Wall clock time and date at job start Mon Mar 30 2020 01:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46906 * 109.46788 * 2 1 4 4 C 1.46903 * 110.99794 * 298.66322 * 3 2 1 5 5 C 1.50700 * 109.46995 * 296.63305 * 4 3 2 6 6 H 1.07997 * 120.00624 * 354.91172 * 5 4 3 7 7 C 1.37881 * 119.99807 * 174.91212 * 5 4 3 8 8 N 1.31520 * 119.99864 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00041 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46897 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47204 * 120.00076 * 9 7 5 12 12 H 1.48501 * 109.46998 * 240.00060 * 9 7 5 13 13 C 1.46897 * 110.99955 * 62.61950 * 3 2 1 14 14 H 1.08999 * 109.47049 * 296.04460 * 13 3 2 15 15 C 1.53001 * 109.47002 * 176.04423 * 13 3 2 16 16 C 1.52993 * 109.47462 * 179.97438 * 15 13 3 17 17 C 1.53002 * 109.47029 * 59.99858 * 16 15 13 18 18 C 1.53001 * 109.47114 * 300.00355 * 17 16 15 19 19 H 1.08999 * 109.46695 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.46850 * 299.99961 * 18 17 16 21 21 O 1.20824 * 120.00048 * 120.00671 * 20 18 17 22 22 O 1.34236 * 120.00035 * 299.99642 * 20 18 17 23 23 C 1.45196 * 116.99935 * 180.02562 * 22 20 18 24 24 C 1.52993 * 109.47090 * 59.99946 * 18 17 16 25 25 H 1.09001 * 109.46704 * 183.21279 * 1 2 3 26 26 H 1.08998 * 109.47207 * 303.21396 * 1 2 3 27 27 H 1.08999 * 109.46794 * 63.21679 * 1 2 3 28 28 H 1.08994 * 109.47113 * 239.99995 * 2 1 3 29 29 H 1.08997 * 109.46594 * 119.99693 * 2 1 3 30 30 H 1.09000 * 109.46889 * 56.63458 * 4 3 2 31 31 H 1.08998 * 109.46949 * 176.63161 * 4 3 2 32 32 H 0.96996 * 119.99361 * 180.02562 * 8 7 5 33 33 H 1.09012 * 109.46998 * 59.99581 * 15 13 3 34 34 H 1.09003 * 109.46971 * 300.00329 * 15 13 3 35 35 H 1.08996 * 109.47438 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.47381 * 300.00182 * 16 15 13 37 37 H 1.08999 * 109.46973 * 60.00415 * 17 16 15 38 38 H 1.09005 * 109.46944 * 180.02562 * 17 16 15 39 39 H 1.08998 * 109.47293 * 299.99988 * 23 22 20 40 40 H 1.09001 * 109.47595 * 60.00206 * 23 22 20 41 41 H 1.08999 * 109.47509 * 180.02562 * 23 22 20 42 42 H 1.09003 * 109.47596 * 59.99914 * 24 18 17 43 43 H 1.09005 * 109.46956 * 180.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5749 2.1006 -1.2034 5 6 2.1721 1.4497 -2.4243 6 1 2.8817 0.6431 -2.3139 7 6 1.8126 1.8841 -3.6826 8 7 0.9489 2.8667 -3.8172 9 14 2.5523 1.0768 -5.1961 10 1 3.4894 0.0040 -4.7767 11 1 1.4681 0.4905 -6.0243 12 1 3.2870 2.0939 -5.9904 13 6 1.6005 2.0916 1.2178 14 1 0.5133 2.1672 1.2379 15 6 2.2096 3.4951 1.2284 16 6 1.7726 4.2312 2.4963 17 6 2.2523 3.4577 3.7261 18 6 1.6432 2.0543 3.7156 19 1 1.9847 1.5034 4.5919 20 6 0.1401 2.1589 3.7428 21 8 -0.5144 1.6924 2.8406 22 8 -0.4717 2.7702 4.7694 23 6 -1.9217 2.8334 4.7296 24 6 2.0803 1.3182 2.4476 25 1 -0.3633 -1.0261 0.0576 26 1 -0.3633 0.5629 0.8598 27 1 -0.3633 0.4631 -0.9174 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.4874 2.0635 -1.2670 31 1 1.9004 3.1395 -1.1495 32 1 0.6958 3.1720 -4.7024 33 1 1.8674 4.0463 0.3523 34 1 3.2968 3.4194 1.2081 35 1 2.2061 5.2312 2.5036 36 1 0.6853 4.3069 2.5161 37 1 3.3395 3.3821 3.7064 38 1 1.9405 3.9820 4.6295 39 1 -2.2375 3.3735 3.8370 40 1 -2.3291 1.8227 4.7058 41 1 -2.2873 3.3521 5.6158 42 1 3.1675 1.2425 2.4278 43 1 1.6459 0.3184 2.4398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172615790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:33 Heat of formation + Delta-G solvation = -92.039689 kcal Electronic energy + Delta-G solvation = -22468.826715 eV Core-core repulsion = 19320.820417 eV Total energy + Delta-G solvation = -3148.006299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.90511 -38.53524 -36.34376 -35.70993 -32.50626 -31.24099 -29.90588 -28.71661 -27.65337 -25.83520 -23.91256 -22.97173 -21.94223 -21.15080 -19.70170 -18.78572 -17.24546 -16.56751 -16.19724 -16.04157 -15.35180 -14.73442 -14.61863 -13.94306 -13.85101 -13.54196 -13.39517 -13.00243 -12.67572 -12.27997 -12.05053 -11.98198 -11.84361 -11.74381 -11.59549 -11.10664 -11.09269 -10.88966 -10.79095 -10.65625 -10.58985 -10.47065 -10.20212 -9.88957 -9.85260 -9.58425 -9.29207 -8.99618 -8.32638 -6.94301 -5.94252 -3.94080 2.31029 2.75217 3.35221 3.42499 3.47588 4.47600 4.61565 4.78040 4.82621 5.02742 5.03478 5.12040 5.31906 5.36507 5.41191 5.47470 5.61081 5.64031 5.70715 5.74372 5.98377 6.02934 6.11612 6.19053 6.21754 6.24556 6.31468 6.44841 6.50352 6.57398 6.71828 6.78669 6.90997 7.02370 7.20501 7.50275 7.62543 7.88763 7.92346 8.24894 8.38000 8.72542 9.15055 9.69415 11.16639 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.005092 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.526639 B = 5497.619107 C = 5687.794527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.063 3.937 3 N -0.532 5.532 4 C 0.187 3.813 5 C -0.501 4.501 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.070 3.930 14 H 0.063 0.937 15 C -0.116 4.116 16 C -0.121 4.121 17 C -0.108 4.108 18 C -0.076 4.076 19 H 0.104 0.896 20 C 0.461 3.539 21 O -0.489 6.489 22 O -0.363 6.363 23 C 0.035 3.965 24 C -0.100 4.100 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.050 0.950 30 H -0.001 1.001 31 H 0.029 0.971 32 H 0.259 0.741 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 0.445 18.558 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.065 4.065 3 N -0.256 5.256 4 C 0.062 3.938 5 C -0.539 4.539 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.211 1.211 13 C -0.038 4.038 14 H 0.080 0.920 15 C -0.154 4.154 16 C -0.159 4.159 17 C -0.146 4.146 18 C -0.096 4.096 19 H 0.122 0.878 20 C 0.303 3.697 21 O -0.375 6.375 22 O -0.281 6.281 23 C -0.059 4.059 24 C -0.137 4.137 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.017 0.983 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.776 0.399 18.129 18.150 hybrid contribution -0.907 -0.363 -1.016 1.409 sum -1.683 0.036 17.114 17.196 Atomic orbital electron populations 1.22454 0.99269 1.00509 1.03031 1.21939 0.92382 0.91519 1.00675 1.62370 1.59272 1.01756 1.02181 1.19792 0.94355 0.94001 0.85655 1.21234 1.24568 1.18085 0.90055 0.91981 1.24975 0.95351 0.95324 0.99020 1.69980 1.33451 1.27689 1.22911 0.86507 0.78950 0.79335 0.83022 1.19707 1.21256 1.21135 1.21773 0.98975 0.92792 0.90299 0.91986 1.21676 1.01254 0.95664 0.96793 1.21599 1.00428 0.99007 0.94898 1.21554 1.01193 0.92895 0.98957 1.21181 0.86744 0.99903 1.01758 0.87817 1.23953 0.92169 0.74342 0.79203 1.90644 1.67162 1.43989 1.35750 1.86500 1.23115 1.71896 1.46542 1.23209 0.76929 1.02543 1.03233 1.21592 1.01628 0.98797 0.91704 0.94316 0.91659 0.91882 0.90608 0.93193 0.98310 0.95305 0.93175 0.91006 0.91394 0.91515 0.92926 0.90184 0.91144 0.91922 0.92096 0.88460 0.90010 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.00 9.22 37.16 0.34 -3.66 16 2 C 0.06 1.31 5.43 -3.82 -0.02 1.29 16 3 N -0.53 -11.75 4.59 -228.08 -1.05 -12.80 16 4 C 0.19 4.97 4.23 -4.97 -0.02 4.94 16 5 C -0.50 -14.31 8.36 -34.44 -0.29 -14.59 16 6 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 9 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.07 1.31 1.21 -67.71 -0.08 1.23 16 14 H 0.06 1.30 4.15 -51.93 -0.22 1.08 16 15 C -0.12 -2.01 4.99 -26.73 -0.13 -2.14 16 16 C -0.12 -1.65 5.70 -26.73 -0.15 -1.80 16 17 C -0.11 -1.20 5.39 -26.73 -0.14 -1.34 16 18 C -0.08 -0.93 3.11 -91.77 -0.29 -1.21 16 19 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 20 C 0.46 6.47 5.74 36.01 0.21 6.68 16 21 O -0.49 -8.43 11.93 -18.75 -0.22 -8.65 16 22 O -0.36 -4.43 10.47 -39.27 -0.41 -4.84 16 23 C 0.03 0.34 10.56 101.05 1.07 1.41 16 24 C -0.10 -1.48 4.02 -26.74 -0.11 -1.59 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.35 4.87 -51.93 -0.25 1.10 16 27 H 0.06 1.49 6.53 -51.93 -0.34 1.15 16 28 H 0.08 1.70 6.74 -51.93 -0.35 1.35 16 29 H 0.05 0.91 6.09 -51.93 -0.32 0.59 16 30 H 0.00 -0.03 6.23 -51.93 -0.32 -0.35 16 31 H 0.03 0.81 5.94 -51.93 -0.31 0.50 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.07 1.43 6.25 -51.92 -0.32 1.11 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.77 7.22 -51.93 -0.37 0.40 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 39 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 40 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 1.09 6.25 -51.93 -0.32 0.77 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -31.90 321.63 -7.70 -39.60 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.86 Total: 0.67 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 0.28 Total: -9.34 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.31 Total: -39.35 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.63 Total: -13.50 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.90 -7.70 -39.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172615790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.440 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds