Wall clock time and date at job start Mon Mar 30 2020 01:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45197 * 109.46881 * 2 1 4 4 C 1.34237 * 116.99638 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00086 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99778 * 180.02562 * 4 3 2 7 7 H 1.09003 * 110.72956 * 56.90186 * 6 4 3 8 8 C 1.54938 * 110.66694 * 293.80383 * 6 4 3 9 9 C 1.54591 * 102.92345 * 204.15200 * 8 6 4 10 10 C 1.53998 * 105.13856 * 21.95666 * 9 8 6 11 11 N 1.47897 * 107.05822 * 1.22501 * 10 9 8 12 12 C 1.46898 * 111.00265 * 214.15506 * 11 10 9 13 13 H 1.08997 * 109.47352 * 183.77926 * 12 11 10 14 14 C 1.52996 * 109.46982 * 63.77320 * 12 11 10 15 15 C 1.53003 * 109.46764 * 303.77621 * 12 11 10 16 16 C 1.52999 * 109.47172 * 294.72059 * 15 12 11 17 17 C 1.50706 * 109.46866 * 175.54211 * 16 15 12 18 18 H 1.07995 * 119.99843 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99539 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00390 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99831 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47072 * 269.99821 * 21 19 17 23 23 H 1.48500 * 109.47179 * 150.00020 * 21 19 17 24 24 H 1.48501 * 109.47063 * 29.99605 * 21 19 17 25 25 H 1.09003 * 109.46807 * 59.99458 * 1 2 3 26 26 H 1.08997 * 109.47068 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47027 * 299.99982 * 1 2 3 28 28 H 1.09003 * 109.47090 * 240.00693 * 2 1 3 29 29 H 1.08997 * 109.46990 * 120.00134 * 2 1 3 30 30 H 1.09004 * 110.72203 * 85.79526 * 8 6 4 31 31 H 1.08997 * 110.72472 * 322.51231 * 8 6 4 32 32 H 1.09005 * 110.31070 * 263.04284 * 9 8 6 33 33 H 1.08996 * 110.31142 * 140.87368 * 9 8 6 34 34 H 1.09001 * 109.91710 * 241.86841 * 10 9 8 35 35 H 1.09001 * 110.07752 * 120.66970 * 10 9 8 36 36 H 1.09005 * 109.47294 * 186.78576 * 14 12 11 37 37 H 1.09003 * 109.47309 * 306.78264 * 14 12 11 38 38 H 1.08998 * 109.47333 * 66.78903 * 14 12 11 39 39 H 1.09005 * 109.47191 * 174.71831 * 15 12 11 40 40 H 1.08997 * 109.47129 * 54.72418 * 15 12 11 41 41 H 1.08997 * 109.47481 * 55.54141 * 16 15 12 42 42 H 1.08999 * 109.46974 * 295.53992 * 16 15 12 43 43 H 0.97002 * 119.99930 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5542 3.5062 0.8546 8 6 3.5885 3.6671 -1.3257 9 6 4.7083 4.7281 -1.4265 10 6 5.8495 4.1936 -0.5414 11 7 5.4054 2.8907 -0.0007 12 6 5.9260 2.6789 1.3565 13 1 5.6406 1.6861 1.7043 14 6 5.3435 3.7358 2.2969 15 6 7.4515 2.7949 1.3413 16 6 8.0413 1.6569 0.5059 17 6 9.5343 1.8331 0.3999 18 1 10.0143 2.6730 0.8800 19 6 10.2870 0.9227 -0.3109 20 7 9.7024 -0.0998 -0.8960 21 14 12.1375 1.1414 -0.4430 22 1 12.4548 1.9626 -1.6389 23 1 12.7854 -0.1887 -0.5698 24 1 12.6434 1.8244 0.7748 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 2.6097 4.1436 -1.2689 31 1 3.6343 2.9768 -2.1680 32 1 4.3550 5.6880 -1.0496 33 1 5.0444 4.8267 -2.4586 34 1 6.0423 4.8887 0.2758 35 1 6.7532 4.0603 -1.1362 36 1 5.8197 3.6549 3.2741 37 1 5.5255 4.7285 1.8851 38 1 4.2702 3.5771 2.4016 39 1 7.8310 2.7313 2.3613 40 1 7.7388 3.7520 0.9060 41 1 7.6019 1.6728 -0.4915 42 1 7.8211 0.7028 0.9847 43 1 8.7415 -0.2137 -0.8272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:37 Heat of formation + Delta-G solvation = -93.903095 kcal Electronic energy + Delta-G solvation = -21790.546988 eV Core-core repulsion = 18642.459886 eV Total energy + Delta-G solvation = -3148.087102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.65049 -39.02441 -36.32361 -34.88408 -32.91217 -31.88906 -30.02724 -29.24280 -28.43146 -24.73418 -24.19035 -22.68840 -21.76335 -21.34786 -20.30003 -18.79750 -17.68175 -16.66480 -16.47042 -16.31042 -16.17749 -14.62937 -14.19686 -14.09125 -13.77066 -13.59637 -13.51278 -13.06222 -12.83016 -12.67450 -12.54921 -12.20355 -12.06456 -11.82136 -11.61845 -11.54413 -11.33902 -11.18103 -10.94674 -10.66124 -10.60028 -10.52789 -10.16979 -10.06748 -10.01315 -9.69431 -9.52738 -8.31976 -8.14512 -8.01181 -6.16873 -3.84579 2.41118 2.59743 3.51254 3.55798 3.71292 4.18866 4.55027 4.57933 4.67753 4.79598 4.84407 4.92275 4.99392 5.10368 5.15693 5.35615 5.39256 5.45197 5.54334 5.59346 5.60493 5.60768 5.70870 5.76839 5.78000 5.87277 6.01184 6.08449 6.19512 6.28035 6.34113 6.51030 6.54191 6.79081 7.08280 7.20269 7.36725 7.74900 7.91749 8.00491 8.43608 8.68637 9.09563 9.88187 11.24144 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.004812 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.438376 B = 5817.527942 C = 6400.451700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.366 6.366 4 C 0.464 3.536 5 O -0.472 6.472 6 C 0.064 3.936 7 H 0.092 0.908 8 C -0.107 4.107 9 C -0.129 4.129 10 C 0.035 3.965 11 N -0.477 5.477 12 C 0.069 3.931 13 H 0.083 0.917 14 C -0.190 4.190 15 C -0.094 4.094 16 C 0.016 3.984 17 C -0.602 4.602 18 H 0.043 0.957 19 C 0.013 3.987 20 N -0.916 5.916 21 Si 1.069 2.931 22 H -0.290 1.290 23 H -0.286 1.286 24 H -0.291 1.291 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.024 0.976 42 H 0.001 0.999 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.905 8.221 1.880 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.283 6.283 4 C 0.304 3.696 5 O -0.356 6.356 6 C -0.046 4.046 7 H 0.109 0.891 8 C -0.145 4.145 9 C -0.167 4.167 10 C -0.092 4.092 11 N -0.201 5.201 12 C -0.040 4.040 13 H 0.101 0.899 14 C -0.248 4.248 15 C -0.132 4.132 16 C -0.021 4.021 17 C -0.641 4.641 18 H 0.062 0.938 19 C -0.190 4.190 20 N -0.553 5.553 21 Si 0.898 3.102 22 H -0.217 1.217 23 H -0.211 1.211 24 H -0.217 1.217 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.019 0.981 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.104 6.773 0.929 18.419 hybrid contribution -1.616 1.090 1.300 2.344 sum -18.720 7.863 2.229 20.427 Atomic orbital electron populations 1.21789 0.92817 1.02809 1.03300 1.22975 0.95055 0.80573 1.02718 1.86467 1.24951 1.32115 1.84810 1.23437 0.80240 0.92520 0.73443 1.90743 1.59988 1.42381 1.42468 1.22423 0.91855 0.89631 1.00705 0.89058 1.22403 0.98993 0.97616 0.95499 1.22426 0.95209 0.97854 1.01258 1.22932 0.98911 0.89367 0.98032 1.64649 1.02020 1.31213 1.22255 1.22087 0.97721 0.98371 0.85778 0.89937 1.22568 1.00365 1.00592 1.01318 1.21600 0.89956 1.01247 1.00390 1.19123 0.95305 0.92263 0.95384 1.22142 0.92981 1.12579 1.36355 0.93829 1.25757 1.06315 0.93291 0.93683 1.70690 1.13232 1.29233 1.42105 0.83562 0.74976 0.75828 0.75831 1.21650 1.21148 1.21709 0.91566 0.90375 0.91643 0.91222 0.91368 0.90106 0.90341 0.91336 0.90485 0.92861 0.89025 0.91706 0.92198 0.93262 0.93112 0.92993 0.95765 0.98090 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 37.16 0.38 -0.78 16 2 C 0.06 0.69 6.19 37.16 0.23 0.92 16 3 O -0.37 -4.93 10.22 -39.28 -0.40 -5.33 16 4 C 0.46 7.51 7.18 36.01 0.26 7.77 16 5 O -0.47 -9.66 15.57 -18.75 -0.29 -9.96 16 6 C 0.06 0.91 2.61 -66.94 -0.17 0.74 16 7 H 0.09 1.15 5.57 -51.93 -0.29 0.86 16 8 C -0.11 -1.26 6.49 -24.87 -0.16 -1.42 16 9 C -0.13 -1.49 6.93 -25.37 -0.18 -1.66 16 10 C 0.03 0.53 5.04 -2.75 -0.01 0.51 16 11 N -0.48 -8.35 4.03 -216.08 -0.87 -9.22 16 12 C 0.07 1.25 2.30 -67.71 -0.16 1.10 16 13 H 0.08 1.69 7.53 -51.93 -0.39 1.30 16 14 C -0.19 -2.66 8.35 37.16 0.31 -2.35 16 15 C -0.09 -2.04 4.43 -26.73 -0.12 -2.16 16 16 C 0.02 0.45 4.23 -27.88 -0.12 0.33 16 17 C -0.60 -18.07 9.11 -34.44 -0.31 -18.38 16 18 H 0.04 1.28 7.74 -52.49 -0.41 0.87 16 19 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 20 N -0.92 -29.85 13.65 55.43 0.76 -29.09 16 21 Si 1.07 26.59 29.90 -169.99 -5.08 21.51 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.75 5.31 -51.93 -0.28 0.47 16 35 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.78 6.00 -51.93 -0.31 0.46 16 38 H 0.05 0.61 6.35 -51.93 -0.33 0.28 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 1.09 6.64 -51.93 -0.34 0.74 16 41 H 0.02 0.71 7.51 -51.93 -0.39 0.32 16 42 H 0.00 0.02 8.01 -51.93 -0.42 -0.39 16 43 H 0.27 9.03 7.22 -40.82 -0.29 8.73 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -35.02 338.70 -8.24 -43.26 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.31 Total: -1.18 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.15 Total: -15.09 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.11 Total: -38.31 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.69 Total: -15.29 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -5.08 Total: 21.51 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.02 -8.24 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.638 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds