Wall clock time and date at job start Mon Mar 30 2020 01:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45197 * 109.46881 * 2 1 4 4 C 1.34237 * 116.99638 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00086 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99778 * 180.02562 * 4 3 2 7 7 H 1.09003 * 110.72956 * 56.90186 * 6 4 3 8 8 C 1.54938 * 110.66694 * 293.80383 * 6 4 3 9 9 C 1.54591 * 102.92345 * 204.15200 * 8 6 4 10 10 C 1.53998 * 105.13856 * 21.95666 * 9 8 6 11 11 N 1.47897 * 107.05822 * 1.22501 * 10 9 8 12 12 C 1.46898 * 111.00265 * 214.15506 * 11 10 9 13 13 H 1.08997 * 109.47352 * 183.77926 * 12 11 10 14 14 C 1.52996 * 109.46982 * 63.77320 * 12 11 10 15 15 C 1.53003 * 109.46764 * 303.77621 * 12 11 10 16 16 C 1.52999 * 109.47172 * 294.72059 * 15 12 11 17 17 C 1.50706 * 109.46866 * 175.54211 * 16 15 12 18 18 H 1.07995 * 119.99843 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99539 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00390 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99831 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47072 * 269.99821 * 21 19 17 23 23 H 1.48500 * 109.47179 * 150.00020 * 21 19 17 24 24 H 1.48501 * 109.47063 * 29.99605 * 21 19 17 25 25 H 1.09003 * 109.46807 * 59.99458 * 1 2 3 26 26 H 1.08997 * 109.47068 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47027 * 299.99982 * 1 2 3 28 28 H 1.09003 * 109.47090 * 240.00693 * 2 1 3 29 29 H 1.08997 * 109.46990 * 120.00134 * 2 1 3 30 30 H 1.09004 * 110.72203 * 85.79526 * 8 6 4 31 31 H 1.08997 * 110.72472 * 322.51231 * 8 6 4 32 32 H 1.09005 * 110.31070 * 263.04284 * 9 8 6 33 33 H 1.08996 * 110.31142 * 140.87368 * 9 8 6 34 34 H 1.09001 * 109.91710 * 241.86841 * 10 9 8 35 35 H 1.09001 * 110.07752 * 120.66970 * 10 9 8 36 36 H 1.09005 * 109.47294 * 186.78576 * 14 12 11 37 37 H 1.09003 * 109.47309 * 306.78264 * 14 12 11 38 38 H 1.08998 * 109.47333 * 66.78903 * 14 12 11 39 39 H 1.09005 * 109.47191 * 174.71831 * 15 12 11 40 40 H 1.08997 * 109.47129 * 54.72418 * 15 12 11 41 41 H 1.08997 * 109.47481 * 55.54141 * 16 15 12 42 42 H 1.08999 * 109.46974 * 295.53992 * 16 15 12 43 43 H 0.97002 * 119.99930 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5542 3.5062 0.8546 8 6 3.5885 3.6671 -1.3257 9 6 4.7083 4.7281 -1.4265 10 6 5.8495 4.1936 -0.5414 11 7 5.4054 2.8907 -0.0007 12 6 5.9260 2.6789 1.3565 13 1 5.6406 1.6861 1.7043 14 6 5.3435 3.7358 2.2969 15 6 7.4515 2.7949 1.3413 16 6 8.0413 1.6569 0.5059 17 6 9.5343 1.8331 0.3999 18 1 10.0143 2.6730 0.8800 19 6 10.2870 0.9227 -0.3109 20 7 9.7024 -0.0998 -0.8960 21 14 12.1375 1.1414 -0.4430 22 1 12.4548 1.9626 -1.6389 23 1 12.7854 -0.1887 -0.5698 24 1 12.6434 1.8244 0.7748 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 2.6097 4.1436 -1.2689 31 1 3.6343 2.9768 -2.1680 32 1 4.3550 5.6880 -1.0496 33 1 5.0444 4.8267 -2.4586 34 1 6.0423 4.8887 0.2758 35 1 6.7532 4.0603 -1.1362 36 1 5.8197 3.6549 3.2741 37 1 5.5255 4.7285 1.8851 38 1 4.2702 3.5771 2.4016 39 1 7.8310 2.7313 2.3613 40 1 7.7388 3.7520 0.9060 41 1 7.6019 1.6728 -0.4915 42 1 7.8211 0.7028 0.9847 43 1 8.7415 -0.2137 -0.8272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:36 Heat of formation + Delta-G solvation = -116.647644 kcal Electronic energy + Delta-G solvation = -21791.533265 eV Core-core repulsion = 18642.459886 eV Total energy + Delta-G solvation = -3149.073380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.89004 -40.26139 -37.59671 -36.55456 -34.89090 -32.75988 -31.68473 -30.51938 -29.70764 -26.70443 -25.33327 -23.98928 -23.29973 -22.72433 -21.55486 -20.18392 -18.88360 -18.80274 -17.83192 -17.54349 -17.31634 -15.87235 -15.62771 -15.52775 -15.30737 -14.91783 -14.83601 -14.50665 -14.41045 -14.05919 -13.67627 -13.57979 -13.17347 -13.00009 -12.84868 -12.72426 -12.64104 -12.51530 -12.40361 -12.23300 -11.96317 -11.87575 -11.74342 -11.58420 -11.53554 -11.42998 -11.28689 -10.58061 -10.51391 -9.27864 -8.66885 -6.36552 1.14671 1.49387 1.50207 1.60839 1.77888 2.57833 2.97727 3.19095 3.48839 3.50252 3.82461 3.93019 3.95632 4.02195 4.06241 4.09433 4.19032 4.29051 4.30443 4.48365 4.55515 4.63492 4.72405 4.75451 4.82829 4.89529 4.90763 4.92014 5.02741 5.06702 5.10890 5.14731 5.24937 5.30776 5.40735 5.48144 5.60685 5.89663 6.03946 6.07882 6.23362 6.59708 6.77683 7.48308 8.72509 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.004812 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.438376 B = 5817.527942 C = 6400.451700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.464 3.536 5 O -0.530 6.530 6 C 0.064 3.936 7 H 0.121 0.879 8 C -0.100 4.100 9 C -0.118 4.118 10 C 0.033 3.967 11 N -0.517 5.517 12 C 0.076 3.924 13 H 0.048 0.952 14 C -0.177 4.177 15 C -0.083 4.083 16 C 0.026 3.974 17 C -0.617 4.617 18 H 0.051 0.949 19 C -0.045 4.045 20 N -0.940 5.940 21 Si 1.124 2.876 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.266 1.266 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.119 0.881 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.061 0.939 41 H -0.005 1.005 42 H -0.038 1.038 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.102 11.055 2.420 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.307 3.693 5 O -0.417 6.417 6 C -0.045 4.045 7 H 0.138 0.862 8 C -0.138 4.138 9 C -0.156 4.156 10 C -0.094 4.094 11 N -0.242 5.242 12 C -0.032 4.032 13 H 0.066 0.934 14 C -0.236 4.236 15 C -0.120 4.120 16 C -0.011 4.011 17 C -0.655 4.655 18 H 0.070 0.930 19 C -0.241 4.241 20 N -0.578 5.578 21 Si 0.944 3.056 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.191 1.191 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.013 0.987 42 H -0.020 1.020 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.355 9.641 1.477 20.786 hybrid contribution -1.308 0.132 1.121 1.728 sum -19.663 9.773 2.598 22.111 Atomic orbital electron populations 1.21795 0.89411 1.04393 1.04077 1.23272 0.97628 0.79509 1.01890 1.86472 1.23346 1.33315 1.83996 1.24008 0.80683 0.92871 0.71728 1.90732 1.61378 1.44279 1.45337 1.22613 0.89767 0.88834 1.03324 0.86165 1.22464 1.01057 0.97154 0.93144 1.22416 0.93398 0.98998 1.00777 1.22919 0.99078 0.88721 0.98704 1.64433 1.04531 1.33262 1.21974 1.21783 0.95239 0.98418 0.87792 0.93388 1.22430 1.01348 0.99573 1.00219 1.21419 0.92751 0.98846 0.99032 1.18953 0.94801 0.92832 0.94558 1.22595 0.94255 1.12669 1.35980 0.93022 1.27580 1.11495 0.92382 0.92691 1.70862 1.11910 1.30944 1.44075 0.82887 0.68742 0.76407 0.77565 1.19540 1.20954 1.19066 0.90779 0.88407 0.90776 0.92300 0.92202 0.86242 0.92178 0.87659 0.90257 0.91275 0.92785 0.91145 0.90308 0.91146 0.92909 0.92056 0.98657 1.02018 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 10.29 71.98 0.74 -1.17 16 2 C 0.05 1.15 6.19 71.98 0.45 1.60 16 3 O -0.35 -9.32 10.22 -51.48 -0.53 -9.85 16 4 C 0.46 15.27 7.18 71.24 0.51 15.78 16 5 O -0.53 -23.15 15.57 21.98 0.34 -22.81 16 6 C 0.06 1.75 2.61 44.52 0.12 1.86 16 7 H 0.12 2.60 5.57 -2.39 -0.01 2.59 16 8 C -0.10 -2.12 6.49 31.80 0.21 -1.91 16 9 C -0.12 -2.38 6.93 31.47 0.22 -2.16 16 10 C 0.03 0.96 5.04 86.45 0.44 1.39 16 11 N -0.52 -18.34 4.03 -837.55 -3.37 -21.71 16 12 C 0.08 2.82 2.30 44.92 0.10 2.93 16 13 H 0.05 2.08 7.53 -2.39 -0.02 2.07 16 14 C -0.18 -4.53 8.35 71.98 0.60 -3.93 16 15 C -0.08 -3.68 4.43 30.59 0.14 -3.54 16 16 C 0.03 1.50 4.23 29.85 0.13 1.62 16 17 C -0.62 -38.08 9.11 25.60 0.23 -37.85 16 18 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 19 C -0.05 -2.82 5.46 84.65 0.46 -2.36 16 20 N -0.94 -63.84 13.65 21.45 0.29 -63.55 16 21 Si 1.12 53.43 29.90 68.60 2.05 55.48 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 29 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 30 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.06 1.49 8.05 -2.39 -0.02 1.47 16 32 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.77 5.31 -2.39 -0.01 1.76 16 35 H 0.05 1.96 8.10 -2.39 -0.02 1.94 16 36 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.08 1.74 6.00 -2.39 -0.01 1.72 16 38 H 0.07 1.52 6.35 -2.39 -0.02 1.50 16 39 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.06 2.58 6.64 -2.39 -0.02 2.57 16 41 H 0.00 -0.31 7.51 -2.39 -0.02 -0.33 16 42 H -0.04 -2.51 8.01 -2.39 -0.02 -2.53 16 43 H 0.25 17.75 7.22 -92.71 -0.67 17.08 16 Total: -1.00 -82.04 338.70 4.19 -77.85 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 1.07 Total: 12.31 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 4.33 Total: -27.73 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -3.08 Total: -85.26 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.18 Total: -32.66 kcal Atomic # 14 Polarization: 53.43 SS G_CDS: 2.05 Total: 55.48 kcal Total: -82.04 4.19 -77.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.800 kcal (2) G-P(sol) polarization free energy of solvation -82.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds