Wall clock time and date at job start Mon Mar 30 2020 01:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.47104 * 2 1 4 4 C 1.46902 * 110.99880 * 76.16344 * 3 2 1 5 5 C 1.50702 * 109.46814 * 282.49790 * 4 3 2 6 6 H 1.07999 * 120.00398 * 354.67679 * 5 4 3 7 7 C 1.37883 * 119.99660 * 174.67604 * 5 4 3 8 8 N 1.31515 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99702 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47298 * 60.00252 * 9 7 5 11 11 H 1.48504 * 109.47175 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47304 * 300.00080 * 9 7 5 13 13 C 1.46896 * 110.99920 * 200.11436 * 3 2 1 14 14 H 1.08997 * 109.47202 * 189.64615 * 13 3 2 15 15 C 1.53006 * 109.47250 * 309.64581 * 13 3 2 16 16 C 1.52993 * 109.47280 * 179.97438 * 15 13 3 17 17 C 1.52998 * 109.47644 * 300.00422 * 16 15 13 18 18 C 1.53006 * 109.47127 * 59.99484 * 17 16 15 19 19 H 1.08997 * 109.46990 * 60.00484 * 18 17 16 20 20 C 1.50698 * 109.47040 * 180.02562 * 18 17 16 21 21 O 1.20833 * 119.99875 * 119.99969 * 20 18 17 22 22 O 1.34231 * 120.00486 * 300.00225 * 20 18 17 23 23 C 1.45198 * 117.00445 * 179.97438 * 22 20 18 24 24 C 1.52995 * 109.47067 * 300.00228 * 18 17 16 25 25 H 1.08999 * 109.46736 * 52.15162 * 1 2 3 26 26 H 1.08997 * 109.47240 * 292.14707 * 1 2 3 27 27 H 1.09001 * 109.46974 * 172.14415 * 1 2 3 28 28 H 1.09002 * 109.46603 * 119.99816 * 2 1 3 29 29 H 1.08999 * 109.47219 * 239.99505 * 2 1 3 30 30 H 1.09000 * 109.47485 * 42.49520 * 4 3 2 31 31 H 1.09000 * 109.46952 * 162.49969 * 4 3 2 32 32 H 0.97004 * 119.99503 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46982 * 300.00051 * 15 13 3 34 34 H 1.09003 * 109.46694 * 60.00223 * 15 13 3 35 35 H 1.08998 * 109.47633 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.46846 * 59.99852 * 16 15 13 37 37 H 1.08997 * 109.46790 * 299.99845 * 17 16 15 38 38 H 1.09000 * 109.47641 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.46845 * 59.99686 * 23 22 20 40 40 H 1.08993 * 109.47399 * 180.02562 * 23 22 20 41 41 H 1.09005 * 109.46900 * 300.00452 * 23 22 20 42 42 H 1.08997 * 109.47424 * 299.99990 * 24 18 17 43 43 H 1.09006 * 109.47179 * 179.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8859 1.9906 1.3317 5 6 0.4498 2.3848 1.5622 6 1 -0.2727 2.2832 0.7659 7 6 0.0581 2.8752 2.7899 8 7 0.9379 2.9994 3.7595 9 14 -1.7222 3.3632 3.0759 10 1 -2.5989 2.1834 2.8646 11 1 -1.8828 3.8569 4.4672 12 1 -2.1002 4.4377 2.1232 13 6 3.4093 1.4520 -0.4716 14 1 3.8027 2.4542 -0.3017 15 6 4.2575 0.4346 0.2942 16 6 5.7046 0.5040 -0.1974 17 6 5.7512 0.1842 -1.6929 18 6 4.9030 1.2016 -2.4587 19 1 5.2966 2.2037 -2.2891 20 6 4.9484 0.8862 -3.9316 21 8 3.9280 0.6321 -4.5268 22 8 6.1224 0.8873 -4.5824 23 6 6.0907 0.5740 -5.9999 24 6 3.4558 1.1321 -1.9671 25 1 -0.3633 0.6306 -0.8115 26 1 -0.3633 0.3874 0.9518 27 1 -0.3633 -1.0180 -0.1405 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 2.1913 1.2705 2.0907 31 1 2.5200 2.8751 1.3939 32 1 0.6622 3.3441 4.6233 33 1 4.2240 0.6623 1.3597 34 1 3.8641 -0.5676 0.1242 35 1 6.3088 -0.2211 0.3478 36 1 6.0982 1.5063 -0.0279 37 1 5.3576 -0.8180 -1.8624 38 1 6.7822 0.2341 -2.0432 39 1 5.4673 1.3020 -6.5190 40 1 7.1029 0.6091 -6.4025 41 1 5.6779 -0.4248 -6.1420 42 1 3.0622 0.1299 -2.1367 43 1 2.8516 1.8572 -2.5124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172615787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:27 Heat of formation + Delta-G solvation = -100.078003 kcal Electronic energy + Delta-G solvation = -21723.856465 eV Core-core repulsion = 18575.501599 eV Total energy + Delta-G solvation = -3148.354866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74771 -38.85707 -36.57217 -35.62642 -32.52133 -31.13914 -30.45068 -28.77002 -27.76388 -26.07271 -23.90286 -22.44640 -22.07423 -21.24331 -20.03460 -18.77186 -17.46059 -16.79137 -16.43938 -16.23838 -14.98224 -14.83301 -14.33657 -14.19393 -14.07019 -13.76901 -13.46026 -13.19580 -12.71279 -12.49951 -12.22610 -12.14693 -11.94936 -11.53486 -11.23522 -11.13483 -11.09213 -10.92212 -10.85333 -10.76756 -10.59922 -10.56229 -10.19443 -10.15405 -10.12871 -9.95841 -9.29468 -9.10747 -8.34570 -7.16521 -5.97355 -3.96047 2.17775 2.63602 3.36345 3.40363 3.43676 4.44195 4.57255 4.67772 4.75201 4.92651 4.99857 5.06625 5.25823 5.30175 5.33624 5.37265 5.42305 5.49785 5.59520 5.70339 5.85384 5.93616 6.04757 6.07846 6.17183 6.22354 6.29012 6.34896 6.39585 6.45212 6.60599 6.70464 6.72063 6.95773 7.24184 7.41170 7.42275 7.71236 7.90565 8.18967 8.27626 8.62601 9.10969 9.65888 11.12950 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030698 B = 0.004266 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.894185 B = 6562.367597 C = 6910.800999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.066 3.934 3 N -0.530 5.530 4 C 0.194 3.806 5 C -0.500 4.500 6 H 0.070 0.930 7 C 0.053 3.947 8 N -0.902 5.902 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.088 3.912 14 H 0.077 0.923 15 C -0.154 4.154 16 C -0.112 4.112 17 C -0.107 4.107 18 C -0.077 4.077 19 H 0.109 0.891 20 C 0.464 3.536 21 O -0.503 6.503 22 O -0.361 6.361 23 C 0.034 3.966 24 C -0.093 4.093 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.030 0.970 28 H 0.024 0.976 29 H 0.049 0.951 30 H -0.001 1.001 31 H 0.022 0.978 32 H 0.260 0.740 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.910 -5.944 -13.017 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.062 4.062 3 N -0.253 5.253 4 C 0.069 3.931 5 C -0.539 4.539 6 H 0.088 0.912 7 C -0.148 4.148 8 N -0.542 5.542 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.022 4.022 14 H 0.095 0.905 15 C -0.194 4.194 16 C -0.151 4.151 17 C -0.145 4.145 18 C -0.097 4.097 19 H 0.127 0.873 20 C 0.307 3.693 21 O -0.390 6.390 22 O -0.278 6.278 23 C -0.060 4.060 24 C -0.131 4.131 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.016 0.984 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.300 -5.688 -13.359 18.399 hybrid contribution -0.462 -0.197 0.596 0.780 sum 10.838 -5.885 -12.763 17.748 Atomic orbital electron populations 1.21985 0.95402 0.98721 1.04470 1.21892 0.96373 0.89764 0.98209 1.62281 1.15779 1.16818 1.30452 1.19774 0.97500 0.93619 0.82217 1.21296 0.94561 1.40907 0.97102 0.91213 1.24992 0.97447 0.96177 0.96184 1.69951 1.33863 1.46840 1.03508 0.86629 0.85232 0.78992 0.76981 1.20272 1.21514 1.20235 1.21666 0.89734 0.98332 0.92427 0.90490 1.22335 0.94989 1.00807 1.01235 1.21475 0.97490 1.01930 0.94157 1.21524 0.99249 0.97986 0.95746 1.21162 1.00141 1.02462 0.85901 0.87305 1.24033 0.81096 0.73172 0.90995 1.90674 1.35048 1.44157 1.69116 1.86521 1.35143 1.81402 1.24731 1.23229 1.03437 1.01334 0.77958 1.21502 0.91801 1.03499 0.96263 0.92937 0.89609 0.95063 0.95754 0.93233 0.98358 0.96027 0.93033 0.91255 0.91916 0.91817 0.91594 0.91659 0.90959 0.91981 0.88305 0.92054 0.91209 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.76 37.16 0.33 -2.61 16 2 C 0.07 1.28 4.22 -3.82 -0.02 1.26 16 3 N -0.53 -11.12 4.35 -228.08 -0.99 -12.11 16 4 C 0.19 4.90 4.19 -4.97 -0.02 4.88 16 5 C -0.50 -13.71 7.08 -34.44 -0.24 -13.95 16 6 H 0.07 1.90 6.28 -52.49 -0.33 1.57 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.09 1.50 2.16 -67.71 -0.15 1.36 16 14 H 0.08 1.35 7.72 -51.93 -0.40 0.95 16 15 C -0.15 -2.35 4.52 -26.73 -0.12 -2.47 16 16 C -0.11 -1.32 5.92 -26.74 -0.16 -1.48 16 17 C -0.11 -1.18 5.14 -26.73 -0.14 -1.31 16 18 C -0.08 -0.95 2.63 -91.77 -0.24 -1.20 16 19 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 20 C 0.46 6.18 7.26 36.00 0.26 6.44 16 21 O -0.50 -8.16 15.73 -18.76 -0.30 -8.46 16 22 O -0.36 -4.11 10.47 -39.26 -0.41 -4.52 16 23 C 0.03 0.29 10.56 101.05 1.07 1.36 16 24 C -0.09 -1.41 3.80 -26.73 -0.10 -1.51 16 25 H 0.05 1.05 8.10 -51.93 -0.42 0.63 16 26 H 0.09 1.94 5.73 -51.93 -0.30 1.65 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.49 7.07 -51.93 -0.37 0.12 16 29 H 0.05 0.87 5.93 -51.93 -0.31 0.56 16 30 H 0.00 -0.04 7.29 -51.93 -0.38 -0.42 16 31 H 0.02 0.58 7.65 -51.93 -0.40 0.19 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 33 H 0.07 1.20 7.36 -51.93 -0.38 0.82 16 34 H 0.06 0.96 6.65 -51.93 -0.35 0.61 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 39 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 42 H 0.07 1.12 6.37 -51.93 -0.33 0.79 16 43 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -30.56 332.16 -7.92 -38.48 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.31 Total: -1.32 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 0.37 Total: -7.87 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.26 Total: -37.91 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.71 Total: -12.98 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.56 -7.92 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172615787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.594 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds