Wall clock time and date at job start Mon Mar 30 2020 01:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46906 * 109.46788 * 2 1 4 4 C 1.46903 * 110.99794 * 298.66322 * 3 2 1 5 5 C 1.50700 * 109.46995 * 296.63305 * 4 3 2 6 6 H 1.07997 * 120.00624 * 354.91172 * 5 4 3 7 7 C 1.37881 * 119.99807 * 174.91212 * 5 4 3 8 8 N 1.31520 * 119.99864 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00041 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46897 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47204 * 120.00076 * 9 7 5 12 12 H 1.48501 * 109.46998 * 240.00060 * 9 7 5 13 13 C 1.46897 * 110.99955 * 62.61950 * 3 2 1 14 14 H 1.08999 * 109.47049 * 296.04460 * 13 3 2 15 15 C 1.53001 * 109.47002 * 176.04423 * 13 3 2 16 16 C 1.52993 * 109.47462 * 179.97438 * 15 13 3 17 17 C 1.53002 * 109.47029 * 59.99858 * 16 15 13 18 18 C 1.53001 * 109.47114 * 300.00355 * 17 16 15 19 19 H 1.08999 * 109.46695 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.46850 * 299.99961 * 18 17 16 21 21 O 1.20824 * 120.00048 * 120.00671 * 20 18 17 22 22 O 1.34236 * 120.00035 * 299.99642 * 20 18 17 23 23 C 1.45196 * 116.99935 * 180.02562 * 22 20 18 24 24 C 1.52993 * 109.47090 * 59.99946 * 18 17 16 25 25 H 1.09001 * 109.46704 * 183.21279 * 1 2 3 26 26 H 1.08998 * 109.47207 * 303.21396 * 1 2 3 27 27 H 1.08999 * 109.46794 * 63.21679 * 1 2 3 28 28 H 1.08994 * 109.47113 * 239.99995 * 2 1 3 29 29 H 1.08997 * 109.46594 * 119.99693 * 2 1 3 30 30 H 1.09000 * 109.46889 * 56.63458 * 4 3 2 31 31 H 1.08998 * 109.46949 * 176.63161 * 4 3 2 32 32 H 0.96996 * 119.99361 * 180.02562 * 8 7 5 33 33 H 1.09012 * 109.46998 * 59.99581 * 15 13 3 34 34 H 1.09003 * 109.46971 * 300.00329 * 15 13 3 35 35 H 1.08996 * 109.47438 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.47381 * 300.00182 * 16 15 13 37 37 H 1.08999 * 109.46973 * 60.00415 * 17 16 15 38 38 H 1.09005 * 109.46944 * 180.02562 * 17 16 15 39 39 H 1.08998 * 109.47293 * 299.99988 * 23 22 20 40 40 H 1.09001 * 109.47595 * 60.00206 * 23 22 20 41 41 H 1.08999 * 109.47509 * 180.02562 * 23 22 20 42 42 H 1.09003 * 109.47596 * 59.99914 * 24 18 17 43 43 H 1.09005 * 109.46956 * 180.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5749 2.1006 -1.2034 5 6 2.1721 1.4497 -2.4243 6 1 2.8817 0.6431 -2.3139 7 6 1.8126 1.8841 -3.6826 8 7 0.9489 2.8667 -3.8172 9 14 2.5523 1.0768 -5.1961 10 1 3.4894 0.0040 -4.7767 11 1 1.4681 0.4905 -6.0243 12 1 3.2870 2.0939 -5.9904 13 6 1.6005 2.0916 1.2178 14 1 0.5133 2.1672 1.2379 15 6 2.2096 3.4951 1.2284 16 6 1.7726 4.2312 2.4963 17 6 2.2523 3.4577 3.7261 18 6 1.6432 2.0543 3.7156 19 1 1.9847 1.5034 4.5919 20 6 0.1401 2.1589 3.7428 21 8 -0.5144 1.6924 2.8406 22 8 -0.4717 2.7702 4.7694 23 6 -1.9217 2.8334 4.7296 24 6 2.0803 1.3182 2.4476 25 1 -0.3633 -1.0261 0.0576 26 1 -0.3633 0.5629 0.8598 27 1 -0.3633 0.4631 -0.9174 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.4874 2.0635 -1.2670 31 1 1.9004 3.1395 -1.1495 32 1 0.6958 3.1720 -4.7024 33 1 1.8674 4.0463 0.3523 34 1 3.2968 3.4194 1.2081 35 1 2.2061 5.2312 2.5036 36 1 0.6853 4.3069 2.5161 37 1 3.3395 3.3821 3.7064 38 1 1.9405 3.9820 4.6295 39 1 -2.2375 3.3735 3.8370 40 1 -2.3291 1.8227 4.7058 41 1 -2.2873 3.3521 5.6158 42 1 3.1675 1.2425 2.4278 43 1 1.6459 0.3184 2.4398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172615790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:32 Heat of formation + Delta-G solvation = -112.734650 kcal Electronic energy + Delta-G solvation = -22469.724116 eV Core-core repulsion = 19320.820417 eV Total energy + Delta-G solvation = -3148.903699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.01532 -39.88686 -37.58652 -37.03204 -34.68276 -32.51331 -31.26828 -30.51505 -28.61563 -27.69426 -25.42756 -24.34749 -23.58449 -22.41126 -20.91829 -20.29399 -18.44990 -18.28804 -17.61447 -17.10574 -16.73828 -16.64269 -16.23390 -15.37607 -15.06655 -14.94168 -14.67445 -14.46378 -14.12442 -13.68912 -13.55240 -13.38018 -13.10322 -13.07160 -12.98112 -12.87319 -12.69176 -12.49945 -12.43921 -12.10378 -11.93956 -11.89305 -11.72684 -11.47232 -11.32088 -11.09513 -10.92602 -10.78684 -10.53175 -8.79963 -8.17994 -6.27129 1.26225 1.39036 1.39352 1.53369 1.83041 2.40606 3.14423 3.29475 3.73564 3.76610 3.84336 4.16303 4.26643 4.30710 4.31202 4.32878 4.38181 4.45590 4.52918 4.53650 4.63764 4.70199 4.71005 4.84452 4.94926 4.99074 5.06284 5.08560 5.20670 5.23477 5.26931 5.29707 5.37666 5.42331 5.44042 5.59433 5.62355 5.73416 6.13147 6.44801 6.78463 6.84603 6.92074 7.42232 8.93344 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.005092 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.526639 B = 5497.619107 C = 5687.794527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.064 3.936 3 N -0.534 5.534 4 C 0.207 3.793 5 C -0.516 4.516 6 H 0.062 0.938 7 C -0.001 4.001 8 N -0.938 5.938 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.277 1.277 13 C 0.068 3.932 14 H 0.037 0.963 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.101 4.101 18 C -0.072 4.072 19 H 0.146 0.854 20 C 0.458 3.542 21 O -0.531 6.531 22 O -0.359 6.359 23 C 0.029 3.971 24 C -0.093 4.093 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.021 0.979 28 H 0.056 0.944 29 H 0.086 0.914 30 H -0.039 1.039 31 H 0.005 0.995 32 H 0.262 0.738 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.034 0.966 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.134 0.866 42 H 0.097 0.903 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 -0.340 20.853 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.064 4.064 3 N -0.258 5.258 4 C 0.080 3.920 5 C -0.554 4.554 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.580 5.580 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.203 1.203 13 C -0.041 4.041 14 H 0.055 0.945 15 C -0.152 4.152 16 C -0.154 4.154 17 C -0.138 4.138 18 C -0.091 4.091 19 H 0.164 0.836 20 C 0.303 3.697 21 O -0.420 6.420 22 O -0.275 6.275 23 C -0.064 4.064 24 C -0.130 4.130 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.104 0.896 30 H -0.022 1.022 31 H 0.023 0.977 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.053 0.947 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.152 0.848 42 H 0.116 0.884 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.806 -0.383 20.465 20.484 hybrid contribution -1.478 -0.078 -1.678 2.237 sum -0.672 -0.461 18.787 18.805 Atomic orbital electron populations 1.22315 0.99404 1.01512 1.00762 1.21975 0.92188 0.90827 1.01385 1.62324 1.59117 1.02340 1.01989 1.19377 0.91703 0.93237 0.87666 1.21530 1.24624 1.18128 0.91144 0.91994 1.25913 0.95635 0.95785 1.02482 1.70123 1.34795 1.29174 1.23863 0.85364 0.78260 0.78561 0.78628 1.18535 1.20726 1.20316 1.21887 0.97826 0.93925 0.90430 0.94481 1.21627 1.01252 0.94950 0.97321 1.21561 0.99444 1.00009 0.94364 1.21575 1.02414 0.91694 0.98081 1.21271 0.85410 1.00851 1.01611 0.83621 1.24427 0.93051 0.73459 0.78758 1.90641 1.68193 1.45906 1.37264 1.86488 1.24287 1.71194 1.45564 1.23452 0.75753 1.02854 1.04375 1.21514 1.02389 0.98166 0.90947 0.91811 0.91715 0.96025 0.92512 0.89631 1.02172 0.97717 0.92939 0.95291 0.90875 0.89736 0.94708 0.87876 0.88578 0.93322 0.92217 0.84809 0.88426 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.73 9.22 71.98 0.66 -7.06 16 2 C 0.06 2.69 5.43 86.30 0.47 3.16 16 3 N -0.53 -24.29 4.59 -875.51 -4.02 -28.31 16 4 C 0.21 11.64 4.23 85.56 0.36 12.00 16 5 C -0.52 -30.51 8.36 25.60 0.21 -30.29 16 6 H 0.06 3.59 7.12 -2.91 -0.02 3.57 16 7 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 8 N -0.94 -59.09 13.29 21.45 0.28 -58.81 16 9 Si 0.97 46.02 29.54 68.60 2.03 48.04 16 10 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.07 2.56 1.21 44.92 0.05 2.61 16 14 H 0.04 1.63 4.15 -2.39 -0.01 1.62 16 15 C -0.11 -4.02 4.99 30.59 0.15 -3.87 16 16 C -0.12 -3.02 5.70 30.59 0.17 -2.84 16 17 C -0.10 -1.84 5.39 30.60 0.16 -1.67 16 18 C -0.07 -1.51 3.11 -11.54 -0.04 -1.55 16 19 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 20 C 0.46 12.14 5.74 71.24 0.41 12.55 16 21 O -0.53 -18.40 11.93 21.97 0.26 -18.14 16 22 O -0.36 -7.93 10.47 -51.47 -0.54 -8.47 16 23 C 0.03 0.53 10.56 113.37 1.20 1.72 16 24 C -0.09 -2.56 4.02 30.59 0.12 -2.44 16 25 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 2.77 4.87 -2.39 -0.01 2.76 16 27 H 0.02 1.06 6.53 -2.39 -0.02 1.04 16 28 H 0.06 2.57 6.74 -2.39 -0.02 2.56 16 29 H 0.09 2.98 6.09 -2.39 -0.01 2.96 16 30 H -0.04 -2.49 6.23 -2.39 -0.01 -2.50 16 31 H 0.00 0.29 5.94 -2.39 -0.01 0.28 16 32 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 33 H 0.03 1.24 6.25 -2.38 -0.01 1.22 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 36 H 0.03 1.02 7.22 -2.39 -0.02 1.00 16 37 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.10 1.37 8.11 -2.38 -0.02 1.35 16 39 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 40 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 41 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.06 1.87 6.25 -2.38 -0.01 1.86 16 Total: -1.00 -73.69 321.63 3.42 -70.27 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.99 Total: 12.68 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 4.41 Total: -17.27 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -3.74 Total: -87.12 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.28 Total: -26.61 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -73.69 3.42 -70.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172615790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.462 kcal (2) G-P(sol) polarization free energy of solvation -73.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds