Wall clock time and date at job start Mon Mar 30 2020 01:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45195 * 109.47358 * 2 1 4 4 C 1.34227 * 117.00248 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99830 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00347 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47031 * 177.69722 * 6 4 3 8 8 C 1.46904 * 110.99784 * 199.91190 * 7 6 4 9 9 H 1.09000 * 109.46978 * 189.61266 * 8 7 6 10 10 C 1.52998 * 109.46981 * 309.61346 * 8 7 6 11 11 C 1.52995 * 109.47206 * 69.60998 * 8 7 6 12 12 C 1.53006 * 109.46748 * 62.69702 * 11 8 7 13 13 C 1.50706 * 109.47140 * 184.66799 * 12 11 8 14 14 H 1.08004 * 119.99546 * 359.97438 * 13 12 11 15 15 C 1.37868 * 120.00403 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99577 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00335 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47084 * 89.99959 * 17 15 13 19 19 H 1.48503 * 109.46989 * 209.99747 * 17 15 13 20 20 H 1.48502 * 109.46755 * 329.99989 * 17 15 13 21 21 C 1.46901 * 111.00037 * 75.96045 * 7 6 4 22 22 C 1.52995 * 117.49558 * 250.71309 * 21 7 6 23 23 C 1.52998 * 60.00284 * 252.50619 * 22 21 7 24 24 H 1.08999 * 109.47524 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46926 * 300.00102 * 1 2 3 26 26 H 1.09001 * 109.46812 * 60.00100 * 1 2 3 27 27 H 1.08999 * 109.46926 * 239.99898 * 2 1 3 28 28 H 1.09003 * 109.46587 * 120.00397 * 2 1 3 29 29 H 1.09002 * 109.47099 * 297.70017 * 6 4 3 30 30 H 1.08996 * 109.46935 * 57.69924 * 6 4 3 31 31 H 1.09000 * 109.47736 * 59.99783 * 10 8 7 32 32 H 1.09003 * 109.47128 * 180.02562 * 10 8 7 33 33 H 1.09005 * 109.47174 * 299.99319 * 10 8 7 34 34 H 1.08995 * 109.47194 * 182.68998 * 11 8 7 35 35 H 1.09001 * 109.47700 * 302.69673 * 11 8 7 36 36 H 1.09004 * 109.47064 * 304.66037 * 12 11 8 37 37 H 1.08994 * 109.47133 * 64.66834 * 12 11 8 38 38 H 0.97002 * 119.99890 * 180.02562 * 16 15 13 39 39 H 1.09003 * 115.54975 * 36.42042 * 21 7 6 40 40 H 1.08997 * 117.50373 * 359.97438 * 22 21 7 41 41 H 1.09009 * 117.49694 * 145.02031 * 22 21 7 42 42 H 1.08991 * 117.50825 * 252.51422 * 23 22 21 43 43 H 1.09003 * 117.49693 * 107.48540 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3868 2.8608 0.0564 8 6 5.9624 4.1284 0.5253 9 1 7.0446 4.1055 0.3968 10 6 5.3767 5.2856 -0.2863 11 6 5.6286 4.3234 2.0056 12 6 6.2711 3.2025 2.8252 13 6 5.8488 3.3285 4.2664 14 1 5.1886 4.1284 4.5676 15 6 6.3061 2.4234 5.2005 16 7 7.1105 1.4497 4.8336 17 14 5.7832 2.5800 6.9870 18 1 4.5378 1.8021 7.2082 19 1 6.8585 2.0533 7.8654 20 1 5.5378 4.0092 7.3073 21 6 5.9446 2.4799 -1.2481 22 6 6.5495 1.0805 -1.3763 23 6 7.4619 2.3082 -1.3447 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.6187 3.4551 -0.9104 30 1 3.5519 3.4834 0.8681 31 1 4.2945 5.3084 -0.1579 32 1 5.8042 6.2261 0.0613 33 1 5.6146 5.1467 -1.3410 34 1 6.0145 5.2859 2.3413 35 1 4.5473 4.2984 2.1407 36 1 5.9489 2.2368 2.4354 37 1 7.3562 3.2783 2.7566 38 1 7.4319 0.8126 5.4907 39 1 5.4278 2.8868 -2.1173 40 1 6.5340 0.4425 -0.4926 41 1 6.4306 0.5662 -2.3301 42 1 7.9432 2.6018 -2.2775 43 1 8.0462 2.4780 -0.4403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172510238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:54 Heat of formation + Delta-G solvation = -62.917801 kcal Electronic energy + Delta-G solvation = -21743.402545 eV Core-core repulsion = 18596.659066 eV Total energy + Delta-G solvation = -3146.743479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.21355 -38.62883 -36.12231 -35.29671 -33.06638 -31.82008 -31.08447 -29.15170 -26.88245 -25.10301 -23.19960 -22.22266 -21.73295 -21.01906 -20.40450 -18.59803 -17.60774 -16.64204 -16.42042 -16.08259 -15.28308 -15.17582 -14.47433 -14.22536 -13.92335 -13.40483 -13.02423 -12.85796 -12.77877 -12.54694 -12.44614 -12.13952 -11.82466 -11.58982 -11.51754 -11.37073 -11.19752 -11.04558 -10.85977 -10.44218 -10.35268 -10.18917 -10.10706 -9.94670 -9.79336 -9.59945 -9.19175 -8.86492 -8.21247 -7.85228 -5.85430 -3.87113 2.64853 2.81527 3.38367 3.44424 3.47201 4.09834 4.14708 4.55710 4.91806 4.94614 5.06692 5.21780 5.22923 5.29485 5.30328 5.34446 5.43488 5.49812 5.56888 5.60404 5.70406 5.74278 5.76849 5.84875 5.92955 5.98819 6.14563 6.18852 6.30250 6.40973 6.61227 6.68865 6.74981 6.83241 7.26161 7.37543 7.51818 7.86740 8.08629 8.21647 8.26812 8.58607 9.22027 9.75351 11.25437 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.006456 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.281378 B = 4336.182076 C = 5540.654619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.368 6.368 4 C 0.458 3.542 5 O -0.476 6.476 6 C 0.069 3.931 7 N -0.477 5.477 8 C 0.085 3.915 9 H 0.086 0.914 10 C -0.184 4.184 11 C -0.105 4.105 12 C 0.027 3.973 13 C -0.519 4.519 14 H 0.050 0.950 15 C 0.057 3.943 16 N -0.892 5.892 17 Si 0.885 3.115 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.004 3.996 22 C -0.146 4.146 23 C -0.177 4.177 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.009 0.991 38 H 0.258 0.742 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 1.860 -14.753 17.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.286 6.286 4 C 0.299 3.701 5 O -0.360 6.360 6 C -0.060 4.060 7 N -0.201 5.201 8 C -0.022 4.022 9 H 0.104 0.896 10 C -0.243 4.243 11 C -0.142 4.142 12 C -0.010 4.010 13 C -0.558 4.558 14 H 0.068 0.932 15 C -0.144 4.144 16 N -0.531 5.531 17 Si 0.713 3.287 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.105 4.105 22 C -0.184 4.184 23 C -0.214 4.214 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.137 0.863 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.027 0.973 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.128 0.872 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.053 1.014 -14.334 16.473 hybrid contribution -0.492 0.459 0.511 0.845 sum -8.545 1.473 -13.823 16.317 Atomic orbital electron populations 1.21790 0.93052 1.02647 1.03308 1.22915 0.94915 0.80739 1.02498 1.86461 1.25274 1.31989 1.84920 1.23686 0.80107 0.93113 0.73226 1.90658 1.59900 1.42553 1.42856 1.21524 0.89919 0.90523 1.04016 1.61420 1.02036 1.32229 1.24414 1.21955 0.99362 0.84643 0.96244 0.89575 1.22555 1.01381 1.00368 1.00009 1.21774 1.00213 1.00927 0.91333 1.19023 0.95159 0.93894 0.92887 1.21312 1.28676 1.11974 0.93828 0.93158 1.24992 0.95353 0.95526 0.98486 1.69988 1.33582 1.15702 1.33857 0.86710 0.78177 0.78120 0.85646 1.20859 1.21341 1.20019 1.22356 0.95555 1.01887 0.90655 1.22977 1.01623 0.90913 1.02863 1.23062 0.91855 1.03639 1.02854 0.90540 0.91439 0.91803 0.91677 0.91144 0.91169 0.86268 0.92666 0.92017 0.93294 0.92965 0.93466 0.94633 0.97295 0.93250 0.90344 0.87198 0.89975 0.89395 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 37.16 0.38 -1.01 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.37 -5.54 10.22 -39.25 -0.40 -5.94 16 4 C 0.46 7.79 7.83 36.01 0.28 8.07 16 5 O -0.48 -9.43 13.98 -18.75 -0.26 -9.69 16 6 C 0.07 1.06 4.11 -4.98 -0.02 1.04 16 7 N -0.48 -8.13 3.42 -220.15 -0.75 -8.88 16 8 C 0.08 1.41 2.25 -67.71 -0.15 1.26 16 9 H 0.09 1.48 6.62 -51.93 -0.34 1.14 16 10 C -0.18 -2.39 8.50 37.16 0.32 -2.07 16 11 C -0.10 -2.12 4.59 -26.73 -0.12 -2.24 16 12 C 0.03 0.72 4.90 -27.88 -0.14 0.59 16 13 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 14 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 17 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 18 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.00 0.06 3.94 -67.71 -0.27 -0.21 16 22 C -0.15 -2.27 9.20 -26.73 -0.25 -2.52 16 23 C -0.18 -2.53 9.61 -26.73 -0.26 -2.78 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 29 H 0.07 0.88 7.19 -51.93 -0.37 0.50 16 30 H 0.12 1.85 5.91 -51.93 -0.31 1.54 16 31 H 0.05 0.67 6.65 -51.93 -0.35 0.32 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.93 6.33 -51.93 -0.33 0.61 16 36 H 0.04 1.03 7.55 -51.93 -0.39 0.64 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.08 1.04 7.91 -51.93 -0.41 0.63 16 40 H 0.11 2.09 7.64 -51.93 -0.40 1.69 16 41 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.10 1.65 7.42 -51.93 -0.39 1.27 16 LS Contribution 346.08 15.07 5.22 5.22 Total: -1.00 -32.92 346.08 -8.34 -41.25 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.45 Total: 0.48 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -0.40 Total: -12.62 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: -0.02 Total: -35.98 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.66 Total: -15.62 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.92 -8.34 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.664 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds