Wall clock time and date at job start Mon Mar 30 2020 01:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47224 * 2 1 4 4 C 1.34232 * 116.99910 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99942 * 180.27385 * 4 3 2 7 7 N 1.46894 * 109.46979 * 173.91924 * 6 4 3 8 8 C 1.46908 * 110.99675 * 161.85626 * 7 6 4 9 9 H 1.08996 * 109.47074 * 50.47544 * 8 7 6 10 10 C 1.53000 * 109.46664 * 290.46916 * 8 7 6 11 11 C 1.52999 * 109.46878 * 170.47434 * 8 7 6 12 12 C 1.53000 * 109.47048 * 174.97601 * 11 8 7 13 13 C 1.50703 * 109.47031 * 179.17640 * 12 11 8 14 14 H 1.08002 * 120.00099 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99814 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00185 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99941 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46915 * 90.00010 * 17 15 13 19 19 H 1.48502 * 109.47083 * 209.99977 * 17 15 13 20 20 H 1.48496 * 109.47037 * 329.99654 * 17 15 13 21 21 C 1.46903 * 110.99894 * 285.80252 * 7 6 4 22 22 C 1.52992 * 117.49813 * 5.20288 * 21 7 6 23 23 C 1.52998 * 117.50095 * 296.57675 * 21 7 6 24 24 H 1.08996 * 109.46997 * 59.99829 * 1 2 3 25 25 H 1.08995 * 109.47275 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47025 * 300.00347 * 1 2 3 27 27 H 1.08993 * 109.47165 * 240.00097 * 2 1 3 28 28 H 1.09007 * 109.46943 * 119.99712 * 2 1 3 29 29 H 1.08996 * 109.46941 * 293.91967 * 6 4 3 30 30 H 1.09008 * 109.46899 * 53.91955 * 6 4 3 31 31 H 1.08998 * 109.46568 * 180.02562 * 10 8 7 32 32 H 1.09000 * 109.47667 * 300.00570 * 10 8 7 33 33 H 1.09002 * 109.46934 * 60.00497 * 10 8 7 34 34 H 1.09002 * 109.47383 * 294.97856 * 11 8 7 35 35 H 1.09002 * 109.47565 * 54.97435 * 11 8 7 36 36 H 1.09003 * 109.46827 * 299.16751 * 12 11 8 37 37 H 1.08992 * 109.47175 * 59.17233 * 12 11 8 38 38 H 0.96997 * 119.99813 * 180.02562 * 16 15 13 39 39 H 1.09001 * 115.54479 * 150.90817 * 21 7 6 40 40 H 1.08999 * 117.50277 * 359.97438 * 22 21 7 41 41 H 1.09011 * 117.49983 * 145.02043 * 22 21 7 42 42 H 1.09007 * 117.49643 * 214.97376 * 23 21 7 43 43 H 1.08990 * 117.49776 * 0.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0068 7 7 5.3806 2.8627 0.1529 8 6 6.0159 4.1214 -0.2596 9 1 5.5253 4.9568 0.2398 10 6 5.8859 4.2855 -1.7752 11 6 7.4965 4.0954 0.1254 12 6 8.1858 5.3503 -0.4142 13 6 9.6396 5.3346 -0.0176 14 1 10.0325 4.5121 0.5616 15 6 10.4679 6.3708 -0.3935 16 7 9.9893 7.3726 -1.0984 17 14 12.2698 6.3517 0.0986 18 1 13.0628 5.6657 -0.9529 19 1 12.7553 7.7465 0.2539 20 1 12.4237 5.6278 1.3860 21 6 5.7546 2.5106 1.5292 22 6 4.6248 2.1711 2.5033 23 6 5.3784 3.4959 2.6376 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.6745 3.4366 -0.9302 30 1 3.5006 3.5006 0.8401 31 1 6.3577 5.2192 -2.0813 32 1 6.3765 3.4500 -2.2746 33 1 4.8311 4.3040 -2.0495 34 1 7.5892 4.0683 1.2111 35 1 7.9675 3.2101 -0.3017 36 1 8.1059 5.3698 -1.5011 37 1 7.7053 6.2359 0.0015 38 1 10.5721 8.1014 -1.3631 39 1 6.6929 1.9664 1.6366 40 1 3.6040 2.2094 2.1233 41 1 4.8196 1.4032 3.2521 42 1 6.0690 3.5995 3.4746 43 1 4.8531 4.4051 2.3456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172510237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:52 Heat of formation + Delta-G solvation = -59.264657 kcal Electronic energy + Delta-G solvation = -21288.801470 eV Core-core repulsion = 18142.216403 eV Total energy + Delta-G solvation = -3146.585067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74862 -39.02426 -36.45385 -35.25856 -33.19119 -32.10608 -31.41373 -28.56232 -27.64060 -24.99686 -23.41385 -22.60569 -21.79029 -21.60391 -20.24173 -18.58937 -17.63654 -17.40814 -16.40326 -16.23462 -16.03690 -15.07034 -14.53368 -14.32276 -14.27947 -13.98679 -13.29560 -13.04644 -12.82561 -12.54925 -12.32143 -12.04848 -11.88304 -11.82395 -11.71172 -11.55880 -11.15503 -11.13012 -10.86475 -10.66388 -10.54238 -10.51282 -10.33991 -10.14542 -10.00239 -9.63146 -9.29357 -8.99659 -8.30204 -8.10578 -5.97390 -3.98650 2.28820 2.48734 3.34070 3.40204 3.43715 3.83503 4.04107 4.48759 4.63904 4.68047 4.78394 4.81117 4.96123 4.97846 5.03015 5.12871 5.21174 5.38776 5.43908 5.50470 5.55519 5.61853 5.66114 5.69267 5.90116 5.93588 6.10361 6.21062 6.28351 6.38905 6.41092 6.63679 6.72886 6.79619 7.09605 7.21480 7.34159 7.71721 7.86712 7.87645 8.03345 8.47291 9.08341 9.65048 11.14000 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.038832 B = 0.003604 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.878815 B = 7767.231131 C = 8089.506385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.368 6.368 4 C 0.460 3.540 5 O -0.480 6.480 6 C 0.052 3.948 7 N -0.490 5.490 8 C 0.087 3.913 9 H 0.041 0.959 10 C -0.144 4.144 11 C -0.102 4.102 12 C 0.023 3.977 13 C -0.517 4.517 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.046 3.954 22 C -0.196 4.196 23 C -0.210 4.210 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.022 0.978 37 H 0.013 0.987 38 H 0.260 0.740 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.403 -10.832 3.553 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.286 6.286 4 C 0.301 3.699 5 O -0.364 6.364 6 C -0.077 4.077 7 N -0.214 5.214 8 C -0.019 4.019 9 H 0.059 0.941 10 C -0.202 4.202 11 C -0.140 4.140 12 C -0.015 4.015 13 C -0.555 4.555 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.063 4.063 22 C -0.233 4.233 23 C -0.249 4.249 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.147 0.853 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.969 -11.367 3.137 21.493 hybrid contribution 0.677 0.517 0.811 1.176 sum -17.292 -10.851 3.948 20.793 Atomic orbital electron populations 1.21801 0.92799 1.02833 1.03466 1.22958 0.95130 0.80488 1.02534 1.86492 1.25054 1.32219 1.84795 1.23623 0.80198 0.93021 0.73071 1.90668 1.60056 1.42477 1.43208 1.21701 0.90757 0.90439 1.04785 1.61826 1.04232 1.34676 1.20627 1.21848 0.97066 0.86948 0.96028 0.94111 1.21948 1.00051 1.03470 0.94716 1.21728 0.90580 1.01474 1.00229 1.19154 0.94532 0.91205 0.96567 1.21258 0.94616 1.05891 1.33772 0.92773 1.25005 0.98547 0.95599 0.95296 1.69960 1.35575 1.09974 1.38120 0.86624 0.85510 0.77101 0.78950 1.20687 1.21305 1.19935 1.22695 0.99070 1.01190 0.83306 1.23334 0.96881 0.99767 1.03360 1.23423 1.04472 0.93658 1.03351 0.91484 0.90365 0.91563 0.91309 0.91406 0.86501 0.90615 0.90398 0.91888 0.94176 0.92948 0.92455 0.95927 0.96897 0.93085 0.85337 0.89494 0.88474 0.88135 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.60 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.37 -4.34 10.22 -39.26 -0.40 -4.74 16 4 C 0.46 6.31 5.77 36.01 0.21 6.52 16 5 O -0.48 -7.96 15.41 -18.75 -0.29 -8.25 16 6 C 0.05 0.68 4.96 -4.98 -0.02 0.65 16 7 N -0.49 -7.60 4.15 -220.15 -0.91 -8.52 16 8 C 0.09 1.48 1.94 -67.71 -0.13 1.35 16 9 H 0.04 0.68 7.62 -51.93 -0.40 0.29 16 10 C -0.14 -2.36 8.73 37.16 0.32 -2.03 16 11 C -0.10 -2.09 4.17 -26.73 -0.11 -2.20 16 12 C 0.02 0.58 4.46 -27.88 -0.12 0.45 16 13 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 17 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.05 0.69 4.06 -67.72 -0.27 0.41 16 22 C -0.20 -2.49 8.68 -26.73 -0.23 -2.72 16 23 C -0.21 -2.78 8.99 -26.73 -0.24 -3.02 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 28 H 0.07 0.64 8.13 -51.92 -0.42 0.21 16 29 H 0.12 1.37 6.11 -51.93 -0.32 1.05 16 30 H 0.08 0.89 5.94 -51.92 -0.31 0.58 16 31 H 0.08 1.39 6.36 -51.93 -0.33 1.06 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.04 0.54 6.42 -51.93 -0.33 0.21 16 34 H 0.05 1.06 6.73 -51.93 -0.35 0.71 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.59 6.39 -51.93 -0.33 0.26 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.13 2.03 8.07 -51.93 -0.42 1.61 16 40 H 0.09 1.08 4.89 -51.93 -0.25 0.82 16 41 H 0.10 1.15 8.14 -51.92 -0.42 0.72 16 42 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.09 1.22 7.35 -51.93 -0.38 0.84 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -31.40 340.07 -8.36 -39.76 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.19 Total: -0.28 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -0.41 Total: -13.77 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.18 Total: -34.60 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.69 Total: -13.00 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.40 -8.36 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.502 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds