Wall clock time and date at job start Mon Mar 30 2020 01:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.47140 * 2 1 4 4 C 1.46899 * 111.00157 * 294.38735 * 3 2 1 5 5 C 1.50701 * 109.47082 * 295.57215 * 4 3 2 6 6 H 1.07996 * 119.99848 * 354.98010 * 5 4 3 7 7 C 1.37876 * 120.00213 * 174.98284 * 5 4 3 8 8 N 1.31515 * 119.99682 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00243 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47227 * 59.99437 * 9 7 5 11 11 H 1.48502 * 109.47255 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46927 * 299.99506 * 9 7 5 13 13 C 1.46904 * 111.00119 * 58.34123 * 3 2 1 14 14 H 1.09007 * 109.47027 * 296.04467 * 13 3 2 15 15 C 1.53002 * 109.47387 * 176.04599 * 13 3 2 16 16 C 1.52999 * 109.46953 * 179.97438 * 15 13 3 17 17 C 1.53008 * 109.47032 * 60.00477 * 16 15 13 18 18 C 1.52998 * 109.46534 * 299.99488 * 17 16 15 19 19 H 1.08997 * 109.47662 * 300.00099 * 18 17 16 20 20 C 1.50702 * 109.46984 * 180.02562 * 18 17 16 21 21 O 1.20830 * 120.00119 * 240.00588 * 20 18 17 22 22 O 1.34232 * 119.99797 * 59.99770 * 20 18 17 23 23 C 1.45202 * 116.99612 * 180.02562 * 22 20 18 24 24 C 1.52998 * 109.47081 * 56.04384 * 13 3 2 25 25 H 1.09002 * 109.47091 * 62.48147 * 1 2 3 26 26 H 1.08997 * 109.47038 * 182.47726 * 1 2 3 27 27 H 1.09001 * 109.47303 * 302.47604 * 1 2 3 28 28 H 1.09002 * 109.47476 * 239.99987 * 2 1 3 29 29 H 1.08996 * 109.47375 * 120.00120 * 2 1 3 30 30 H 1.08994 * 109.47368 * 55.57153 * 4 3 2 31 31 H 1.08998 * 109.47126 * 175.57239 * 4 3 2 32 32 H 0.97005 * 120.00193 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46551 * 300.00046 * 15 13 3 34 34 H 1.08997 * 109.47069 * 60.00063 * 15 13 3 35 35 H 1.09007 * 109.46990 * 179.97438 * 16 15 13 36 36 H 1.08990 * 109.47521 * 300.00047 * 16 15 13 37 37 H 1.08992 * 109.46818 * 179.97438 * 17 16 15 38 38 H 1.08996 * 109.47071 * 59.99082 * 17 16 15 39 39 H 1.08997 * 109.47486 * 60.00135 * 23 22 20 40 40 H 1.09007 * 109.46942 * 180.02562 * 23 22 20 41 41 H 1.09005 * 109.47458 * 299.99679 * 23 22 20 42 42 H 1.09001 * 109.47371 * 60.00504 * 24 13 3 43 43 H 1.08998 * 109.47172 * 300.00380 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6613 2.0701 -1.2490 5 6 2.3628 1.4057 -2.4055 6 1 3.0723 0.6121 -2.2229 7 6 2.0991 1.8109 -3.6967 8 7 1.2348 2.7770 -3.9191 9 14 2.9681 0.9870 -5.1303 10 1 2.6470 -0.4629 -5.1366 11 1 2.5135 1.6008 -6.4037 12 1 4.4354 1.1684 -4.9900 13 6 1.5165 2.1213 1.1674 14 1 0.4306 2.1965 1.1091 15 6 2.1247 3.5251 1.1859 16 6 1.6001 4.2921 2.4014 17 6 1.9916 3.5498 3.6808 18 6 1.3834 2.1460 3.6622 19 1 0.2976 2.2211 3.6035 20 6 1.7685 1.4150 4.9225 21 8 2.3983 0.3860 4.8557 22 8 1.4119 1.9071 6.1194 23 6 1.8174 1.1506 7.2905 24 6 1.9084 1.3787 2.4464 25 1 -0.3633 0.4748 -0.9114 26 1 -0.3633 -1.0267 0.0444 27 1 -0.3634 0.5518 0.8669 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.5830 2.0141 -1.3977 31 1 1.9663 3.1149 -1.1908 32 1 1.0495 3.0624 -4.8275 33 1 3.2105 3.4498 1.2441 34 1 1.8454 4.0541 0.2747 35 1 2.0337 5.2921 2.4149 36 1 0.5143 4.3673 2.3428 37 1 1.6183 4.0964 4.5466 38 1 3.0774 3.4746 3.7393 39 1 2.9046 1.0762 7.3165 40 1 1.4659 1.6567 8.1896 41 1 1.3858 0.1507 7.2446 42 1 2.9943 1.3036 2.5047 43 1 1.4752 0.3786 2.4332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172615788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:29 Heat of formation + Delta-G solvation = -98.956950 kcal Electronic energy + Delta-G solvation = -21789.874893 eV Core-core repulsion = 18641.568640 eV Total energy + Delta-G solvation = -3148.306254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74820 -38.81789 -36.58257 -35.77722 -32.57947 -31.36801 -29.95962 -28.91974 -27.72071 -25.91267 -24.04434 -22.96824 -22.03372 -20.86683 -19.93137 -18.81597 -17.38145 -16.76253 -16.46046 -16.16662 -15.22004 -14.82914 -14.65412 -14.06583 -13.89892 -13.71898 -13.45300 -13.10262 -12.88405 -12.59257 -12.28343 -11.97566 -11.87005 -11.70084 -11.28118 -11.24474 -11.18144 -10.95417 -10.89956 -10.75644 -10.67960 -10.49973 -10.31219 -10.06694 -9.93020 -9.87707 -9.41875 -9.10178 -8.37523 -7.10098 -5.99183 -3.99297 2.16924 2.63178 3.35694 3.39544 3.42920 4.44083 4.57925 4.68781 4.76747 4.91973 4.99123 5.07355 5.24694 5.35616 5.36130 5.40681 5.50170 5.58400 5.64781 5.67598 5.83496 5.93246 6.01010 6.07589 6.13232 6.15889 6.27708 6.29415 6.42983 6.48411 6.51948 6.68392 6.77997 6.83552 6.99448 7.40331 7.49771 7.70413 7.86245 8.17141 8.27940 8.63451 9.08855 9.64398 11.11481 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033462 B = 0.004291 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.577959 B = 6523.971058 C = 6929.670204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.057 3.943 3 N -0.530 5.530 4 C 0.187 3.813 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.087 3.913 14 H 0.035 0.965 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.108 4.108 18 C -0.077 4.077 19 H 0.105 0.895 20 C 0.464 3.536 21 O -0.504 6.504 22 O -0.361 6.361 23 C 0.034 3.966 24 C -0.097 4.097 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.055 0.945 30 H -0.001 1.001 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.607 0.720 18.600 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.071 4.071 3 N -0.254 5.254 4 C 0.062 3.938 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.022 4.022 14 H 0.053 0.947 15 C -0.155 4.155 16 C -0.153 4.153 17 C -0.145 4.145 18 C -0.096 4.096 19 H 0.123 0.877 20 C 0.307 3.693 21 O -0.391 6.391 22 O -0.278 6.278 23 C -0.060 4.060 24 C -0.134 4.134 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.017 0.983 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.966 0.488 18.479 18.511 hybrid contribution -0.476 -0.589 -0.754 1.069 sum -1.443 -0.102 17.725 17.784 Atomic orbital electron populations 1.22383 0.99623 1.00716 1.01883 1.22026 0.91918 0.91635 1.01553 1.62339 1.58574 1.01572 1.02916 1.19815 0.94865 0.94493 0.84604 1.21143 1.23781 1.19172 0.90225 0.92027 1.24963 0.95407 0.95325 0.98881 1.69946 1.34453 1.28685 1.20892 0.86605 0.80040 0.79550 0.81466 1.20346 1.21457 1.20224 1.21478 0.96594 0.93444 0.90731 0.94725 1.21686 1.01186 0.94930 0.97689 1.21536 1.01140 0.98701 0.93925 1.21531 1.01036 0.92791 0.99165 1.21168 1.03023 0.96371 0.89057 0.87657 1.24039 0.76119 0.83814 0.85303 1.90669 1.36864 1.24012 1.87513 1.86525 1.72683 1.53091 1.15465 1.23232 1.00921 0.96600 0.85211 1.21571 1.02485 0.98344 0.91047 0.91612 0.93591 0.93704 0.89995 0.92681 0.98342 0.95014 0.92986 0.91257 0.90648 0.91441 0.91894 0.91061 0.91371 0.91989 0.88296 0.92044 0.90404 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 9.21 37.16 0.34 -3.06 16 2 C 0.06 1.12 5.38 -3.83 -0.02 1.10 16 3 N -0.53 -11.18 4.58 -228.09 -1.05 -12.22 16 4 C 0.19 4.72 4.33 -4.98 -0.02 4.70 16 5 C -0.50 -14.00 8.31 -34.44 -0.29 -14.29 16 6 H 0.06 1.71 7.22 -52.49 -0.38 1.33 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 9 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.09 1.49 1.38 -67.71 -0.09 1.40 16 14 H 0.03 0.62 6.44 -51.92 -0.33 0.28 16 15 C -0.12 -1.89 4.99 -26.73 -0.13 -2.02 16 16 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 17 C -0.11 -1.21 5.14 -26.73 -0.14 -1.35 16 18 C -0.08 -0.96 2.63 -91.75 -0.24 -1.20 16 19 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 20 C 0.46 6.19 7.26 36.01 0.26 6.46 16 21 O -0.50 -8.13 15.73 -18.75 -0.30 -8.42 16 22 O -0.36 -4.12 10.47 -39.26 -0.41 -4.53 16 23 C 0.03 0.29 10.56 101.05 1.07 1.36 16 24 C -0.10 -1.48 3.42 -26.71 -0.09 -1.57 16 25 H 0.06 1.37 6.57 -51.93 -0.34 1.03 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.75 6.33 -51.93 -0.33 0.42 16 28 H 0.08 1.77 6.71 -51.93 -0.35 1.42 16 29 H 0.05 0.99 6.33 -51.93 -0.33 0.66 16 30 H 0.00 -0.03 6.31 -51.93 -0.33 -0.36 16 31 H 0.03 0.85 5.89 -51.93 -0.31 0.54 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.38 6.23 -51.93 -0.32 1.05 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 40 H 0.10 0.54 8.14 -51.92 -0.42 0.11 16 41 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 42 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 43 H 0.07 1.13 6.32 -51.93 -0.33 0.80 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -30.66 331.07 -7.78 -38.44 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.13 Total: -0.60 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 0.39 Total: -8.58 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.31 Total: -37.96 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.71 Total: -12.95 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.66 -7.78 -38.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172615788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.516 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds