Wall clock time and date at job start Mon Mar 30 2020 01:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.47140 * 2 1 4 4 C 1.46899 * 111.00157 * 294.38735 * 3 2 1 5 5 C 1.50701 * 109.47082 * 295.57215 * 4 3 2 6 6 H 1.07996 * 119.99848 * 354.98010 * 5 4 3 7 7 C 1.37876 * 120.00213 * 174.98284 * 5 4 3 8 8 N 1.31515 * 119.99682 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00243 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47227 * 59.99437 * 9 7 5 11 11 H 1.48502 * 109.47255 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46927 * 299.99506 * 9 7 5 13 13 C 1.46904 * 111.00119 * 58.34123 * 3 2 1 14 14 H 1.09007 * 109.47027 * 296.04467 * 13 3 2 15 15 C 1.53002 * 109.47387 * 176.04599 * 13 3 2 16 16 C 1.52999 * 109.46953 * 179.97438 * 15 13 3 17 17 C 1.53008 * 109.47032 * 60.00477 * 16 15 13 18 18 C 1.52998 * 109.46534 * 299.99488 * 17 16 15 19 19 H 1.08997 * 109.47662 * 300.00099 * 18 17 16 20 20 C 1.50702 * 109.46984 * 180.02562 * 18 17 16 21 21 O 1.20830 * 120.00119 * 240.00588 * 20 18 17 22 22 O 1.34232 * 119.99797 * 59.99770 * 20 18 17 23 23 C 1.45202 * 116.99612 * 180.02562 * 22 20 18 24 24 C 1.52998 * 109.47081 * 56.04384 * 13 3 2 25 25 H 1.09002 * 109.47091 * 62.48147 * 1 2 3 26 26 H 1.08997 * 109.47038 * 182.47726 * 1 2 3 27 27 H 1.09001 * 109.47303 * 302.47604 * 1 2 3 28 28 H 1.09002 * 109.47476 * 239.99987 * 2 1 3 29 29 H 1.08996 * 109.47375 * 120.00120 * 2 1 3 30 30 H 1.08994 * 109.47368 * 55.57153 * 4 3 2 31 31 H 1.08998 * 109.47126 * 175.57239 * 4 3 2 32 32 H 0.97005 * 120.00193 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46551 * 300.00046 * 15 13 3 34 34 H 1.08997 * 109.47069 * 60.00063 * 15 13 3 35 35 H 1.09007 * 109.46990 * 179.97438 * 16 15 13 36 36 H 1.08990 * 109.47521 * 300.00047 * 16 15 13 37 37 H 1.08992 * 109.46818 * 179.97438 * 17 16 15 38 38 H 1.08996 * 109.47071 * 59.99082 * 17 16 15 39 39 H 1.08997 * 109.47486 * 60.00135 * 23 22 20 40 40 H 1.09007 * 109.46942 * 180.02562 * 23 22 20 41 41 H 1.09005 * 109.47458 * 299.99679 * 23 22 20 42 42 H 1.09001 * 109.47371 * 60.00504 * 24 13 3 43 43 H 1.08998 * 109.47172 * 300.00380 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6613 2.0701 -1.2490 5 6 2.3628 1.4057 -2.4055 6 1 3.0723 0.6121 -2.2229 7 6 2.0991 1.8109 -3.6967 8 7 1.2348 2.7770 -3.9191 9 14 2.9681 0.9870 -5.1303 10 1 2.6470 -0.4629 -5.1366 11 1 2.5135 1.6008 -6.4037 12 1 4.4354 1.1684 -4.9900 13 6 1.5165 2.1213 1.1674 14 1 0.4306 2.1965 1.1091 15 6 2.1247 3.5251 1.1859 16 6 1.6001 4.2921 2.4014 17 6 1.9916 3.5498 3.6808 18 6 1.3834 2.1460 3.6622 19 1 0.2976 2.2211 3.6035 20 6 1.7685 1.4150 4.9225 21 8 2.3983 0.3860 4.8557 22 8 1.4119 1.9071 6.1194 23 6 1.8174 1.1506 7.2905 24 6 1.9084 1.3787 2.4464 25 1 -0.3633 0.4748 -0.9114 26 1 -0.3633 -1.0267 0.0444 27 1 -0.3634 0.5518 0.8669 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.5830 2.0141 -1.3977 31 1 1.9663 3.1149 -1.1908 32 1 1.0495 3.0624 -4.8275 33 1 3.2105 3.4498 1.2441 34 1 1.8454 4.0541 0.2747 35 1 2.0337 5.2921 2.4149 36 1 0.5143 4.3673 2.3428 37 1 1.6183 4.0964 4.5466 38 1 3.0774 3.4746 3.7393 39 1 2.9046 1.0762 7.3165 40 1 1.4659 1.6567 8.1896 41 1 1.3858 0.1507 7.2446 42 1 2.9943 1.3036 2.5047 43 1 1.4752 0.3786 2.4332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172615788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:28 Heat of formation + Delta-G solvation = -117.635188 kcal Electronic energy + Delta-G solvation = -21790.684843 eV Core-core repulsion = 18641.568640 eV Total energy + Delta-G solvation = -3149.116203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.78797 -40.16068 -37.66396 -37.10742 -34.68054 -32.59175 -31.25485 -30.60898 -28.57748 -27.70416 -25.46949 -24.32326 -23.62351 -22.01928 -21.10588 -20.24092 -18.50962 -18.31941 -17.75287 -17.40726 -16.67740 -16.51784 -16.20025 -15.37354 -15.08168 -14.91626 -14.85139 -14.48287 -14.10413 -13.84056 -13.66112 -13.39019 -13.28282 -13.01058 -12.90697 -12.74727 -12.59512 -12.51858 -12.35189 -12.13458 -11.97573 -11.77881 -11.65497 -11.56900 -11.40826 -11.27431 -11.08839 -10.84074 -10.51848 -8.84327 -8.16191 -6.24212 1.15508 1.40968 1.43413 1.51150 1.73420 2.42175 3.16255 3.27503 3.61283 3.71866 3.88779 4.16829 4.21207 4.27759 4.32343 4.34861 4.35604 4.44466 4.45255 4.51199 4.53031 4.62778 4.71669 4.74765 4.90763 5.01472 5.07153 5.13663 5.18992 5.21732 5.27698 5.28165 5.32640 5.42523 5.45785 5.51320 5.56822 5.72692 6.15223 6.44455 6.72478 6.77702 6.93035 7.44467 8.94002 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033462 B = 0.004291 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.577959 B = 6523.971058 C = 6929.670204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.057 3.943 3 N -0.541 5.541 4 C 0.206 3.794 5 C -0.521 4.521 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.087 3.913 14 H 0.034 0.966 15 C -0.115 4.115 16 C -0.106 4.106 17 C -0.100 4.100 18 C -0.073 4.073 19 H 0.125 0.875 20 C 0.471 3.529 21 O -0.538 6.538 22 O -0.358 6.358 23 C 0.027 3.973 24 C -0.085 4.085 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.076 0.924 30 H -0.027 1.027 31 H 0.012 0.988 32 H 0.263 0.737 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.134 0.866 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.794 0.714 20.469 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.071 4.071 3 N -0.265 5.265 4 C 0.080 3.920 5 C -0.559 4.559 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.573 5.573 9 Si 0.787 3.213 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.196 1.196 13 C -0.022 4.022 14 H 0.052 0.948 15 C -0.153 4.153 16 C -0.144 4.144 17 C -0.138 4.138 18 C -0.093 4.093 19 H 0.143 0.857 20 C 0.315 3.685 21 O -0.428 6.428 22 O -0.274 6.274 23 C -0.067 4.067 24 C -0.123 4.123 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.095 0.905 30 H -0.009 1.009 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.152 0.848 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.156 0.485 20.380 20.419 hybrid contribution -0.419 -0.592 -1.243 1.440 sum -1.575 -0.107 19.137 19.202 Atomic orbital electron populations 1.22256 0.98302 1.02115 1.00831 1.22016 0.93031 0.90746 1.01326 1.62249 1.59328 1.02345 1.02579 1.19421 0.92795 0.93632 0.86200 1.21456 1.23823 1.19134 0.91490 0.92552 1.25802 0.96075 0.95869 1.01626 1.70066 1.35744 1.29971 1.21551 0.85555 0.78971 0.78746 0.78053 1.19528 1.20851 1.19587 1.21568 0.96483 0.94002 0.90098 0.94788 1.21646 1.00585 0.94504 0.98592 1.21481 1.01700 0.98942 0.92248 1.21506 1.00866 0.91934 0.99462 1.21114 1.04123 0.96466 0.87571 0.85685 1.24028 0.75289 0.83132 0.86057 1.90664 1.38529 1.25535 1.88028 1.86504 1.72229 1.53180 1.15490 1.23550 1.01064 0.96955 0.85085 1.21375 1.01480 0.98188 0.91256 0.94925 0.91187 0.92104 0.92463 0.90536 1.00945 0.96992 0.92848 0.92325 0.93603 0.89718 0.90870 0.88292 0.91736 0.92174 0.84829 0.92193 0.91972 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.38 9.21 71.98 0.66 -5.72 16 2 C 0.06 2.26 5.38 86.30 0.46 2.73 16 3 N -0.54 -23.45 4.58 -875.53 -4.01 -27.46 16 4 C 0.21 10.84 4.33 85.56 0.37 11.21 16 5 C -0.52 -29.79 8.31 25.60 0.21 -29.58 16 6 H 0.06 3.21 7.22 -2.91 -0.02 3.19 16 7 C 0.00 0.24 5.46 84.65 0.46 0.70 16 8 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 9 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 13 C 0.09 3.01 1.38 44.91 0.06 3.07 16 14 H 0.03 1.20 6.44 -2.38 -0.02 1.18 16 15 C -0.12 -3.75 4.99 30.59 0.15 -3.59 16 16 C -0.11 -2.37 5.92 30.60 0.18 -2.19 16 17 C -0.10 -1.98 5.14 30.60 0.16 -1.82 16 18 C -0.07 -1.67 2.63 -11.52 -0.03 -1.70 16 19 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 20 C 0.47 11.54 7.26 71.24 0.52 12.05 16 21 O -0.54 -16.70 15.73 21.95 0.35 -16.35 16 22 O -0.36 -7.10 10.47 -51.43 -0.54 -7.64 16 23 C 0.03 0.38 10.56 113.37 1.20 1.57 16 24 C -0.09 -2.53 3.42 30.61 0.10 -2.42 16 25 H 0.03 1.38 6.57 -2.39 -0.02 1.37 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.06 1.98 6.33 -2.39 -0.02 1.96 16 28 H 0.06 2.54 6.71 -2.39 -0.02 2.52 16 29 H 0.08 2.71 6.33 -2.39 -0.02 2.70 16 30 H -0.03 -1.55 6.31 -2.39 -0.02 -1.56 16 31 H 0.01 0.68 5.89 -2.39 -0.01 0.67 16 32 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.74 6.23 -2.39 -0.01 1.73 16 35 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 1.49 8.11 -2.39 -0.02 1.47 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 40 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.06 0.88 8.13 -2.38 -0.02 0.86 16 42 H 0.06 2.05 8.10 -2.39 -0.02 2.03 16 43 H 0.06 2.00 6.32 -2.39 -0.02 1.98 16 Total: -1.00 -67.91 331.07 3.60 -64.31 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.98 Total: 11.74 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 4.51 Total: -15.68 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -3.73 Total: -83.38 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.19 Total: -23.99 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -67.91 3.60 -64.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172615788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.326 kcal (2) G-P(sol) polarization free energy of solvation -67.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds