Wall clock time and date at job start Mon Mar 30 2020 01:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.47104 * 2 1 4 4 C 1.46902 * 110.99880 * 76.16344 * 3 2 1 5 5 C 1.50702 * 109.46814 * 282.49790 * 4 3 2 6 6 H 1.07999 * 120.00398 * 354.67679 * 5 4 3 7 7 C 1.37883 * 119.99660 * 174.67604 * 5 4 3 8 8 N 1.31515 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99702 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47298 * 60.00252 * 9 7 5 11 11 H 1.48504 * 109.47175 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47304 * 300.00080 * 9 7 5 13 13 C 1.46896 * 110.99920 * 200.11436 * 3 2 1 14 14 H 1.08997 * 109.47202 * 189.64615 * 13 3 2 15 15 C 1.53006 * 109.47250 * 309.64581 * 13 3 2 16 16 C 1.52993 * 109.47280 * 179.97438 * 15 13 3 17 17 C 1.52998 * 109.47644 * 300.00422 * 16 15 13 18 18 C 1.53006 * 109.47127 * 59.99484 * 17 16 15 19 19 H 1.08997 * 109.46990 * 60.00484 * 18 17 16 20 20 C 1.50698 * 109.47040 * 180.02562 * 18 17 16 21 21 O 1.20833 * 119.99875 * 119.99969 * 20 18 17 22 22 O 1.34231 * 120.00486 * 300.00225 * 20 18 17 23 23 C 1.45198 * 117.00445 * 179.97438 * 22 20 18 24 24 C 1.52995 * 109.47067 * 300.00228 * 18 17 16 25 25 H 1.08999 * 109.46736 * 52.15162 * 1 2 3 26 26 H 1.08997 * 109.47240 * 292.14707 * 1 2 3 27 27 H 1.09001 * 109.46974 * 172.14415 * 1 2 3 28 28 H 1.09002 * 109.46603 * 119.99816 * 2 1 3 29 29 H 1.08999 * 109.47219 * 239.99505 * 2 1 3 30 30 H 1.09000 * 109.47485 * 42.49520 * 4 3 2 31 31 H 1.09000 * 109.46952 * 162.49969 * 4 3 2 32 32 H 0.97004 * 119.99503 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46982 * 300.00051 * 15 13 3 34 34 H 1.09003 * 109.46694 * 60.00223 * 15 13 3 35 35 H 1.08998 * 109.47633 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.46846 * 59.99852 * 16 15 13 37 37 H 1.08997 * 109.46790 * 299.99845 * 17 16 15 38 38 H 1.09000 * 109.47641 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.46845 * 59.99686 * 23 22 20 40 40 H 1.08993 * 109.47399 * 180.02562 * 23 22 20 41 41 H 1.09005 * 109.46900 * 300.00452 * 23 22 20 42 42 H 1.08997 * 109.47424 * 299.99990 * 24 18 17 43 43 H 1.09006 * 109.47179 * 179.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8859 1.9906 1.3317 5 6 0.4498 2.3848 1.5622 6 1 -0.2727 2.2832 0.7659 7 6 0.0581 2.8752 2.7899 8 7 0.9379 2.9994 3.7595 9 14 -1.7222 3.3632 3.0759 10 1 -2.5989 2.1834 2.8646 11 1 -1.8828 3.8569 4.4672 12 1 -2.1002 4.4377 2.1232 13 6 3.4093 1.4520 -0.4716 14 1 3.8027 2.4542 -0.3017 15 6 4.2575 0.4346 0.2942 16 6 5.7046 0.5040 -0.1974 17 6 5.7512 0.1842 -1.6929 18 6 4.9030 1.2016 -2.4587 19 1 5.2966 2.2037 -2.2891 20 6 4.9484 0.8862 -3.9316 21 8 3.9280 0.6321 -4.5268 22 8 6.1224 0.8873 -4.5824 23 6 6.0907 0.5740 -5.9999 24 6 3.4558 1.1321 -1.9671 25 1 -0.3633 0.6306 -0.8115 26 1 -0.3633 0.3874 0.9518 27 1 -0.3633 -1.0180 -0.1405 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 2.1913 1.2705 2.0907 31 1 2.5200 2.8751 1.3939 32 1 0.6622 3.3441 4.6233 33 1 4.2240 0.6623 1.3597 34 1 3.8641 -0.5676 0.1242 35 1 6.3088 -0.2211 0.3478 36 1 6.0982 1.5063 -0.0279 37 1 5.3576 -0.8180 -1.8624 38 1 6.7822 0.2341 -2.0432 39 1 5.4673 1.3020 -6.5190 40 1 7.1029 0.6091 -6.4025 41 1 5.6779 -0.4248 -6.1420 42 1 3.0622 0.1299 -2.1367 43 1 2.8516 1.8572 -2.5124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172615787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:26 Heat of formation + Delta-G solvation = -118.459105 kcal Electronic energy + Delta-G solvation = -21724.653530 eV Core-core repulsion = 18575.501599 eV Total energy + Delta-G solvation = -3149.151930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.79066 -40.17591 -37.64102 -37.00544 -34.58945 -32.32491 -31.81263 -30.48025 -28.64555 -27.82151 -25.02647 -24.28254 -23.47262 -22.42989 -21.22879 -20.13208 -18.68922 -18.27292 -17.74303 -17.38177 -16.68017 -16.18521 -15.89307 -15.53749 -15.34678 -15.17766 -14.63454 -14.27842 -14.20306 -13.88082 -13.54356 -13.44686 -13.13692 -12.99797 -12.95553 -12.73305 -12.59785 -12.40615 -12.35351 -12.04313 -11.95300 -11.79320 -11.67073 -11.58720 -11.48025 -11.21275 -11.08804 -10.93008 -10.50166 -8.89295 -8.12810 -6.19134 1.15799 1.42390 1.44612 1.52121 1.73384 2.43703 3.18335 3.26851 3.59923 3.71950 3.87009 4.13237 4.18163 4.23078 4.32224 4.34366 4.34799 4.43272 4.48846 4.51995 4.64501 4.68685 4.73206 4.84285 4.90944 5.02550 5.08211 5.13696 5.15027 5.21073 5.26334 5.30327 5.31807 5.37717 5.47150 5.48401 5.68763 5.76743 6.17733 6.47205 6.72680 6.74972 6.95403 7.47570 8.96829 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030698 B = 0.004266 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.894185 B = 6562.367597 C = 6910.800999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 N -0.541 5.541 4 C 0.214 3.786 5 C -0.509 4.509 6 H 0.069 0.931 7 C 0.001 3.999 8 N -0.937 5.937 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.271 1.271 13 C 0.085 3.915 14 H 0.068 0.932 15 C -0.148 4.148 16 C -0.105 4.105 17 C -0.099 4.099 18 C -0.074 4.074 19 H 0.125 0.875 20 C 0.470 3.530 21 O -0.538 6.538 22 O -0.358 6.358 23 C 0.027 3.973 24 C -0.080 4.080 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.015 0.985 29 H 0.074 0.926 30 H -0.030 1.030 31 H -0.004 1.004 32 H 0.261 0.739 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.134 0.866 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.869 -6.640 -14.491 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 N -0.264 5.264 4 C 0.087 3.913 5 C -0.548 4.548 6 H 0.087 0.913 7 C -0.197 4.197 8 N -0.578 5.578 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.196 1.196 13 C -0.024 4.024 14 H 0.086 0.914 15 C -0.187 4.187 16 C -0.143 4.143 17 C -0.136 4.136 18 C -0.093 4.093 19 H 0.143 0.857 20 C 0.315 3.685 21 O -0.428 6.428 22 O -0.274 6.274 23 C -0.067 4.067 24 C -0.118 4.118 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.033 0.967 29 H 0.093 0.907 30 H -0.012 1.012 31 H 0.014 0.986 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.152 0.848 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.285 -6.392 -14.858 20.311 hybrid contribution -0.702 0.002 0.977 1.203 sum 11.584 -6.390 -13.881 19.175 Atomic orbital electron populations 1.21894 0.95530 1.00288 1.02361 1.21911 0.96270 0.88923 0.98864 1.62195 1.18799 1.17838 1.27571 1.19372 0.96011 0.92071 0.83807 1.21604 0.95479 1.40487 0.97199 0.91290 1.25821 1.01683 0.96193 0.95972 1.70078 1.35923 1.47886 1.03950 0.85596 0.80187 0.78903 0.76921 1.19310 1.21147 1.19605 1.21733 0.87968 0.98674 0.93980 0.91401 1.22216 0.97406 0.99857 0.99213 1.21436 0.94808 1.03058 0.94996 1.21497 1.00338 0.97297 0.94498 1.21107 0.98259 1.04060 0.85893 0.85693 1.24044 0.81118 0.72249 0.91123 1.90668 1.36296 1.45952 1.69877 1.86502 1.33779 1.80885 1.26257 1.23547 1.05667 1.01174 0.76263 1.21291 0.93936 1.02351 0.94240 0.93368 0.92813 0.92054 0.96669 0.90741 1.01200 0.98556 0.92992 0.94111 0.91850 0.89936 0.90933 0.91587 0.88331 0.92289 0.84819 0.92104 0.91836 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.64 8.76 71.98 0.63 -5.01 16 2 C 0.07 2.66 4.22 86.30 0.36 3.02 16 3 N -0.54 -23.25 4.35 -875.50 -3.81 -27.06 16 4 C 0.21 11.27 4.19 85.56 0.36 11.62 16 5 C -0.51 -28.67 7.08 25.60 0.18 -28.49 16 6 H 0.07 3.82 6.28 -2.91 -0.02 3.81 16 7 C 0.00 0.03 5.46 84.66 0.46 0.49 16 8 N -0.94 -56.58 13.29 21.45 0.28 -56.30 16 9 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.09 2.94 2.16 44.92 0.10 3.04 16 14 H 0.07 2.45 7.72 -2.39 -0.02 2.43 16 15 C -0.15 -4.47 4.52 30.59 0.14 -4.33 16 16 C -0.10 -2.24 5.92 30.59 0.18 -2.06 16 17 C -0.10 -1.86 5.14 30.60 0.16 -1.70 16 18 C -0.07 -1.68 2.63 -11.54 -0.03 -1.71 16 19 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 20 C 0.47 11.63 7.26 71.24 0.52 12.14 16 21 O -0.54 -16.91 15.73 21.94 0.35 -16.57 16 22 O -0.36 -7.16 10.47 -51.43 -0.54 -7.70 16 23 C 0.03 0.38 10.56 113.37 1.20 1.58 16 24 C -0.08 -2.39 3.80 30.59 0.12 -2.28 16 25 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 26 H 0.05 2.46 5.73 -2.39 -0.01 2.44 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.02 0.62 7.07 -2.39 -0.02 0.60 16 29 H 0.07 2.53 5.93 -2.39 -0.01 2.52 16 30 H -0.03 -1.71 7.29 -2.39 -0.02 -1.73 16 31 H 0.00 -0.21 7.65 -2.39 -0.02 -0.22 16 32 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 33 H 0.04 1.46 7.36 -2.39 -0.02 1.44 16 34 H 0.06 1.89 6.65 -2.39 -0.02 1.87 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 1.44 8.11 -2.39 -0.02 1.42 16 39 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 40 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 0.90 8.13 -2.38 -0.02 0.88 16 42 H 0.06 1.97 6.37 -2.39 -0.02 1.95 16 43 H 0.06 1.98 8.10 -2.38 -0.02 1.96 16 Total: -1.00 -67.58 332.16 3.65 -63.93 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.97 Total: 10.56 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 4.37 Total: -13.68 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -3.53 Total: -83.36 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.19 Total: -24.27 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.58 3.65 -63.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172615787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.531 kcal (2) G-P(sol) polarization free energy of solvation -67.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds