Wall clock time and date at job start Mon Mar 30 2020 01:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45198 * 109.47048 * 2 1 4 4 C 1.34228 * 116.99859 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00094 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00272 * 180.02562 * 4 3 2 7 7 H 1.08999 * 110.36928 * 57.64238 * 6 4 3 8 8 C 1.54378 * 110.41001 * 295.17086 * 6 4 3 9 9 C 1.54259 * 105.06083 * 217.36882 * 8 6 4 10 10 C 1.54376 * 105.06169 * 359.97438 * 9 8 6 11 11 N 1.48560 * 110.41552 * 179.97438 * 6 4 3 12 12 C 1.46899 * 111.00191 * 277.82043 * 11 6 4 13 13 H 1.09000 * 109.46500 * 305.36388 * 12 11 6 14 14 C 1.52995 * 109.46978 * 65.36431 * 12 11 6 15 15 C 1.53002 * 109.46900 * 185.36901 * 12 11 6 16 16 C 1.53003 * 109.46833 * 174.43857 * 15 12 11 17 17 C 1.50698 * 109.46879 * 185.25909 * 16 15 12 18 18 H 1.08001 * 120.00420 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99770 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00156 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46974 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47263 * 119.99972 * 21 19 17 24 24 H 1.48506 * 109.47166 * 240.00392 * 21 19 17 25 25 H 1.09002 * 109.46840 * 300.00018 * 1 2 3 26 26 H 1.09006 * 109.46713 * 59.99596 * 1 2 3 27 27 H 1.09000 * 109.47255 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46763 * 240.00516 * 2 1 3 29 29 H 1.08996 * 109.46857 * 120.00275 * 2 1 3 30 30 H 1.09004 * 110.32036 * 336.26275 * 8 6 4 31 31 H 1.08998 * 110.32493 * 98.47156 * 8 6 4 32 32 H 1.08998 * 110.32953 * 118.89164 * 9 8 6 33 33 H 1.09005 * 110.32366 * 241.10426 * 9 8 6 34 34 H 1.09004 * 110.41385 * 265.07543 * 10 9 8 35 35 H 1.09003 * 110.41539 * 142.63266 * 10 9 8 36 36 H 1.09004 * 109.46754 * 179.97438 * 14 12 11 37 37 H 1.09001 * 109.47250 * 299.99621 * 14 12 11 38 38 H 1.09000 * 109.47540 * 60.00594 * 14 12 11 39 39 H 1.09003 * 109.46800 * 294.43361 * 15 12 11 40 40 H 1.08999 * 109.47352 * 54.43490 * 15 12 11 41 41 H 1.08997 * 109.46864 * 305.26132 * 16 15 12 42 42 H 1.08996 * 109.47375 * 65.25717 * 16 15 12 43 43 H 0.96997 * 119.99704 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5609 3.4965 0.8637 8 6 3.5574 3.6708 -1.3089 9 6 4.8055 4.5066 -1.6598 10 6 5.8178 4.2083 -0.5332 11 7 5.4055 2.8840 -0.0001 12 6 5.9250 2.6780 1.3584 13 1 5.5273 3.4476 2.0199 14 6 5.4966 1.2992 1.8646 15 6 7.4526 2.7621 1.3384 16 6 7.9862 2.6863 2.7704 17 6 9.4782 2.8985 2.7622 18 1 9.9943 3.0698 1.8291 19 6 10.1844 2.8739 3.9461 20 7 9.5562 2.6648 5.0824 21 14 12.0337 3.1375 3.9362 22 1 12.4959 3.3497 2.5410 23 1 12.3682 4.3299 4.7557 24 1 12.7073 1.9419 4.5038 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.3486 2.9513 -2.1006 31 1 2.6976 4.3221 -1.1517 32 1 5.2095 4.1974 -2.6238 33 1 4.5583 5.5682 -1.6749 34 1 5.7547 4.9683 0.2457 35 1 6.8299 4.1577 -0.9350 36 1 5.8825 1.1462 2.8725 37 1 4.4084 1.2393 1.8789 38 1 5.8943 0.5295 1.2031 39 1 7.8545 1.9327 0.7565 40 1 7.7586 3.7054 0.8860 41 1 7.5126 3.4590 3.3759 42 1 7.7609 1.7063 3.1907 43 1 10.0530 2.6479 5.9153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:38 Heat of formation + Delta-G solvation = -110.022448 kcal Electronic energy + Delta-G solvation = -21504.802118 eV Core-core repulsion = 18356.016028 eV Total energy + Delta-G solvation = -3148.786090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.91131 -39.91532 -37.50881 -36.66707 -34.72668 -32.71442 -31.87815 -30.66924 -29.54657 -27.03809 -25.17972 -24.09161 -23.16660 -22.15966 -21.25551 -20.77040 -18.72267 -18.63257 -17.80275 -17.76043 -16.68609 -16.43869 -15.96806 -15.52954 -15.22784 -14.95978 -14.49284 -14.40316 -14.08492 -13.80405 -13.66731 -13.57788 -13.31466 -13.03485 -12.90752 -12.75081 -12.50877 -12.44977 -12.41286 -12.35528 -12.12116 -11.85009 -11.56653 -11.51758 -11.38508 -11.31087 -11.08930 -11.02574 -10.55042 -9.54467 -8.20660 -6.31564 1.21503 1.38721 1.39577 1.52990 1.55590 2.40215 2.94142 3.12301 3.50314 3.55257 3.90439 3.96493 4.00264 4.04995 4.10835 4.18799 4.26183 4.35697 4.40023 4.54250 4.69241 4.73297 4.84675 4.86421 4.90707 4.92906 4.93497 4.96409 5.04880 5.09106 5.13092 5.20207 5.26493 5.33032 5.49517 5.52411 5.73744 5.80913 5.84312 5.98711 6.25885 6.83316 6.85178 7.37375 8.91491 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026560 B = 0.004072 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.947353 B = 6874.576330 C = 7665.266482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.466 3.534 5 O -0.509 6.509 6 C 0.063 3.937 7 H 0.095 0.905 8 C -0.100 4.100 9 C -0.113 4.113 10 C 0.028 3.972 11 N -0.503 5.503 12 C 0.082 3.918 13 H 0.037 0.963 14 C -0.119 4.119 15 C -0.083 4.083 16 C 0.030 3.970 17 C -0.542 4.542 18 H 0.058 0.942 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.966 3.034 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.279 1.279 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.058 0.942 41 H -0.009 1.009 42 H -0.007 1.007 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.006 1.721 -13.820 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.397 6.397 6 C -0.047 4.047 7 H 0.113 0.887 8 C -0.138 4.138 9 C -0.151 4.151 10 C -0.099 4.099 11 N -0.229 5.229 12 C -0.026 4.026 13 H 0.055 0.945 14 C -0.177 4.177 15 C -0.121 4.121 16 C -0.007 4.007 17 C -0.580 4.580 18 H 0.076 0.924 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.790 3.210 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.205 1.205 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.009 0.991 42 H 0.011 0.989 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.586 0.930 -13.967 23.267 hybrid contribution 0.934 0.136 1.254 1.570 sum -17.652 1.066 -12.712 21.779 Atomic orbital electron populations 1.21807 0.90047 1.04313 1.03839 1.23257 0.97242 0.79385 1.02177 1.86481 1.23636 1.33499 1.84081 1.23615 0.80639 0.92669 0.72280 1.90713 1.60693 1.43865 1.44389 1.22386 0.89974 0.89520 1.02820 0.88733 1.22259 0.99711 0.98715 0.93089 1.22323 0.93434 1.01204 0.98158 1.23224 1.00787 0.88286 0.97584 1.65099 1.04486 1.31724 1.21589 1.21776 0.95930 0.96786 0.88153 0.94486 1.21875 0.99554 0.96739 0.99523 1.21427 0.92376 1.00583 0.97737 1.18981 0.94789 0.94829 0.92148 1.21709 0.94289 1.48688 0.93276 0.92353 1.25989 1.03864 0.94854 0.95149 1.70110 1.37786 1.50921 0.98538 0.85387 0.79117 0.77875 0.78601 1.18611 1.20098 1.20457 0.91369 0.90782 0.88369 0.91434 0.92215 0.90765 0.87261 0.90137 0.88209 0.93152 0.89991 0.94261 0.93536 0.92579 0.93718 0.92377 0.99093 0.98880 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 10.29 71.98 0.74 -1.00 16 2 C 0.05 1.04 6.19 71.98 0.45 1.49 16 3 O -0.36 -8.58 10.22 -51.39 -0.53 -9.10 16 4 C 0.47 13.37 5.56 71.24 0.40 13.77 16 5 O -0.51 -18.16 12.51 21.97 0.27 -17.89 16 6 C 0.06 1.61 2.63 44.32 0.12 1.72 16 7 H 0.10 2.26 7.89 -2.39 -0.02 2.24 16 8 C -0.10 -1.78 6.54 31.49 0.21 -1.57 16 9 C -0.11 -1.98 7.00 31.49 0.22 -1.76 16 10 C 0.03 0.72 5.31 86.44 0.46 1.18 16 11 N -0.50 -15.91 4.64 -835.91 -3.88 -19.79 16 12 C 0.08 3.12 1.91 44.91 0.09 3.20 16 13 H 0.04 1.41 7.97 -2.39 -0.02 1.39 16 14 C -0.12 -4.78 7.37 71.98 0.53 -4.25 16 15 C -0.08 -3.72 4.58 30.60 0.14 -3.58 16 16 C 0.03 1.66 4.61 29.85 0.14 1.80 16 17 C -0.54 -31.99 9.11 25.60 0.23 -31.76 16 18 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 19 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 20 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 21 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 1.33 8.13 -2.38 -0.02 1.31 16 29 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 30 H 0.07 1.34 7.85 -2.39 -0.02 1.33 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.05 1.29 7.98 -2.39 -0.02 1.27 16 35 H 0.08 2.24 7.54 -2.39 -0.02 2.22 16 36 H 0.04 1.69 6.70 -2.38 -0.02 1.67 16 37 H 0.05 1.70 5.24 -2.39 -0.01 1.68 16 38 H 0.06 2.41 7.16 -2.39 -0.02 2.39 16 39 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 2.46 6.64 -2.39 -0.02 2.44 16 41 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 42 H -0.01 -0.43 6.84 -2.39 -0.02 -0.44 16 43 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -71.45 337.33 3.31 -68.13 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.96 Total: 9.45 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 4.17 Total: -20.35 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -3.60 Total: -77.66 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.25 Total: -26.99 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -71.45 3.31 -68.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.888 kcal (2) G-P(sol) polarization free energy of solvation -71.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds