Wall clock time and date at job start Mon Mar 30 2020 01:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45198 * 109.47048 * 2 1 4 4 C 1.34228 * 116.99859 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00094 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00272 * 180.02562 * 4 3 2 7 7 H 1.08999 * 110.36928 * 57.64238 * 6 4 3 8 8 C 1.54378 * 110.41001 * 295.17086 * 6 4 3 9 9 C 1.54259 * 105.06083 * 217.36882 * 8 6 4 10 10 C 1.54376 * 105.06169 * 359.97438 * 9 8 6 11 11 N 1.48560 * 110.41552 * 179.97438 * 6 4 3 12 12 C 1.46899 * 111.00191 * 277.82043 * 11 6 4 13 13 H 1.09000 * 109.46500 * 305.36388 * 12 11 6 14 14 C 1.52995 * 109.46978 * 65.36431 * 12 11 6 15 15 C 1.53002 * 109.46900 * 185.36901 * 12 11 6 16 16 C 1.53003 * 109.46833 * 174.43857 * 15 12 11 17 17 C 1.50698 * 109.46879 * 185.25909 * 16 15 12 18 18 H 1.08001 * 120.00420 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99770 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00156 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46974 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47263 * 119.99972 * 21 19 17 24 24 H 1.48506 * 109.47166 * 240.00392 * 21 19 17 25 25 H 1.09002 * 109.46840 * 300.00018 * 1 2 3 26 26 H 1.09006 * 109.46713 * 59.99596 * 1 2 3 27 27 H 1.09000 * 109.47255 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46763 * 240.00516 * 2 1 3 29 29 H 1.08996 * 109.46857 * 120.00275 * 2 1 3 30 30 H 1.09004 * 110.32036 * 336.26275 * 8 6 4 31 31 H 1.08998 * 110.32493 * 98.47156 * 8 6 4 32 32 H 1.08998 * 110.32953 * 118.89164 * 9 8 6 33 33 H 1.09005 * 110.32366 * 241.10426 * 9 8 6 34 34 H 1.09004 * 110.41385 * 265.07543 * 10 9 8 35 35 H 1.09003 * 110.41539 * 142.63266 * 10 9 8 36 36 H 1.09004 * 109.46754 * 179.97438 * 14 12 11 37 37 H 1.09001 * 109.47250 * 299.99621 * 14 12 11 38 38 H 1.09000 * 109.47540 * 60.00594 * 14 12 11 39 39 H 1.09003 * 109.46800 * 294.43361 * 15 12 11 40 40 H 1.08999 * 109.47352 * 54.43490 * 15 12 11 41 41 H 1.08997 * 109.46864 * 305.26132 * 16 15 12 42 42 H 1.08996 * 109.47375 * 65.25717 * 16 15 12 43 43 H 0.96997 * 119.99704 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5609 3.4965 0.8637 8 6 3.5574 3.6708 -1.3089 9 6 4.8055 4.5066 -1.6598 10 6 5.8178 4.2083 -0.5332 11 7 5.4055 2.8840 -0.0001 12 6 5.9250 2.6780 1.3584 13 1 5.5273 3.4476 2.0199 14 6 5.4966 1.2992 1.8646 15 6 7.4526 2.7621 1.3384 16 6 7.9862 2.6863 2.7704 17 6 9.4782 2.8985 2.7622 18 1 9.9943 3.0698 1.8291 19 6 10.1844 2.8739 3.9461 20 7 9.5562 2.6648 5.0824 21 14 12.0337 3.1375 3.9362 22 1 12.4959 3.3497 2.5410 23 1 12.3682 4.3299 4.7557 24 1 12.7073 1.9419 4.5038 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.3486 2.9513 -2.1006 31 1 2.6976 4.3221 -1.1517 32 1 5.2095 4.1974 -2.6238 33 1 4.5583 5.5682 -1.6749 34 1 5.7547 4.9683 0.2457 35 1 6.8299 4.1577 -0.9350 36 1 5.8825 1.1462 2.8725 37 1 4.4084 1.2393 1.8789 38 1 5.8943 0.5295 1.2031 39 1 7.8545 1.9327 0.7565 40 1 7.7586 3.7054 0.8860 41 1 7.5126 3.4590 3.3759 42 1 7.7609 1.7063 3.1907 43 1 10.0530 2.6479 5.9153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:39 Heat of formation + Delta-G solvation = -90.167900 kcal Electronic energy + Delta-G solvation = -21503.941160 eV Core-core repulsion = 18356.016028 eV Total energy + Delta-G solvation = -3147.925132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.77730 -38.76686 -36.39510 -35.04601 -32.72764 -31.93260 -30.24572 -29.60370 -28.02039 -25.06618 -24.21914 -22.75866 -21.78208 -21.05669 -20.08011 -19.24176 -17.62902 -16.89956 -16.70330 -16.22001 -15.49595 -14.65884 -14.53777 -14.34544 -13.98861 -13.80630 -13.24231 -12.97645 -12.78882 -12.74321 -12.37008 -12.23924 -11.84373 -11.80022 -11.64842 -11.47548 -11.14510 -11.08938 -10.96977 -10.82880 -10.62150 -10.50458 -10.46679 -10.06166 -9.91460 -9.58743 -9.26151 -8.96802 -8.31579 -8.27794 -5.95849 -3.97443 2.34800 2.54933 3.33680 3.40992 3.45600 4.13426 4.47901 4.50224 4.53239 4.75143 4.80115 4.86357 4.97385 5.09888 5.18590 5.38832 5.40106 5.52033 5.56555 5.57349 5.61546 5.68013 5.74657 5.74859 5.88561 6.01564 6.02900 6.14659 6.35802 6.45845 6.50568 6.70228 6.75098 6.90757 7.02900 7.21715 7.39849 7.73836 7.89800 7.94564 8.05149 8.48622 9.09952 9.66191 11.15611 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026560 B = 0.004072 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.947353 B = 6874.576330 C = 7665.266482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.365 6.365 4 C 0.465 3.535 5 O -0.472 6.472 6 C 0.069 3.931 7 H 0.085 0.915 8 C -0.108 4.108 9 C -0.124 4.124 10 C 0.035 3.965 11 N -0.487 5.487 12 C 0.071 3.929 13 H 0.038 0.962 14 C -0.133 4.133 15 C -0.099 4.099 16 C 0.023 3.977 17 C -0.516 4.516 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.032 0.968 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.012 0.988 42 H 0.020 0.980 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.190 0.505 -12.323 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.283 6.283 4 C 0.306 3.694 5 O -0.356 6.356 6 C -0.041 4.041 7 H 0.103 0.897 8 C -0.146 4.146 9 C -0.162 4.162 10 C -0.092 4.092 11 N -0.213 5.213 12 C -0.036 4.036 13 H 0.056 0.944 14 C -0.190 4.190 15 C -0.137 4.137 16 C -0.015 4.015 17 C -0.555 4.555 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.030 0.970 42 H 0.038 0.962 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.739 -0.298 -12.449 21.674 hybrid contribution 0.755 0.559 0.781 1.222 sum -16.984 0.261 -11.668 20.608 Atomic orbital electron populations 1.21796 0.92824 1.02813 1.03385 1.22971 0.95110 0.80533 1.02601 1.86479 1.24933 1.32120 1.84725 1.23302 0.80172 0.92574 0.73391 1.90722 1.59753 1.42696 1.42411 1.22194 0.91803 0.89631 1.00460 0.89740 1.22208 0.98625 0.98649 0.95127 1.22335 0.94783 0.99570 0.99508 1.23114 1.00059 0.89614 0.96428 1.65214 1.02403 1.29763 1.23949 1.22079 0.98096 0.97344 0.86109 0.94403 1.22029 0.98954 0.96674 1.01331 1.21693 0.90068 1.00729 1.01220 1.19126 0.95401 0.97258 0.89689 1.21299 0.92988 1.48340 0.92864 0.92671 1.25025 0.98356 0.95470 0.95681 1.69980 1.35545 1.50302 0.97767 0.86556 0.85843 0.77692 0.78038 1.19733 1.21090 1.21045 0.91524 0.91603 0.90381 0.91368 0.91277 0.90817 0.90217 0.90721 0.90944 0.93185 0.89043 0.92060 0.94871 0.90923 0.92533 0.93266 0.96960 0.96186 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.69 16 2 C 0.06 0.63 6.19 37.16 0.23 0.86 16 3 O -0.36 -4.58 10.22 -39.25 -0.40 -4.98 16 4 C 0.46 6.84 5.56 36.00 0.20 7.04 16 5 O -0.47 -8.31 12.51 -18.75 -0.23 -8.54 16 6 C 0.07 0.94 2.63 -67.22 -0.18 0.76 16 7 H 0.09 1.09 7.89 -51.93 -0.41 0.68 16 8 C -0.11 -1.13 6.54 -25.35 -0.17 -1.30 16 9 C -0.12 -1.27 7.00 -25.35 -0.18 -1.45 16 10 C 0.04 0.48 5.31 -2.16 -0.01 0.47 16 11 N -0.49 -7.84 4.64 -215.56 -1.00 -8.84 16 12 C 0.07 1.33 1.91 -67.71 -0.13 1.20 16 13 H 0.04 0.71 7.97 -51.93 -0.41 0.30 16 14 C -0.13 -2.54 7.37 37.15 0.27 -2.27 16 15 C -0.10 -2.15 4.58 -26.73 -0.12 -2.27 16 16 C 0.02 0.60 4.61 -27.88 -0.13 0.47 16 17 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 21 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.07 0.77 7.85 -51.93 -0.41 0.37 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.68 7.98 -51.93 -0.41 0.26 16 35 H 0.09 1.28 7.54 -51.93 -0.39 0.89 16 36 H 0.06 1.25 6.70 -51.93 -0.35 0.90 16 37 H 0.03 0.58 5.24 -51.93 -0.27 0.31 16 38 H 0.07 1.49 7.16 -51.93 -0.37 1.12 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.05 1.03 6.64 -51.93 -0.34 0.68 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.02 0.56 6.84 -51.93 -0.36 0.20 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -32.46 337.33 -8.57 -41.03 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -7.50 Total: -3.20 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -0.24 Total: -10.93 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.26 Total: -35.50 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.64 Total: -13.52 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.46 -8.57 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.139 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds