Wall clock time and date at job start Mon Mar 30 2020 01:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 117.00048 * 2 1 4 4 O 1.20829 * 119.99883 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00118 * 180.02562 * 3 2 1 6 6 H 1.09000 * 108.87576 * 61.39101 * 5 3 2 7 7 C 1.54247 * 108.89594 * 302.88280 * 5 3 2 8 8 C 1.50469 * 108.52813 * 159.26127 * 7 5 3 9 9 C 1.54071 * 112.49600 * 94.15048 * 8 7 5 10 10 C 1.54062 * 112.81785 * 318.28447 * 9 8 7 11 11 H 1.09006 * 108.87699 * 79.06355 * 10 9 8 12 12 N 1.46897 * 108.87750 * 197.50698 * 10 9 8 13 13 C 1.46903 * 111.00109 * 196.52936 * 12 10 9 14 14 C 1.46901 * 111.00290 * 72.57677 * 12 10 9 15 15 C 1.50698 * 109.47458 * 189.99725 * 14 12 10 16 16 H 1.07995 * 119.99687 * 0.02562 * 15 14 12 17 17 C 1.37875 * 120.00080 * 179.97438 * 15 14 12 18 18 N 1.31524 * 119.99970 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00103 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46934 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47185 * 120.00263 * 19 17 15 22 22 H 1.48499 * 109.47207 * 240.00041 * 19 17 15 23 23 C 1.50473 * 112.49503 * 318.28670 * 10 9 8 24 24 C 1.45537 * 108.89984 * 180.02562 * 5 3 2 25 25 H 1.09002 * 109.46869 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47070 * 59.99940 * 1 2 3 27 27 H 1.08993 * 109.46911 * 299.99829 * 1 2 3 28 28 H 1.09000 * 109.62650 * 278.97837 * 7 5 3 29 29 H 1.09004 * 109.62732 * 39.55438 * 7 5 3 30 30 H 1.09000 * 108.88107 * 333.37755 * 8 7 5 31 31 H 1.08997 * 108.80315 * 214.87337 * 8 7 5 32 32 H 1.09001 * 108.81364 * 197.42024 * 9 8 7 33 33 H 1.09004 * 108.72669 * 79.08656 * 9 8 7 34 34 H 1.09003 * 109.46576 * 54.07417 * 13 12 10 35 35 H 1.08997 * 109.47403 * 174.06933 * 13 12 10 36 36 H 1.08998 * 109.47317 * 294.07397 * 13 12 10 37 37 H 1.09004 * 109.46890 * 310.00543 * 14 12 10 38 38 H 1.09001 * 109.46615 * 69.99906 * 14 12 10 39 39 H 0.96997 * 119.99746 * 179.97438 * 18 17 15 40 40 H 1.08993 * 109.62936 * 334.43856 * 23 10 9 41 41 H 1.09004 * 109.78447 * 213.95982 * 23 10 9 42 42 H 1.09003 * 108.89399 * 303.44377 * 24 5 3 43 43 H 1.09004 * 108.89122 * 61.93014 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9440 0.8003 -0.9063 7 6 4.1071 0.5095 1.2246 8 6 5.5451 0.1491 0.9667 9 6 6.5257 1.1888 1.5421 10 6 6.0622 2.6396 1.3103 11 1 5.2983 2.8878 2.0472 12 7 7.2080 3.5400 1.4958 13 6 6.7629 4.9284 1.6754 14 6 8.1507 3.4303 0.3745 15 6 9.4186 4.1729 0.7096 16 1 9.5146 4.6756 1.6606 17 6 10.4563 4.2095 -0.1975 18 7 10.3395 3.5968 -1.3554 19 14 12.0281 5.1293 0.2181 20 1 11.9082 5.7276 1.5720 21 1 13.1748 4.1860 0.1941 22 1 12.2511 6.2051 -0.7810 23 6 5.4959 2.8499 -0.0678 24 6 3.9650 2.6746 0.0002 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8899 28 1 4.0412 1.1421 2.1098 29 1 3.5235 -0.3986 1.3759 30 1 5.7023 0.0738 -0.1093 31 1 5.7514 -0.8197 1.4214 32 1 7.4995 1.0515 1.0719 33 1 6.6266 1.0190 2.6141 34 1 6.0393 4.9755 2.4892 35 1 7.6206 5.5569 1.9150 36 1 6.2984 5.2830 0.7553 37 1 8.3812 2.3802 0.1950 38 1 7.7026 3.8620 -0.5204 39 1 11.0694 3.6230 -1.9937 40 1 5.9187 2.1156 -0.7534 41 1 5.7344 3.8551 -0.4154 42 1 3.5147 3.1703 -0.8599 43 1 3.5953 3.1463 0.9106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172785376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:13 Heat of formation + Delta-G solvation = -93.630299 kcal Electronic energy + Delta-G solvation = -21732.534141 eV Core-core repulsion = 18584.458868 eV Total energy + Delta-G solvation = -3148.075273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.94788 -39.00727 -36.72837 -35.74349 -32.60392 -32.23533 -30.52692 -28.01759 -27.24523 -25.60470 -24.75934 -23.39451 -22.21285 -20.85004 -20.06923 -18.24027 -17.69242 -16.95005 -16.53605 -16.36060 -15.31263 -14.76513 -14.48013 -14.39792 -13.81355 -13.63961 -13.41526 -13.15782 -13.09497 -12.68893 -12.35270 -12.02302 -11.95622 -11.77723 -11.45550 -11.05890 -11.02400 -10.97811 -10.86025 -10.72604 -10.54279 -10.46463 -10.35587 -10.19617 -10.07340 -9.96385 -9.51505 -9.12707 -8.39025 -7.11514 -5.99976 -4.00247 2.10778 2.59124 3.32249 3.39847 3.44814 4.44901 4.56087 4.58929 4.76309 4.88676 4.95235 4.97770 5.24664 5.32957 5.36431 5.36832 5.39320 5.45065 5.52345 5.65429 5.88138 5.99042 6.04034 6.08241 6.19891 6.21100 6.25288 6.30331 6.31774 6.37383 6.52314 6.58540 6.79469 6.83370 6.86535 7.36231 7.43516 7.64530 7.85613 8.16374 8.27566 8.62971 9.08238 9.63753 11.10752 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039139 B = 0.003928 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.225903 B = 7126.961398 C = 7251.940526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.461 3.539 4 O -0.509 6.509 5 C -0.068 4.068 6 H 0.107 0.893 7 C -0.107 4.107 8 C -0.116 4.116 9 C -0.110 4.110 10 C 0.087 3.913 11 H 0.062 0.938 12 N -0.541 5.541 13 C 0.039 3.961 14 C 0.190 3.810 15 C -0.506 4.506 16 H 0.062 0.938 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.895 3.105 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.286 1.286 23 C -0.140 4.140 24 C -0.110 4.110 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.014 0.986 37 H 0.033 0.967 38 H -0.006 1.006 39 H 0.259 0.741 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.401 -8.108 2.932 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.305 3.695 4 O -0.396 6.396 5 C -0.087 4.087 6 H 0.125 0.875 7 C -0.144 4.144 8 C -0.154 4.154 9 C -0.148 4.148 10 C -0.022 4.022 11 H 0.080 0.920 12 N -0.264 5.264 13 C -0.110 4.110 14 C 0.065 3.935 15 C -0.544 4.544 16 H 0.080 0.920 17 C -0.147 4.147 18 N -0.539 5.539 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.179 4.179 24 C -0.148 4.148 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.032 0.968 37 H 0.051 0.949 38 H 0.012 0.988 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.272 -7.980 3.212 18.406 hybrid contribution 0.203 0.826 -0.771 1.148 sum -16.069 -7.154 2.441 17.758 Atomic orbital electron populations 1.23240 0.76804 1.03504 1.02435 1.86526 1.23065 1.33789 1.84141 1.24237 0.92531 0.81063 0.71701 1.90656 1.67299 1.36424 1.45260 1.20155 0.85934 1.00108 1.02532 0.87499 1.21409 0.97147 0.99808 0.96085 1.21323 0.93442 0.98957 1.01679 1.21934 0.99299 0.92586 1.00939 1.21454 0.92806 0.93630 0.94335 0.91986 1.62302 1.12929 1.05094 1.46070 1.22189 0.99621 0.91118 0.98075 1.19767 0.89875 0.97447 0.86413 1.21254 0.99046 1.32109 1.02019 0.91982 1.24978 0.98716 0.95919 0.95041 1.69968 1.32596 1.43800 1.07523 0.86489 0.83332 0.79521 0.78362 1.19713 1.21074 1.21198 1.22028 0.92768 1.03104 1.00022 1.20406 0.97454 0.93560 1.03368 0.88221 0.92058 0.92008 0.90791 0.90830 0.91870 0.91825 0.90582 0.92227 0.93950 0.91056 0.96792 0.94941 0.98800 0.93093 0.91202 0.90696 0.91664 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.00 10.03 -39.25 -0.39 -4.40 16 3 C 0.46 5.95 7.22 36.00 0.26 6.21 16 4 O -0.51 -7.88 15.53 -18.75 -0.29 -8.18 16 5 C -0.07 -0.83 2.13 -94.64 -0.20 -1.03 16 6 H 0.11 1.20 7.46 -51.93 -0.39 0.81 16 7 C -0.11 -1.20 4.97 -27.34 -0.14 -1.34 16 8 C -0.12 -1.42 5.31 -27.44 -0.15 -1.57 16 9 C -0.11 -1.72 5.39 -25.62 -0.14 -1.86 16 10 C 0.09 1.48 1.67 -68.42 -0.11 1.37 16 11 H 0.06 1.00 6.34 -51.93 -0.33 0.67 16 12 N -0.54 -11.42 4.64 -237.19 -1.10 -12.52 16 13 C 0.04 0.75 9.05 60.07 0.54 1.30 16 14 C 0.19 4.80 3.85 -4.98 -0.02 4.78 16 15 C -0.51 -14.10 8.54 -34.44 -0.29 -14.40 16 16 H 0.06 1.73 7.10 -52.49 -0.37 1.36 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 19 Si 0.89 21.65 29.54 -169.99 -5.02 16.62 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.14 -2.30 3.86 -27.35 -0.11 -2.40 16 24 C -0.11 -1.53 3.84 -29.60 -0.11 -1.64 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.07 0.86 6.98 -51.93 -0.36 0.50 16 29 H 0.07 0.73 7.55 -51.93 -0.39 0.34 16 30 H 0.06 0.78 6.63 -51.93 -0.34 0.44 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.41 6.19 -51.93 -0.32 1.08 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.71 7.94 -51.93 -0.41 0.30 16 35 H 0.07 1.49 6.91 -51.93 -0.36 1.13 16 36 H 0.01 0.27 6.74 -51.93 -0.35 -0.08 16 37 H 0.03 0.87 6.25 -51.93 -0.32 0.55 16 38 H -0.01 -0.15 6.68 -51.93 -0.35 -0.50 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 40 H 0.07 1.17 6.98 -51.93 -0.36 0.81 16 41 H 0.07 1.39 5.39 -51.93 -0.28 1.11 16 42 H 0.06 0.93 7.87 -51.93 -0.41 0.52 16 43 H 0.07 0.97 7.39 -51.93 -0.38 0.59 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -30.89 325.58 -7.64 -38.53 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.98 Total: -1.44 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 0.50 Total: -7.80 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.36 Total: -38.25 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.68 Total: -12.57 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.89 -7.64 -38.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172785376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.096 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds