Wall clock time and date at job start Mon Mar 30 2020 01:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47224 * 2 1 4 4 C 1.34232 * 116.99910 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99942 * 180.27385 * 4 3 2 7 7 N 1.46894 * 109.46979 * 173.91924 * 6 4 3 8 8 C 1.46908 * 110.99675 * 161.85626 * 7 6 4 9 9 H 1.08996 * 109.47074 * 50.47544 * 8 7 6 10 10 C 1.53000 * 109.46664 * 290.46916 * 8 7 6 11 11 C 1.52999 * 109.46878 * 170.47434 * 8 7 6 12 12 C 1.53000 * 109.47048 * 174.97601 * 11 8 7 13 13 C 1.50703 * 109.47031 * 179.17640 * 12 11 8 14 14 H 1.08002 * 120.00099 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99814 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00185 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99941 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46915 * 90.00010 * 17 15 13 19 19 H 1.48502 * 109.47083 * 209.99977 * 17 15 13 20 20 H 1.48496 * 109.47037 * 329.99654 * 17 15 13 21 21 C 1.46903 * 110.99894 * 285.80252 * 7 6 4 22 22 C 1.52992 * 117.49813 * 5.20288 * 21 7 6 23 23 C 1.52998 * 117.50095 * 296.57675 * 21 7 6 24 24 H 1.08996 * 109.46997 * 59.99829 * 1 2 3 25 25 H 1.08995 * 109.47275 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47025 * 300.00347 * 1 2 3 27 27 H 1.08993 * 109.47165 * 240.00097 * 2 1 3 28 28 H 1.09007 * 109.46943 * 119.99712 * 2 1 3 29 29 H 1.08996 * 109.46941 * 293.91967 * 6 4 3 30 30 H 1.09008 * 109.46899 * 53.91955 * 6 4 3 31 31 H 1.08998 * 109.46568 * 180.02562 * 10 8 7 32 32 H 1.09000 * 109.47667 * 300.00570 * 10 8 7 33 33 H 1.09002 * 109.46934 * 60.00497 * 10 8 7 34 34 H 1.09002 * 109.47383 * 294.97856 * 11 8 7 35 35 H 1.09002 * 109.47565 * 54.97435 * 11 8 7 36 36 H 1.09003 * 109.46827 * 299.16751 * 12 11 8 37 37 H 1.08992 * 109.47175 * 59.17233 * 12 11 8 38 38 H 0.96997 * 119.99813 * 180.02562 * 16 15 13 39 39 H 1.09001 * 115.54479 * 150.90817 * 21 7 6 40 40 H 1.08999 * 117.50277 * 359.97438 * 22 21 7 41 41 H 1.09011 * 117.49983 * 145.02043 * 22 21 7 42 42 H 1.09007 * 117.49643 * 214.97376 * 23 21 7 43 43 H 1.08990 * 117.49776 * 0.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0068 7 7 5.3806 2.8627 0.1529 8 6 6.0159 4.1214 -0.2596 9 1 5.5253 4.9568 0.2398 10 6 5.8859 4.2855 -1.7752 11 6 7.4965 4.0954 0.1254 12 6 8.1858 5.3503 -0.4142 13 6 9.6396 5.3346 -0.0176 14 1 10.0325 4.5121 0.5616 15 6 10.4679 6.3708 -0.3935 16 7 9.9893 7.3726 -1.0984 17 14 12.2698 6.3517 0.0986 18 1 13.0628 5.6657 -0.9529 19 1 12.7553 7.7465 0.2539 20 1 12.4237 5.6278 1.3860 21 6 5.7546 2.5106 1.5292 22 6 4.6248 2.1711 2.5033 23 6 5.3784 3.4959 2.6376 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.6745 3.4366 -0.9302 30 1 3.5006 3.5006 0.8401 31 1 6.3577 5.2192 -2.0813 32 1 6.3765 3.4500 -2.2746 33 1 4.8311 4.3040 -2.0495 34 1 7.5892 4.0683 1.2111 35 1 7.9675 3.2101 -0.3017 36 1 8.1059 5.3698 -1.5011 37 1 7.7053 6.2359 0.0015 38 1 10.5721 8.1014 -1.3631 39 1 6.6929 1.9664 1.6366 40 1 3.6040 2.2094 2.1233 41 1 4.8196 1.4032 3.2521 42 1 6.0690 3.5995 3.4746 43 1 4.8531 4.4051 2.3456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172510237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:52 Heat of formation + Delta-G solvation = -77.344974 kcal Electronic energy + Delta-G solvation = -21289.585491 eV Core-core repulsion = 18142.216403 eV Total energy + Delta-G solvation = -3147.369088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.81688 -40.15478 -37.50476 -36.71450 -35.00390 -33.31402 -32.52322 -30.20931 -28.80752 -26.82630 -24.30943 -23.86151 -23.14739 -22.72139 -21.55256 -19.94922 -18.79314 -18.56765 -18.19762 -17.28005 -17.16396 -16.57275 -16.04950 -15.82263 -15.42160 -15.08020 -14.39385 -14.30797 -14.03994 -13.83524 -13.60105 -13.47640 -13.20931 -12.92400 -12.84649 -12.73669 -12.65316 -12.47400 -12.42832 -12.34170 -11.77284 -11.63538 -11.52614 -11.49091 -11.43240 -11.24374 -11.11071 -10.97262 -10.48945 -9.27826 -8.17168 -6.26385 1.23458 1.40538 1.41342 1.51971 1.54220 2.42548 2.71446 2.94236 3.16210 3.68455 3.75082 3.89094 3.92671 4.00779 4.05150 4.11718 4.18390 4.23640 4.31592 4.37445 4.50090 4.61389 4.81955 4.83228 4.87105 4.94324 4.98084 5.02229 5.06077 5.08638 5.16148 5.16931 5.26400 5.43356 5.48073 5.56149 5.82502 5.91084 5.95563 6.04956 6.32394 6.84578 6.90386 7.41873 8.94351 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.038832 B = 0.003604 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.878815 B = 7767.231131 C = 8089.506385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 O -0.365 6.365 4 C 0.466 3.534 5 O -0.514 6.514 6 C 0.050 3.950 7 N -0.500 5.500 8 C 0.098 3.902 9 H 0.047 0.953 10 C -0.140 4.140 11 C -0.086 4.086 12 C 0.030 3.970 13 C -0.541 4.541 14 H 0.054 0.946 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.959 3.041 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.266 1.266 21 C 0.020 3.980 22 C -0.177 4.177 23 C -0.203 4.203 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.005 0.995 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.586 -11.389 4.317 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.282 6.282 4 C 0.309 3.691 5 O -0.401 6.401 6 C -0.078 4.078 7 N -0.224 5.224 8 C -0.009 4.009 9 H 0.065 0.935 10 C -0.198 4.198 11 C -0.124 4.124 12 C -0.007 4.007 13 C -0.579 4.579 14 H 0.072 0.928 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.784 3.216 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.190 1.190 21 C -0.089 4.089 22 C -0.214 4.214 23 C -0.242 4.242 24 H 0.088 0.912 25 H 0.117 0.883 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.151 0.849 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.023 0.977 37 H 0.010 0.990 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.180 -11.933 3.907 22.925 hybrid contribution 0.978 0.647 0.569 1.303 sum -18.202 -11.287 4.476 21.880 Atomic orbital electron populations 1.21818 0.90314 1.04323 1.03755 1.23250 0.97041 0.79253 1.02364 1.86491 1.23803 1.33725 1.84206 1.23674 0.80598 0.92751 0.72101 1.90663 1.60936 1.43518 1.44988 1.21796 0.89075 0.90580 1.06365 1.61655 1.05978 1.33437 1.21335 1.21571 0.94723 0.88141 0.96416 0.93543 1.21874 1.01873 1.01816 0.94193 1.21449 0.92885 0.98304 0.99786 1.19012 0.93786 0.92543 0.95378 1.21700 0.96301 1.06022 1.33874 0.92813 1.25885 1.03307 0.95174 0.95178 1.70078 1.37328 1.10642 1.39068 0.85544 0.79760 0.77399 0.78935 1.19971 1.20648 1.19026 1.22668 0.99726 1.02841 0.83660 1.23340 0.96378 0.99512 1.02153 1.23436 1.04430 0.93901 1.02479 0.91244 0.88283 0.91177 0.91691 0.91497 0.84942 0.88734 0.92511 0.92920 0.90907 0.92899 0.93729 0.97701 0.98988 0.92841 0.86978 0.88846 0.87493 0.87770 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.29 71.98 0.74 -0.78 16 2 C 0.05 0.93 6.19 71.98 0.45 1.38 16 3 O -0.37 -7.90 10.22 -51.44 -0.53 -8.43 16 4 C 0.47 12.05 5.77 71.24 0.41 12.46 16 5 O -0.51 -16.65 15.41 21.96 0.34 -16.31 16 6 C 0.05 1.21 4.96 85.56 0.42 1.63 16 7 N -0.50 -15.07 4.15 -850.41 -3.53 -18.61 16 8 C 0.10 3.29 1.94 44.91 0.09 3.37 16 9 H 0.05 1.51 7.62 -2.39 -0.02 1.49 16 10 C -0.14 -4.53 8.73 71.98 0.63 -3.90 16 11 C -0.09 -3.60 4.17 30.59 0.13 -3.47 16 12 C 0.03 1.58 4.46 29.85 0.13 1.71 16 13 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 14 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 15 C 0.00 0.13 5.46 84.65 0.46 0.59 16 16 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 17 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 C 0.02 0.58 4.06 44.91 0.18 0.76 16 22 C -0.18 -4.17 8.68 30.59 0.27 -3.91 16 23 C -0.20 -5.09 8.99 30.59 0.27 -4.82 16 24 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 28 H 0.07 1.16 8.13 -2.38 -0.02 1.14 16 29 H 0.13 2.74 6.11 -2.39 -0.01 2.73 16 30 H 0.10 1.94 5.94 -2.38 -0.01 1.93 16 31 H 0.06 2.07 6.36 -2.39 -0.02 2.05 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.84 6.42 -2.39 -0.02 1.83 16 34 H 0.05 2.17 6.73 -2.39 -0.02 2.15 16 35 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.00 0.26 6.39 -2.39 -0.02 0.24 16 37 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.11 3.59 8.07 -2.39 -0.02 3.57 16 40 H 0.09 2.09 4.89 -2.39 -0.01 2.08 16 41 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 43 H 0.10 2.34 7.35 -2.39 -0.02 2.32 16 Total: -1.00 -67.65 340.07 3.98 -63.66 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.98 Total: 14.86 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 4.42 Total: -25.80 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -3.25 Total: -74.78 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.19 Total: -24.74 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -67.65 3.98 -63.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.683 kcal (2) G-P(sol) polarization free energy of solvation -67.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds