Wall clock time and date at job start Mon Mar 30 2020 01:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 117.00048 * 2 1 4 4 O 1.20829 * 119.99883 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00118 * 180.02562 * 3 2 1 6 6 H 1.09000 * 108.87576 * 61.39101 * 5 3 2 7 7 C 1.54247 * 108.89594 * 302.88280 * 5 3 2 8 8 C 1.50469 * 108.52813 * 159.26127 * 7 5 3 9 9 C 1.54071 * 112.49600 * 94.15048 * 8 7 5 10 10 C 1.54062 * 112.81785 * 318.28447 * 9 8 7 11 11 H 1.09006 * 108.87699 * 79.06355 * 10 9 8 12 12 N 1.46897 * 108.87750 * 197.50698 * 10 9 8 13 13 C 1.46903 * 111.00109 * 196.52936 * 12 10 9 14 14 C 1.46901 * 111.00290 * 72.57677 * 12 10 9 15 15 C 1.50698 * 109.47458 * 189.99725 * 14 12 10 16 16 H 1.07995 * 119.99687 * 0.02562 * 15 14 12 17 17 C 1.37875 * 120.00080 * 179.97438 * 15 14 12 18 18 N 1.31524 * 119.99970 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00103 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46934 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47185 * 120.00263 * 19 17 15 22 22 H 1.48499 * 109.47207 * 240.00041 * 19 17 15 23 23 C 1.50473 * 112.49503 * 318.28670 * 10 9 8 24 24 C 1.45537 * 108.89984 * 180.02562 * 5 3 2 25 25 H 1.09002 * 109.46869 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47070 * 59.99940 * 1 2 3 27 27 H 1.08993 * 109.46911 * 299.99829 * 1 2 3 28 28 H 1.09000 * 109.62650 * 278.97837 * 7 5 3 29 29 H 1.09004 * 109.62732 * 39.55438 * 7 5 3 30 30 H 1.09000 * 108.88107 * 333.37755 * 8 7 5 31 31 H 1.08997 * 108.80315 * 214.87337 * 8 7 5 32 32 H 1.09001 * 108.81364 * 197.42024 * 9 8 7 33 33 H 1.09004 * 108.72669 * 79.08656 * 9 8 7 34 34 H 1.09003 * 109.46576 * 54.07417 * 13 12 10 35 35 H 1.08997 * 109.47403 * 174.06933 * 13 12 10 36 36 H 1.08998 * 109.47317 * 294.07397 * 13 12 10 37 37 H 1.09004 * 109.46890 * 310.00543 * 14 12 10 38 38 H 1.09001 * 109.46615 * 69.99906 * 14 12 10 39 39 H 0.96997 * 119.99746 * 179.97438 * 18 17 15 40 40 H 1.08993 * 109.62936 * 334.43856 * 23 10 9 41 41 H 1.09004 * 109.78447 * 213.95982 * 23 10 9 42 42 H 1.09003 * 108.89399 * 303.44377 * 24 5 3 43 43 H 1.09004 * 108.89122 * 61.93014 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9440 0.8003 -0.9063 7 6 4.1071 0.5095 1.2246 8 6 5.5451 0.1491 0.9667 9 6 6.5257 1.1888 1.5421 10 6 6.0622 2.6396 1.3103 11 1 5.2983 2.8878 2.0472 12 7 7.2080 3.5400 1.4958 13 6 6.7629 4.9284 1.6754 14 6 8.1507 3.4303 0.3745 15 6 9.4186 4.1729 0.7096 16 1 9.5146 4.6756 1.6606 17 6 10.4563 4.2095 -0.1975 18 7 10.3395 3.5968 -1.3554 19 14 12.0281 5.1293 0.2181 20 1 11.9082 5.7276 1.5720 21 1 13.1748 4.1860 0.1941 22 1 12.2511 6.2051 -0.7810 23 6 5.4959 2.8499 -0.0678 24 6 3.9650 2.6746 0.0002 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8899 28 1 4.0412 1.1421 2.1098 29 1 3.5235 -0.3986 1.3759 30 1 5.7023 0.0738 -0.1093 31 1 5.7514 -0.8197 1.4214 32 1 7.4995 1.0515 1.0719 33 1 6.6266 1.0190 2.6141 34 1 6.0393 4.9755 2.4892 35 1 7.6206 5.5569 1.9150 36 1 6.2984 5.2830 0.7553 37 1 8.3812 2.3802 0.1950 38 1 7.7026 3.8620 -0.5204 39 1 11.0694 3.6230 -1.9937 40 1 5.9187 2.1156 -0.7534 41 1 5.7344 3.8551 -0.4154 42 1 3.5147 3.1703 -0.8599 43 1 3.5953 3.1463 0.9106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172785376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:13 Heat of formation + Delta-G solvation = -112.542863 kcal Electronic energy + Delta-G solvation = -21733.354251 eV Core-core repulsion = 18584.458868 eV Total energy + Delta-G solvation = -3148.895383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.96674 -40.28662 -37.79340 -37.08036 -34.66679 -33.39423 -31.91485 -29.25627 -28.80143 -26.91218 -26.07229 -25.08625 -23.41437 -22.29517 -21.09911 -19.65235 -18.77924 -18.40304 -17.88539 -17.46882 -16.71870 -16.53003 -15.91550 -15.66305 -15.15998 -14.96025 -14.61542 -14.38642 -14.19524 -14.02101 -13.93293 -13.34996 -13.11386 -13.00393 -12.90466 -12.81674 -12.69012 -12.38507 -12.20436 -12.16352 -11.88427 -11.75079 -11.70341 -11.61994 -11.31796 -11.21370 -11.12370 -10.99361 -10.54269 -8.85990 -8.16733 -6.25325 1.12264 1.40829 1.41748 1.54851 1.72264 2.42313 3.15453 3.36129 3.56610 3.69349 3.71263 4.11504 4.15141 4.27071 4.29322 4.33644 4.35631 4.36877 4.44397 4.57444 4.65026 4.72746 4.76929 4.82334 4.93208 4.99050 5.08755 5.10095 5.16246 5.21769 5.25452 5.32964 5.37466 5.37920 5.43833 5.49375 5.61826 5.71495 6.14640 6.43804 6.69433 6.77441 6.92428 7.43872 8.93806 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039139 B = 0.003928 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.225903 B = 7126.961398 C = 7251.940526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.540 6.540 5 C -0.070 4.070 6 H 0.118 0.882 7 C -0.099 4.099 8 C -0.108 4.108 9 C -0.106 4.106 10 C 0.086 3.914 11 H 0.080 0.920 12 N -0.551 5.551 13 C 0.041 3.959 14 C 0.211 3.789 15 C -0.524 4.524 16 H 0.058 0.942 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.964 3.036 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.280 1.280 23 C -0.131 4.131 24 C -0.095 4.095 25 H 0.133 0.867 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.010 0.990 37 H 0.011 0.989 38 H -0.033 1.033 39 H 0.263 0.737 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.368 -9.083 3.987 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.430 6.430 5 C -0.088 4.088 6 H 0.136 0.864 7 C -0.136 4.136 8 C -0.146 4.146 9 C -0.144 4.144 10 C -0.022 4.022 11 H 0.098 0.902 12 N -0.274 5.274 13 C -0.107 4.107 14 C 0.085 3.915 15 C -0.562 4.562 16 H 0.076 0.924 17 C -0.195 4.195 18 N -0.573 5.573 19 Si 0.789 3.211 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.206 1.206 23 C -0.170 4.170 24 C -0.134 4.134 25 H 0.151 0.849 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.028 0.972 37 H 0.029 0.971 38 H -0.015 1.015 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.258 -8.974 4.281 19.918 hybrid contribution 0.428 1.095 -1.094 1.606 sum -16.830 -7.879 3.187 18.854 Atomic orbital electron populations 1.23555 0.74997 1.05732 1.02387 1.86506 1.24791 1.32539 1.83536 1.24184 0.92518 0.81137 0.70876 1.90650 1.67952 1.37506 1.46890 1.20119 0.86015 0.98960 1.03749 0.86388 1.21368 0.96329 1.00577 0.95325 1.21260 0.93244 0.98608 1.01461 1.21907 0.98636 0.92618 1.01252 1.21609 0.91753 0.93763 0.95104 0.90155 1.62230 1.14458 1.06621 1.44086 1.22177 0.99548 0.89998 0.99011 1.19345 0.90098 0.95373 0.86717 1.21585 1.00334 1.32389 1.01929 0.92385 1.25843 1.02143 0.96720 0.94844 1.70085 1.33764 1.44974 1.08484 0.85418 0.79047 0.78269 0.78381 1.18968 1.20401 1.20596 1.21849 0.94754 1.01131 0.99268 1.20220 0.95026 0.95081 1.03031 0.84890 0.92256 0.91998 0.90798 0.88591 0.92129 0.89651 0.94039 0.91543 0.90736 0.92791 0.97184 0.97083 1.01540 0.92846 0.92142 0.93413 0.92277 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -7.04 10.03 -51.41 -0.52 -7.55 16 3 C 0.47 11.19 7.22 71.23 0.51 11.70 16 4 O -0.54 -16.09 15.53 21.95 0.34 -15.75 16 5 C -0.07 -1.56 2.13 -13.40 -0.03 -1.59 16 6 H 0.12 2.44 7.46 -2.39 -0.02 2.42 16 7 C -0.10 -1.94 4.97 30.20 0.15 -1.79 16 8 C -0.11 -2.43 5.31 30.14 0.16 -2.27 16 9 C -0.11 -3.28 5.39 31.32 0.17 -3.11 16 10 C 0.09 2.92 1.67 44.46 0.07 3.00 16 11 H 0.08 2.46 6.34 -2.38 -0.02 2.44 16 12 N -0.55 -23.64 4.64 -904.32 -4.20 -27.83 16 13 C 0.04 1.61 9.05 127.69 1.16 2.77 16 14 C 0.21 11.07 3.85 85.56 0.33 11.40 16 15 C -0.52 -29.92 8.54 25.60 0.22 -29.70 16 16 H 0.06 3.29 7.10 -2.91 -0.02 3.27 16 17 C 0.00 0.13 5.46 84.65 0.46 0.60 16 18 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 19 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 C -0.13 -4.37 3.86 30.20 0.12 -4.25 16 24 C -0.10 -2.60 3.84 28.73 0.11 -2.48 16 25 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 27 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 28 H 0.07 1.50 6.98 -2.39 -0.02 1.48 16 29 H 0.10 1.53 7.55 -2.38 -0.02 1.52 16 30 H 0.06 1.42 6.63 -2.39 -0.02 1.40 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.57 6.19 -2.39 -0.01 1.56 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 2.42 7.94 -2.39 -0.02 2.40 16 35 H 0.05 2.27 6.91 -2.39 -0.02 2.26 16 36 H 0.01 0.39 6.74 -2.39 -0.02 0.37 16 37 H 0.01 0.63 6.25 -2.39 -0.01 0.61 16 38 H -0.03 -1.88 6.68 -2.39 -0.02 -1.90 16 39 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.06 2.10 6.98 -2.39 -0.02 2.08 16 41 H 0.05 1.85 5.39 -2.39 -0.01 1.84 16 42 H 0.06 1.68 7.87 -2.39 -0.02 1.66 16 43 H 0.07 1.83 7.39 -2.38 -0.02 1.81 16 Total: -1.00 -67.56 325.58 3.56 -64.00 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.99 Total: 10.33 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 4.63 Total: -14.18 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -3.91 Total: -83.62 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.17 Total: -23.30 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -67.56 3.56 -64.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172785376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.538 kcal (2) G-P(sol) polarization free energy of solvation -67.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds