Wall clock time and date at job start Mon Mar 30 2020 01:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45208 * 109.47468 * 2 1 4 4 C 1.34225 * 117.00030 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00279 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99712 * 179.97438 * 4 3 2 7 7 H 1.09003 * 110.28645 * 299.32794 * 6 4 3 8 8 C 1.54260 * 110.32353 * 61.45458 * 6 4 3 9 9 C 1.54373 * 105.06009 * 118.89397 * 8 6 4 10 10 N 1.48557 * 104.59639 * 23.85375 * 9 8 6 11 11 C 1.46903 * 111.00104 * 200.95695 * 10 9 8 12 12 H 1.09002 * 109.46569 * 55.52045 * 11 10 9 13 13 C 1.53005 * 109.47016 * 175.51635 * 11 10 9 14 14 C 1.52992 * 109.47176 * 295.51793 * 11 10 9 15 15 C 1.53005 * 109.47121 * 174.33981 * 14 11 10 16 16 C 1.50699 * 109.47100 * 185.17586 * 15 14 11 17 17 H 1.08000 * 120.00210 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99870 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00149 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99984 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47081 * 60.00113 * 20 18 16 22 22 H 1.48498 * 109.47287 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46963 * 300.00602 * 20 18 16 24 24 C 1.48561 * 104.22226 * 320.51500 * 10 9 8 25 25 H 1.08995 * 109.47454 * 300.00716 * 1 2 3 26 26 H 1.08995 * 109.47028 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46918 * 60.00045 * 1 2 3 28 28 H 1.09003 * 109.47295 * 119.99646 * 2 1 3 29 29 H 1.08995 * 109.47747 * 239.99746 * 2 1 3 30 30 H 1.09000 * 110.32463 * 237.79258 * 8 6 4 31 31 H 1.09004 * 110.32100 * 359.89430 * 8 6 4 32 32 H 1.09005 * 110.40843 * 142.63287 * 9 8 6 33 33 H 1.09004 * 110.41310 * 264.95639 * 9 8 6 34 34 H 1.09002 * 109.47009 * 299.99926 * 13 11 10 35 35 H 1.08999 * 109.46811 * 60.00038 * 13 11 10 36 36 H 1.08998 * 109.46975 * 180.02562 * 13 11 10 37 37 H 1.09005 * 109.47327 * 294.33601 * 14 11 10 38 38 H 1.08994 * 109.47304 * 54.33342 * 14 11 10 39 39 H 1.09007 * 109.46578 * 305.17491 * 15 14 11 40 40 H 1.09000 * 109.47062 * 65.17475 * 15 14 11 41 41 H 0.96999 * 120.00106 * 179.97438 * 19 18 16 42 42 H 1.09001 * 110.41095 * 280.70684 * 24 10 9 43 43 H 1.08997 * 110.41501 * 158.26037 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.6029 3.4776 -0.8919 8 6 3.4862 3.6975 1.2700 9 6 4.8011 4.0356 2.0048 10 7 5.8375 4.0272 0.9405 11 6 7.1775 3.8384 1.5121 12 1 7.1922 2.9272 2.1101 13 6 8.2024 3.7233 0.3819 14 6 7.5274 5.0356 2.3980 15 6 8.8597 4.7755 3.1040 16 6 9.1423 5.8955 4.0719 17 1 8.4416 6.7110 4.1737 18 6 10.2949 5.8785 4.8283 19 7 11.1480 4.8853 4.7047 20 14 10.6449 7.2664 6.0286 21 1 9.5559 7.3362 7.0358 22 1 11.9380 7.0141 6.7138 23 1 10.7191 8.5526 5.2901 24 6 5.4617 2.8803 0.0742 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.9566 4.6116 1.0016 31 1 2.8547 3.0639 1.8929 32 1 4.7366 5.0217 2.4649 33 1 5.0210 3.2791 2.7581 34 1 7.9531 2.8703 -0.2492 35 1 8.1876 4.6344 -0.2161 36 1 9.1967 3.5827 0.8060 37 1 7.6114 5.9311 1.7822 38 1 6.7438 5.1785 3.1419 39 1 8.8052 3.8316 3.6464 40 1 9.6588 4.7241 2.3645 41 1 11.9590 4.8736 5.2366 42 1 5.7861 1.9419 0.5240 43 1 5.8947 2.9964 -0.9193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:05 Heat of formation + Delta-G solvation = -122.878761 kcal Electronic energy + Delta-G solvation = -20842.785058 eV Core-core repulsion = 17693.441477 eV Total energy + Delta-G solvation = -3149.343581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.87588 -40.03250 -37.77512 -36.56943 -34.76824 -32.78866 -31.87821 -30.62432 -29.28430 -27.10582 -25.39848 -23.91947 -22.96672 -22.59532 -21.05777 -20.84783 -18.77347 -18.51001 -17.92650 -17.53363 -16.96311 -16.45009 -15.93065 -15.65921 -15.24005 -14.90236 -14.51245 -14.42724 -14.20376 -13.91945 -13.63230 -13.37490 -13.27312 -12.98669 -12.86485 -12.85589 -12.61256 -12.47651 -12.40673 -12.33346 -12.25852 -11.90089 -11.82728 -11.55775 -11.49134 -11.36166 -11.24997 -11.01619 -10.52779 -9.51029 -8.19079 -6.30101 1.07120 1.39894 1.43284 1.51103 1.55826 2.41381 2.99119 3.13856 3.32093 3.56335 3.76952 3.98396 4.04693 4.06778 4.12217 4.17344 4.29601 4.33223 4.40428 4.46460 4.66296 4.74821 4.80992 4.82836 4.91758 4.92896 4.94754 4.95436 4.99581 5.06866 5.10745 5.14384 5.21744 5.36168 5.41740 5.52367 5.74631 5.86131 5.88770 6.01189 6.27855 6.64201 6.86900 7.38877 8.92630 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.038167 B = 0.003137 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.442962 B = 8922.897789 C = 9152.680014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.354 6.354 4 C 0.472 3.528 5 O -0.541 6.541 6 C -0.081 4.081 7 H 0.148 0.852 8 C -0.099 4.099 9 C 0.023 3.977 10 N -0.501 5.501 11 C 0.078 3.922 12 H 0.020 0.980 13 C -0.136 4.136 14 C -0.083 4.083 15 C 0.029 3.971 16 C -0.542 4.542 17 H 0.060 0.940 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.265 1.265 24 C 0.042 3.958 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.029 0.971 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.049 0.951 39 H -0.018 1.018 40 H -0.001 1.001 41 H 0.263 0.737 42 H 0.040 0.960 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.184 -6.127 -11.415 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.316 3.684 5 O -0.431 6.431 6 C -0.100 4.100 7 H 0.166 0.834 8 C -0.137 4.137 9 C -0.105 4.105 10 N -0.226 5.226 11 C -0.030 4.030 12 H 0.038 0.962 13 C -0.193 4.193 14 C -0.121 4.121 15 C -0.009 4.009 16 C -0.580 4.580 17 H 0.078 0.922 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.789 3.211 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.190 1.190 24 C -0.086 4.086 25 H 0.088 0.912 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.001 0.999 40 H 0.017 0.983 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.818 -6.004 -11.647 25.450 hybrid contribution 0.937 -0.748 1.317 1.781 sum -20.881 -6.752 -10.330 24.255 Atomic orbital electron populations 1.21817 0.90154 1.04358 1.03889 1.23308 0.97267 0.79267 1.02401 1.86511 1.23494 1.33584 1.83461 1.23927 0.80806 0.92711 0.70937 1.90666 1.61223 1.44298 1.46870 1.21856 0.94925 0.89138 1.04101 0.83408 1.22273 0.96403 1.01534 0.93490 1.23235 0.91569 1.01861 0.93811 1.65502 1.01287 1.39084 1.16679 1.21766 0.89249 0.96691 0.95304 0.96223 1.21778 0.97723 1.02291 0.97530 1.21413 0.97245 0.96636 0.96829 1.18996 0.92913 0.94833 0.94153 1.21674 1.05694 1.08077 1.22578 0.92201 1.25995 0.96019 0.98687 0.99233 1.70096 1.11739 1.33364 1.42272 0.85505 0.77462 0.79303 0.78813 1.19179 1.20895 1.19022 1.23087 0.92820 0.92931 0.99793 0.91247 0.88345 0.90921 0.91860 0.91249 0.86962 0.90212 0.89045 0.95271 0.91820 0.91391 0.93468 0.92472 0.93234 0.99928 0.98276 0.92818 0.94161 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 71.98 0.74 -0.60 16 2 C 0.05 0.80 6.19 71.98 0.45 1.25 16 3 O -0.35 -6.88 10.17 -51.36 -0.52 -7.40 16 4 C 0.47 10.91 7.05 71.24 0.50 11.41 16 5 O -0.54 -16.21 15.21 21.98 0.33 -15.88 16 6 C -0.08 -1.61 3.56 -10.64 -0.04 -1.65 16 7 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 8 C -0.10 -1.86 6.62 31.49 0.21 -1.66 16 9 C 0.02 0.61 5.52 86.45 0.48 1.09 16 10 N -0.50 -14.77 5.20 -856.35 -4.45 -19.23 16 11 C 0.08 2.86 1.90 44.91 0.09 2.94 16 12 H 0.02 0.79 7.98 -2.39 -0.02 0.77 16 13 C -0.14 -4.62 8.82 71.98 0.63 -3.99 16 14 C -0.08 -3.56 4.68 30.59 0.14 -3.41 16 15 C 0.03 1.55 4.61 29.85 0.14 1.69 16 16 C -0.54 -31.53 9.11 25.60 0.23 -31.29 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 18 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 19 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 20 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 C 0.04 1.07 4.66 86.45 0.40 1.48 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 29 H 0.07 1.08 8.13 -2.39 -0.02 1.07 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.42 7.68 -2.38 -0.02 1.40 16 32 H 0.09 2.39 7.56 -2.38 -0.02 2.37 16 33 H 0.03 0.86 7.91 -2.38 -0.02 0.84 16 34 H 0.06 1.88 6.94 -2.39 -0.02 1.86 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 1.81 6.70 -2.39 -0.02 1.79 16 37 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 38 H 0.05 2.07 6.80 -2.39 -0.02 2.05 16 39 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 40 H 0.00 -0.06 6.84 -2.39 -0.02 -0.08 16 41 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.04 1.24 6.76 -2.39 -0.02 1.22 16 43 H 0.10 2.33 7.67 -2.39 -0.02 2.31 16 Total: -1.00 -69.80 343.50 3.07 -66.73 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.96 Total: 8.98 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 4.44 Total: -22.39 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -4.17 Total: -76.97 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.19 Total: -23.28 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -69.80 3.07 -66.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.146 kcal (2) G-P(sol) polarization free energy of solvation -69.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds