Wall clock time and date at job start Mon Mar 30 2020 01:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00133 * 2 1 4 4 O 1.20826 * 119.99667 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00049 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.62768 * 299.99652 * 5 3 2 7 7 C 1.50469 * 109.63091 * 60.38140 * 5 3 2 8 8 C 1.53815 * 112.64441 * 213.69726 * 7 5 3 9 9 C 1.54066 * 112.88968 * 318.57822 * 8 7 5 10 10 C 1.50471 * 112.49600 * 318.13007 * 9 8 7 11 11 H 1.08997 * 109.62907 * 334.43685 * 10 9 8 12 12 N 1.46902 * 109.62769 * 213.85587 * 10 9 8 13 13 C 1.46907 * 110.99441 * 73.74458 * 12 10 9 14 14 C 1.46896 * 111.00238 * 309.79344 * 12 10 9 15 15 C 1.50699 * 109.47133 * 195.78226 * 14 12 10 16 16 H 1.08003 * 119.99851 * 359.97438 * 15 14 12 17 17 C 1.37872 * 120.00471 * 179.97438 * 15 14 12 18 18 N 1.31518 * 120.00820 * 180.02562 * 17 15 14 19 19 Si 1.86809 * 119.99627 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46776 * 90.00259 * 19 17 15 21 21 H 1.48501 * 109.47123 * 209.99967 * 19 17 15 22 22 H 1.48494 * 109.47183 * 330.00385 * 19 17 15 23 23 C 1.54237 * 108.52572 * 94.15150 * 10 9 8 24 24 C 1.45543 * 112.40367 * 280.01342 * 23 10 9 25 25 H 1.08995 * 109.47607 * 60.00157 * 1 2 3 26 26 H 1.09009 * 109.46980 * 299.99748 * 1 2 3 27 27 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 28 28 H 1.08992 * 108.88134 * 334.64139 * 7 5 3 29 29 H 1.09003 * 108.87718 * 93.08808 * 7 5 3 30 30 H 1.08999 * 108.90016 * 197.61101 * 8 7 5 31 31 H 1.08998 * 108.56839 * 79.31507 * 8 7 5 32 32 H 1.09002 * 108.87886 * 197.34967 * 9 8 7 33 33 H 1.09007 * 108.87563 * 78.90311 * 9 8 7 34 34 H 1.09000 * 109.47224 * 64.24794 * 13 12 10 35 35 H 1.09004 * 109.46859 * 184.24086 * 13 12 10 36 36 H 1.08995 * 109.47621 * 304.24096 * 13 12 10 37 37 H 1.08994 * 109.46790 * 315.77882 * 14 12 10 38 38 H 1.08993 * 109.47426 * 75.78229 * 14 12 10 39 39 H 0.96998 * 120.00210 * 180.02562 * 18 17 15 40 40 H 1.09001 * 108.89949 * 159.26415 * 23 10 9 41 41 H 1.08999 * 108.90062 * 40.76529 * 23 10 9 42 42 H 1.09006 * 108.89838 * 301.18008 * 24 23 10 43 43 H 1.09002 * 108.82242 * 182.63931 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9591 0.7812 0.8883 7 6 4.1073 0.6021 -1.2330 8 6 5.4569 -0.0926 -0.9844 9 6 6.4076 0.7422 -0.1052 10 6 6.3943 2.2024 -0.4684 11 1 6.0974 2.3177 -1.5108 12 7 7.7327 2.7733 -0.2666 13 6 8.6581 2.3298 -1.3178 14 6 8.2517 2.4400 1.0666 15 6 9.4191 3.3365 1.3898 16 1 9.7434 4.0793 0.6760 17 6 10.0732 3.2085 2.5967 18 7 11.0918 3.9912 2.8790 19 14 9.5119 1.9242 3.8317 20 1 10.2369 0.6516 3.5865 21 1 9.8009 2.4013 5.2080 22 1 8.0518 1.6987 3.6823 23 6 5.3803 2.9247 0.4421 24 6 4.0078 2.7527 -0.0103 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.3857 -0.1395 -1.5755 29 1 4.2388 1.3505 -2.0144 30 1 5.9393 -0.2804 -1.9436 31 1 5.2706 -1.0472 -0.4924 32 1 7.4217 0.3594 -0.2202 33 1 6.1085 0.6355 0.9376 34 1 8.3247 2.7146 -2.2815 35 1 9.6587 2.7054 -1.1031 36 1 8.6779 1.2405 -1.3486 37 1 7.4664 2.5844 1.8086 38 1 8.5776 1.4000 1.0801 39 1 11.5522 3.9008 3.7280 40 1 5.6158 3.9888 0.4583 41 1 5.4706 2.5297 1.4540 42 1 3.9192 3.1408 -1.0250 43 1 3.3478 3.3225 0.6439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172785374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:10 Heat of formation + Delta-G solvation = -91.200870 kcal Electronic energy + Delta-G solvation = -21827.930383 eV Core-core repulsion = 18679.960459 eV Total energy + Delta-G solvation = -3147.969925 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.92302 -39.16753 -36.75601 -35.76068 -32.53854 -32.40937 -30.91671 -28.11736 -27.86738 -25.54983 -25.13645 -23.16299 -21.88250 -21.23288 -19.91576 -18.53863 -17.65965 -17.06823 -16.82785 -16.41446 -15.07916 -14.83952 -14.61983 -14.47302 -14.09811 -13.83608 -13.56447 -13.37191 -13.12068 -12.73863 -12.38055 -12.26276 -12.13463 -11.88569 -11.73270 -11.33305 -11.07236 -11.05695 -10.99106 -10.76567 -10.58990 -10.50262 -10.36977 -10.28251 -10.03100 -9.85217 -9.76988 -9.24116 -8.54658 -7.30096 -6.02714 -3.99029 2.07490 2.53946 3.28173 3.36384 3.37399 4.43307 4.45864 4.54912 4.65220 4.85086 4.88597 4.92645 5.09047 5.15810 5.20102 5.27202 5.28314 5.30516 5.42333 5.56683 5.73728 5.82866 5.94756 5.99059 6.05009 6.11769 6.16342 6.18102 6.23305 6.27649 6.40772 6.45109 6.62066 6.68049 6.73673 6.93273 7.02076 7.60730 7.67226 7.96161 8.11598 8.70700 9.07672 9.59732 11.10770 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.004631 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.104442 B = 6044.654587 C = 6366.712409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.466 3.534 4 O -0.507 6.507 5 C -0.079 4.079 6 H 0.112 0.888 7 C -0.111 4.111 8 C -0.108 4.108 9 C -0.156 4.156 10 C 0.087 3.913 11 H 0.074 0.926 12 N -0.525 5.525 13 C 0.034 3.966 14 C 0.160 3.840 15 C -0.506 4.506 16 H 0.080 0.920 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.873 3.127 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.267 1.267 23 C -0.114 4.114 24 C -0.096 4.096 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.012 0.988 37 H 0.029 0.971 38 H -0.015 1.015 39 H 0.263 0.737 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.966 -10.095 -7.634 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.394 6.394 5 C -0.098 4.098 6 H 0.130 0.870 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.195 4.195 10 C -0.023 4.023 11 H 0.092 0.908 12 N -0.248 5.248 13 C -0.115 4.115 14 C 0.034 3.966 15 C -0.545 4.545 16 H 0.098 0.902 17 C -0.134 4.134 18 N -0.541 5.541 19 Si 0.700 3.300 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.151 4.151 24 C -0.134 4.134 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.031 0.969 37 H 0.047 0.953 38 H 0.003 0.997 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.092 -9.229 -7.518 21.656 hybrid contribution -0.328 -1.592 0.926 1.871 sum -18.419 -10.821 -6.592 22.357 Atomic orbital electron populations 1.23247 0.76670 1.03537 1.02493 1.86520 1.23158 1.33779 1.84180 1.24004 0.92301 0.81086 0.71708 1.90650 1.67244 1.36357 1.45136 1.20960 0.85863 1.00412 1.02538 0.87000 1.21282 0.97455 1.00142 0.95948 1.21788 0.94128 0.98438 1.00303 1.22181 0.99776 0.97493 1.00009 1.21425 0.91190 0.90749 0.98893 0.90829 1.62201 1.00519 1.57855 1.04178 1.22264 0.98486 0.96731 0.94011 1.20200 0.95927 0.94376 0.86101 1.21088 1.12053 1.18546 1.02775 0.90229 1.24898 0.94820 0.95801 0.97861 1.69896 1.21467 1.38969 1.23817 0.86903 0.79632 0.82245 0.81214 1.20417 1.21217 1.19181 1.20496 0.92489 1.02891 0.99254 1.20403 0.97536 0.92195 1.03239 0.91980 0.91965 0.88221 0.91364 0.91077 0.91890 0.92242 0.91400 0.92086 0.93335 0.90348 0.96912 0.95275 0.99738 0.92744 0.89908 0.92114 0.91378 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.94 10.09 -39.26 -0.40 -4.33 16 3 C 0.47 5.80 7.13 36.00 0.26 6.06 16 4 O -0.51 -7.53 15.35 -18.75 -0.29 -7.82 16 5 C -0.08 -0.92 2.30 -92.39 -0.21 -1.13 16 6 H 0.11 1.29 7.00 -51.93 -0.36 0.93 16 7 C -0.11 -1.16 4.86 -27.57 -0.13 -1.29 16 8 C -0.11 -1.21 5.84 -25.75 -0.15 -1.36 16 9 C -0.16 -2.26 3.71 -27.44 -0.10 -2.36 16 10 C 0.09 1.38 1.87 -68.33 -0.13 1.25 16 11 H 0.07 1.08 6.89 -51.93 -0.36 0.72 16 12 N -0.53 -10.59 4.64 -237.08 -1.10 -11.69 16 13 C 0.03 0.62 9.26 60.07 0.56 1.17 16 14 C 0.16 3.77 2.80 -4.98 -0.01 3.75 16 15 C -0.51 -14.28 9.03 -34.44 -0.31 -14.59 16 16 H 0.08 2.46 7.79 -52.48 -0.41 2.05 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 19 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 23 C -0.11 -1.73 4.14 -29.60 -0.12 -1.86 16 24 C -0.10 -1.24 4.29 -29.60 -0.13 -1.36 16 25 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 26 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.65 7.34 -51.93 -0.38 0.27 16 29 H 0.07 0.74 6.66 -51.93 -0.35 0.39 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.10 5.40 -51.93 -0.28 0.82 16 33 H 0.06 0.92 6.64 -51.93 -0.34 0.58 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.63 7.12 -51.93 -0.37 1.26 16 36 H 0.01 0.22 6.59 -51.93 -0.34 -0.13 16 37 H 0.03 0.70 5.56 -51.93 -0.29 0.41 16 38 H -0.02 -0.35 6.37 -51.93 -0.33 -0.69 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 41 H 0.06 0.98 6.57 -51.93 -0.34 0.64 16 42 H 0.07 0.85 7.49 -51.93 -0.39 0.46 16 43 H 0.07 1.00 7.32 -51.93 -0.38 0.62 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -31.58 323.50 -7.37 -38.95 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.05 Total: -1.30 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 0.48 Total: -8.54 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.33 Total: -38.59 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.68 Total: -12.15 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.58 -7.37 -38.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172785374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.251 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds