Wall clock time and date at job start Mon Mar 30 2020 01:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00133 * 2 1 4 4 O 1.20826 * 119.99667 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00049 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.62768 * 299.99652 * 5 3 2 7 7 C 1.50469 * 109.63091 * 60.38140 * 5 3 2 8 8 C 1.53815 * 112.64441 * 213.69726 * 7 5 3 9 9 C 1.54066 * 112.88968 * 318.57822 * 8 7 5 10 10 C 1.50471 * 112.49600 * 318.13007 * 9 8 7 11 11 H 1.08997 * 109.62907 * 334.43685 * 10 9 8 12 12 N 1.46902 * 109.62769 * 213.85587 * 10 9 8 13 13 C 1.46907 * 110.99441 * 73.74458 * 12 10 9 14 14 C 1.46896 * 111.00238 * 309.79344 * 12 10 9 15 15 C 1.50699 * 109.47133 * 195.78226 * 14 12 10 16 16 H 1.08003 * 119.99851 * 359.97438 * 15 14 12 17 17 C 1.37872 * 120.00471 * 179.97438 * 15 14 12 18 18 N 1.31518 * 120.00820 * 180.02562 * 17 15 14 19 19 Si 1.86809 * 119.99627 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46776 * 90.00259 * 19 17 15 21 21 H 1.48501 * 109.47123 * 209.99967 * 19 17 15 22 22 H 1.48494 * 109.47183 * 330.00385 * 19 17 15 23 23 C 1.54237 * 108.52572 * 94.15150 * 10 9 8 24 24 C 1.45543 * 112.40367 * 280.01342 * 23 10 9 25 25 H 1.08995 * 109.47607 * 60.00157 * 1 2 3 26 26 H 1.09009 * 109.46980 * 299.99748 * 1 2 3 27 27 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 28 28 H 1.08992 * 108.88134 * 334.64139 * 7 5 3 29 29 H 1.09003 * 108.87718 * 93.08808 * 7 5 3 30 30 H 1.08999 * 108.90016 * 197.61101 * 8 7 5 31 31 H 1.08998 * 108.56839 * 79.31507 * 8 7 5 32 32 H 1.09002 * 108.87886 * 197.34967 * 9 8 7 33 33 H 1.09007 * 108.87563 * 78.90311 * 9 8 7 34 34 H 1.09000 * 109.47224 * 64.24794 * 13 12 10 35 35 H 1.09004 * 109.46859 * 184.24086 * 13 12 10 36 36 H 1.08995 * 109.47621 * 304.24096 * 13 12 10 37 37 H 1.08994 * 109.46790 * 315.77882 * 14 12 10 38 38 H 1.08993 * 109.47426 * 75.78229 * 14 12 10 39 39 H 0.96998 * 120.00210 * 180.02562 * 18 17 15 40 40 H 1.09001 * 108.89949 * 159.26415 * 23 10 9 41 41 H 1.08999 * 108.90062 * 40.76529 * 23 10 9 42 42 H 1.09006 * 108.89838 * 301.18008 * 24 23 10 43 43 H 1.09002 * 108.82242 * 182.63931 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9591 0.7812 0.8883 7 6 4.1073 0.6021 -1.2330 8 6 5.4569 -0.0926 -0.9844 9 6 6.4076 0.7422 -0.1052 10 6 6.3943 2.2024 -0.4684 11 1 6.0974 2.3177 -1.5108 12 7 7.7327 2.7733 -0.2666 13 6 8.6581 2.3298 -1.3178 14 6 8.2517 2.4400 1.0666 15 6 9.4191 3.3365 1.3898 16 1 9.7434 4.0793 0.6760 17 6 10.0732 3.2085 2.5967 18 7 11.0918 3.9912 2.8790 19 14 9.5119 1.9242 3.8317 20 1 10.2369 0.6516 3.5865 21 1 9.8009 2.4013 5.2080 22 1 8.0518 1.6987 3.6823 23 6 5.3803 2.9247 0.4421 24 6 4.0078 2.7527 -0.0103 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.3857 -0.1395 -1.5755 29 1 4.2388 1.3505 -2.0144 30 1 5.9393 -0.2804 -1.9436 31 1 5.2706 -1.0472 -0.4924 32 1 7.4217 0.3594 -0.2202 33 1 6.1085 0.6355 0.9376 34 1 8.3247 2.7146 -2.2815 35 1 9.6587 2.7054 -1.1031 36 1 8.6779 1.2405 -1.3486 37 1 7.4664 2.5844 1.8086 38 1 8.5776 1.4000 1.0801 39 1 11.5522 3.9008 3.7280 40 1 5.6158 3.9888 0.4583 41 1 5.4706 2.5297 1.4540 42 1 3.9192 3.1408 -1.0250 43 1 3.3478 3.3225 0.6439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172785374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:09 Heat of formation + Delta-G solvation = -111.534886 kcal Electronic energy + Delta-G solvation = -21828.812133 eV Core-core repulsion = 18679.960459 eV Total energy + Delta-G solvation = -3148.851674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.87897 -40.35742 -37.75435 -37.02894 -34.63544 -33.44210 -32.19835 -29.90448 -28.75979 -26.82451 -26.17199 -24.81254 -22.94833 -22.60817 -20.93758 -19.85611 -19.04443 -18.54753 -17.89809 -17.30649 -16.48586 -16.41345 -15.91779 -15.71840 -15.32518 -15.14560 -14.74936 -14.53469 -14.33745 -14.17184 -13.86904 -13.38345 -13.14530 -13.08010 -12.89127 -12.88320 -12.74540 -12.42267 -12.10595 -11.89993 -11.81054 -11.73941 -11.68709 -11.51176 -11.46423 -11.32508 -11.20626 -10.98814 -10.74553 -8.87145 -8.25824 -6.27783 1.14003 1.33918 1.36209 1.46627 1.72705 2.35595 3.07749 3.31204 3.54613 3.63077 3.75009 4.07633 4.16529 4.22126 4.28300 4.32132 4.33389 4.43545 4.46606 4.51237 4.59242 4.70791 4.73345 4.90404 4.92714 4.94123 4.98491 5.04347 5.13923 5.21299 5.22678 5.25427 5.30444 5.37416 5.41331 5.45313 5.51346 5.63672 6.06759 6.49559 6.70497 6.75814 6.80361 7.35782 8.91345 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.004631 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.104442 B = 6044.654587 C = 6366.712409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.470 3.530 4 O -0.537 6.537 5 C -0.075 4.075 6 H 0.116 0.884 7 C -0.106 4.106 8 C -0.099 4.099 9 C -0.152 4.152 10 C 0.088 3.912 11 H 0.093 0.907 12 N -0.547 5.547 13 C 0.038 3.962 14 C 0.176 3.824 15 C -0.513 4.513 16 H 0.034 0.966 17 C 0.006 3.994 18 N -0.951 5.951 19 Si 0.943 3.057 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.247 1.247 23 C -0.105 4.105 24 C -0.089 4.089 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.132 0.868 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.029 0.971 37 H 0.029 0.971 38 H -0.012 1.012 39 H 0.265 0.735 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.203 -12.770 -8.142 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.315 3.685 4 O -0.426 6.426 5 C -0.094 4.094 6 H 0.134 0.866 7 C -0.144 4.144 8 C -0.137 4.137 9 C -0.191 4.191 10 C -0.021 4.021 11 H 0.111 0.889 12 N -0.270 5.270 13 C -0.111 4.111 14 C 0.049 3.951 15 C -0.552 4.552 16 H 0.052 0.948 17 C -0.191 4.191 18 N -0.593 5.593 19 Si 0.766 3.234 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.170 1.170 23 C -0.143 4.143 24 C -0.127 4.127 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.150 0.850 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.006 0.994 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.351 -11.926 -8.053 24.925 hybrid contribution 0.352 -0.690 1.005 1.269 sum -19.999 -12.616 -7.049 24.674 Atomic orbital electron populations 1.23550 0.74952 1.05678 1.02457 1.86503 1.24832 1.32714 1.83635 1.24055 0.92456 0.81106 0.70899 1.90645 1.67906 1.37388 1.46683 1.20899 0.85700 0.99312 1.03514 0.86597 1.21261 0.97349 1.00534 0.95231 1.21715 0.93537 0.98214 1.00249 1.22103 0.99927 0.96563 1.00550 1.21522 0.88646 0.91765 1.00126 0.88880 1.62074 1.02563 1.59409 1.02941 1.22208 0.96551 0.97695 0.94600 1.19868 0.93932 0.93085 0.88182 1.21374 1.13615 1.18212 1.01992 0.94762 1.25839 0.94783 0.98243 1.00196 1.70060 1.23180 1.41309 1.24723 0.85777 0.80295 0.79278 0.78020 1.19195 1.20929 1.17046 1.20414 0.93799 1.01347 0.98778 1.20259 0.95660 0.93502 1.03258 0.91860 0.92249 0.85031 0.89778 0.90680 0.90647 0.90862 0.92938 0.92729 0.90618 0.93799 0.95293 0.95327 0.99403 0.92580 0.92086 0.93182 0.90707 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.86 10.09 -51.41 -0.52 -7.38 16 3 C 0.47 10.67 7.13 71.23 0.51 11.18 16 4 O -0.54 -15.20 15.35 21.96 0.34 -14.86 16 5 C -0.08 -1.56 2.30 -11.94 -0.03 -1.59 16 6 H 0.12 2.36 7.00 -2.38 -0.02 2.34 16 7 C -0.11 -1.84 4.86 30.05 0.15 -1.69 16 8 C -0.10 -1.83 5.84 31.23 0.18 -1.65 16 9 C -0.15 -4.04 3.71 30.14 0.11 -3.92 16 10 C 0.09 2.63 1.87 44.52 0.08 2.72 16 11 H 0.09 2.45 6.89 -2.39 -0.02 2.44 16 12 N -0.55 -21.87 4.64 -903.99 -4.19 -26.06 16 13 C 0.04 1.37 9.26 127.69 1.18 2.55 16 14 C 0.18 8.28 2.80 85.56 0.24 8.52 16 15 C -0.51 -29.90 9.03 25.60 0.23 -29.67 16 16 H 0.03 2.24 7.79 -2.91 -0.02 2.22 16 17 C 0.01 0.36 5.47 84.65 0.46 0.82 16 18 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 19 Si 0.94 44.13 27.47 68.60 1.88 46.01 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 22 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 23 C -0.11 -3.12 4.14 28.74 0.12 -3.01 16 24 C -0.09 -2.16 4.29 28.74 0.12 -2.04 16 25 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 26 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 1.25 7.34 -2.39 -0.02 1.23 16 29 H 0.07 1.27 6.66 -2.39 -0.02 1.25 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.57 5.40 -2.39 -0.01 1.56 16 33 H 0.05 1.51 6.64 -2.38 -0.02 1.49 16 34 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 35 H 0.04 1.87 7.12 -2.38 -0.02 1.85 16 36 H 0.03 0.95 6.59 -2.39 -0.02 0.93 16 37 H 0.03 1.35 5.56 -2.39 -0.01 1.34 16 38 H -0.01 -0.54 6.37 -2.39 -0.02 -0.55 16 39 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.06 2.06 8.12 -2.39 -0.02 2.04 16 41 H 0.05 1.57 6.57 -2.39 -0.02 1.55 16 42 H 0.07 1.72 7.49 -2.38 -0.02 1.70 16 43 H 0.07 1.72 7.32 -2.39 -0.02 1.71 16 Total: -1.00 -70.21 323.50 3.30 -66.91 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.93 Total: 11.53 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 4.56 Total: -16.23 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -3.89 Total: -85.99 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.18 Total: -22.24 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Total: -70.21 3.30 -66.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172785374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.625 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds