 0.25 -31.00 16 17 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16 18 C 0.00 0.07 5.47 84.66 0.46 0.53 16 19 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 20 Si 0.95 44.65 27.47 68.60 1.88 46.53 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.24 -10.58 6.54 99.48 0.65 -9.93 16 24 C 0.04 0.99 5.08 86.45 0.44 1.43 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 29 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 30 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.42 7.85 -2.39 -0.02 1.40 16 32 H 0.08 2.11 7.53 -2.39 -0.02 2.09 16 33 H 0.06 1.33 8.00 -2.39 -0.02 1.32 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.85 6.70 -2.39 -0.02 1.83 16 36 H 0.06 1.70 7.25 -2.39 -0.02 1.68 16 37 H 0.05 2.03 6.64 -2.39 -0.02 2.02 16 38 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.02 1.05 5.90 -2.39 -0.01 1.04 16 40 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 41 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.07 1.39 7.63 -2.38 -0.02 1.38 16 43 H 0.08 2.32 6.44 -2.39 -0.02 2.30 16 Total: -1.00 -71.49 339.84 2.97 -68.52 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.91 Total: 11.06 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 4.46 Total: -23.77 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -4.08 Total: -79.89 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.20 Total: -22.46 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -71.49 2.97 -68.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.059 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds