Wall clock time and date at job start Mon Mar 30 2020 01:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45195 * 109.47358 * 2 1 4 4 C 1.34227 * 117.00248 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99830 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00347 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47031 * 177.69722 * 6 4 3 8 8 C 1.46904 * 110.99784 * 199.91190 * 7 6 4 9 9 H 1.09000 * 109.46978 * 189.61266 * 8 7 6 10 10 C 1.52998 * 109.46981 * 309.61346 * 8 7 6 11 11 C 1.52995 * 109.47206 * 69.60998 * 8 7 6 12 12 C 1.53006 * 109.46748 * 62.69702 * 11 8 7 13 13 C 1.50706 * 109.47140 * 184.66799 * 12 11 8 14 14 H 1.08004 * 119.99546 * 359.97438 * 13 12 11 15 15 C 1.37868 * 120.00403 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99577 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00335 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47084 * 89.99959 * 17 15 13 19 19 H 1.48503 * 109.46989 * 209.99747 * 17 15 13 20 20 H 1.48502 * 109.46755 * 329.99989 * 17 15 13 21 21 C 1.46901 * 111.00037 * 75.96045 * 7 6 4 22 22 C 1.52995 * 117.49558 * 250.71309 * 21 7 6 23 23 C 1.52998 * 60.00284 * 252.50619 * 22 21 7 24 24 H 1.08999 * 109.47524 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46926 * 300.00102 * 1 2 3 26 26 H 1.09001 * 109.46812 * 60.00100 * 1 2 3 27 27 H 1.08999 * 109.46926 * 239.99898 * 2 1 3 28 28 H 1.09003 * 109.46587 * 120.00397 * 2 1 3 29 29 H 1.09002 * 109.47099 * 297.70017 * 6 4 3 30 30 H 1.08996 * 109.46935 * 57.69924 * 6 4 3 31 31 H 1.09000 * 109.47736 * 59.99783 * 10 8 7 32 32 H 1.09003 * 109.47128 * 180.02562 * 10 8 7 33 33 H 1.09005 * 109.47174 * 299.99319 * 10 8 7 34 34 H 1.08995 * 109.47194 * 182.68998 * 11 8 7 35 35 H 1.09001 * 109.47700 * 302.69673 * 11 8 7 36 36 H 1.09004 * 109.47064 * 304.66037 * 12 11 8 37 37 H 1.08994 * 109.47133 * 64.66834 * 12 11 8 38 38 H 0.97002 * 119.99890 * 180.02562 * 16 15 13 39 39 H 1.09003 * 115.54975 * 36.42042 * 21 7 6 40 40 H 1.08997 * 117.50373 * 359.97438 * 22 21 7 41 41 H 1.09009 * 117.49694 * 145.02031 * 22 21 7 42 42 H 1.08991 * 117.50825 * 252.51422 * 23 22 21 43 43 H 1.09003 * 117.49693 * 107.48540 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3868 2.8608 0.0564 8 6 5.9624 4.1284 0.5253 9 1 7.0446 4.1055 0.3968 10 6 5.3767 5.2856 -0.2863 11 6 5.6286 4.3234 2.0056 12 6 6.2711 3.2025 2.8252 13 6 5.8488 3.3285 4.2664 14 1 5.1886 4.1284 4.5676 15 6 6.3061 2.4234 5.2005 16 7 7.1105 1.4497 4.8336 17 14 5.7832 2.5800 6.9870 18 1 4.5378 1.8021 7.2082 19 1 6.8585 2.0533 7.8654 20 1 5.5378 4.0092 7.3073 21 6 5.9446 2.4799 -1.2481 22 6 6.5495 1.0805 -1.3763 23 6 7.4619 2.3082 -1.3447 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.6187 3.4551 -0.9104 30 1 3.5519 3.4834 0.8681 31 1 4.2945 5.3084 -0.1579 32 1 5.8042 6.2261 0.0613 33 1 5.6146 5.1467 -1.3410 34 1 6.0145 5.2859 2.3413 35 1 4.5473 4.2984 2.1407 36 1 5.9489 2.2368 2.4354 37 1 7.3562 3.2783 2.7566 38 1 7.4319 0.8126 5.4907 39 1 5.4278 2.8868 -2.1173 40 1 6.5340 0.4425 -0.4926 41 1 6.4306 0.5662 -2.3301 42 1 7.9432 2.6018 -2.2775 43 1 8.0462 2.4780 -0.4403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172510238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:54 Heat of formation + Delta-G solvation = -82.582365 kcal Electronic energy + Delta-G solvation = -21744.255264 eV Core-core repulsion = 18596.659066 eV Total energy + Delta-G solvation = -3147.596198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.49448 -39.88493 -37.41912 -36.67334 -35.10202 -33.08073 -32.44478 -30.73216 -28.07332 -27.02704 -24.20810 -23.63603 -23.17091 -22.30723 -21.95166 -19.93732 -18.88124 -18.33932 -17.90159 -17.61478 -16.52325 -16.46952 -16.38561 -15.54575 -15.08126 -14.71656 -14.51775 -14.38225 -13.98709 -13.71094 -13.59604 -13.52654 -13.31649 -13.11086 -12.84663 -12.76228 -12.48385 -12.47541 -12.36829 -12.29792 -11.79234 -11.50488 -11.46981 -11.34079 -11.25333 -11.17198 -11.09115 -10.80605 -10.49513 -9.07250 -8.13984 -6.24863 1.33810 1.37390 1.39377 1.50135 1.66023 2.42187 2.89090 2.96400 3.18556 3.83233 3.97158 4.01762 4.08683 4.11389 4.13734 4.20540 4.24376 4.35671 4.39408 4.43306 4.55353 4.73347 4.78966 4.82957 4.87220 4.93789 4.95749 5.05040 5.14590 5.16246 5.17726 5.31471 5.42640 5.46559 5.54509 5.58821 5.87691 6.03015 6.15124 6.30098 6.33347 6.93702 6.96704 7.43496 8.97380 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.006456 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.281378 B = 4336.182076 C = 5540.654619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.454 3.546 5 O -0.514 6.514 6 C 0.071 3.929 7 N -0.513 5.513 8 C 0.093 3.907 9 H 0.073 0.927 10 C -0.173 4.173 11 C -0.095 4.095 12 C 0.038 3.962 13 C -0.539 4.539 14 H 0.059 0.941 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.960 3.040 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.259 1.259 21 C 0.010 3.990 22 C -0.158 4.158 23 C -0.165 4.165 24 H 0.098 0.902 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.053 0.947 36 H -0.002 1.002 37 H -0.025 1.025 38 H 0.259 0.741 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.123 0.877 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.277 3.711 -15.830 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.019 4.019 3 O -0.284 6.284 4 C 0.297 3.703 5 O -0.401 6.401 6 C -0.058 4.058 7 N -0.238 5.238 8 C -0.014 4.014 9 H 0.091 0.909 10 C -0.231 4.231 11 C -0.132 4.132 12 C 0.001 3.999 13 C -0.577 4.577 14 H 0.077 0.923 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.784 3.216 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.183 1.183 21 C -0.098 4.098 22 C -0.196 4.196 23 C -0.203 4.203 24 H 0.117 0.883 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.016 0.984 37 H -0.006 1.006 38 H 0.068 0.932 39 H 0.128 0.872 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.141 0.859 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.862 2.892 -15.417 18.528 hybrid contribution 0.065 -0.200 0.859 0.885 sum -9.797 2.692 -14.558 17.753 Atomic orbital electron populations 1.21800 0.90011 1.04300 1.03787 1.23191 0.97262 0.79620 1.01842 1.86466 1.24203 1.33343 1.84359 1.24180 0.80478 0.93531 0.72136 1.90656 1.60825 1.43872 1.44768 1.21609 0.88890 0.89626 1.05647 1.61212 1.03319 1.32953 1.26285 1.21726 0.98979 0.86368 0.94313 0.90876 1.22423 1.01904 0.98531 1.00264 1.21599 0.99851 0.98500 0.93277 1.18812 0.93321 0.94588 0.93151 1.21815 1.28576 1.12096 0.95226 0.92284 1.25988 0.95277 0.95057 1.03790 1.70154 1.35019 1.16739 1.35621 0.85535 0.77808 0.78924 0.79307 1.20167 1.20915 1.18296 1.22490 0.95854 1.00839 0.90643 1.22849 1.03653 0.91186 1.01949 1.23053 0.91623 1.02388 1.03190 0.88313 0.91659 0.90537 0.91214 0.93075 0.87257 0.86557 0.91366 0.91144 0.91308 0.92173 0.92843 0.98372 1.00637 0.93215 0.87216 0.91818 0.87711 0.85893 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 10.29 71.98 0.74 -1.63 16 2 C 0.05 1.36 6.19 71.98 0.45 1.81 16 3 O -0.37 -10.80 10.22 -51.39 -0.53 -11.33 16 4 C 0.45 15.49 7.83 71.24 0.56 16.05 16 5 O -0.51 -21.23 13.98 21.97 0.31 -20.92 16 6 C 0.07 2.07 4.11 85.56 0.35 2.42 16 7 N -0.51 -17.37 3.42 -850.42 -2.91 -20.28 16 8 C 0.09 3.01 2.25 44.91 0.10 3.11 16 9 H 0.07 2.54 6.62 -2.39 -0.02 2.52 16 10 C -0.17 -3.87 8.50 71.98 0.61 -3.26 16 11 C -0.09 -3.83 4.59 30.59 0.14 -3.69 16 12 C 0.04 2.12 4.90 29.85 0.15 2.27 16 13 C -0.54 -31.90 9.11 25.60 0.23 -31.67 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 15 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 16 N -0.93 -60.52 13.29 21.44 0.28 -60.24 16 17 Si 0.96 46.25 29.54 68.60 2.03 48.28 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 21 C 0.01 0.28 3.94 44.91 0.18 0.46 16 22 C -0.16 -5.03 9.20 30.59 0.28 -4.75 16 23 C -0.17 -4.64 9.61 30.59 0.29 -4.35 16 24 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 28 H 0.05 1.46 8.13 -2.39 -0.02 1.44 16 29 H 0.11 2.33 7.19 -2.39 -0.02 2.31 16 30 H 0.12 3.46 5.91 -2.39 -0.01 3.45 16 31 H 0.07 1.37 6.65 -2.39 -0.02 1.36 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.31 7.65 -2.38 -0.02 1.29 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 35 H 0.05 2.08 6.33 -2.39 -0.02 2.07 16 36 H 0.00 -0.13 7.55 -2.38 -0.02 -0.15 16 37 H -0.02 -1.51 8.14 -2.39 -0.02 -1.53 16 38 H 0.26 15.83 8.31 -92.71 -0.77 15.05 16 39 H 0.11 2.50 7.91 -2.39 -0.02 2.48 16 40 H 0.06 2.62 7.64 -2.39 -0.02 2.60 16 41 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 42 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.07 2.52 7.42 -2.39 -0.02 2.50 16 Total: -1.00 -75.34 346.08 4.69 -70.65 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.96 Total: 16.85 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 4.54 Total: -23.01 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -2.62 Total: -80.51 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.22 Total: -32.25 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -75.34 4.69 -70.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.932 kcal (2) G-P(sol) polarization free energy of solvation -75.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds