Wall clock time and date at job start Mon Mar 30 2020 01:42:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45206 * 1
3 3 C 1.34229 * 117.00048 * 2 1
4 4 O 1.20829 * 119.99883 * 359.97438 * 3 2 1
5 5 C 1.50692 * 120.00118 * 180.02562 * 3 2 1
6 6 H 1.09000 * 108.87576 * 61.39101 * 5 3 2
7 7 C 1.54247 * 108.89594 * 302.88280 * 5 3 2
8 8 C 1.50469 * 108.52813 * 159.26127 * 7 5 3
9 9 C 1.54071 * 112.49600 * 94.15048 * 8 7 5
10 10 C 1.54062 * 112.81785 * 318.28447 * 9 8 7
11 11 H 1.09006 * 108.87699 * 79.06355 * 10 9 8
12 12 N 1.46897 * 108.87750 * 197.50698 * 10 9 8
13 13 C 1.46903 * 111.00109 * 196.52936 * 12 10 9
14 14 C 1.46901 * 111.00290 * 72.57677 * 12 10 9
15 15 C 1.50698 * 109.47458 * 189.99725 * 14 12 10
16 16 H 1.07995 * 119.99687 * 0.02562 * 15 14 12
17 17 C 1.37875 * 120.00080 * 179.97438 * 15 14 12
18 18 N 1.31524 * 119.99970 * 0.02562 * 17 15 14
19 19 Si 1.86800 * 120.00103 * 180.02562 * 17 15 14
20 20 H 1.48504 * 109.46934 * 0.02562 * 19 17 15
21 21 H 1.48501 * 109.47185 * 120.00263 * 19 17 15
22 22 H 1.48499 * 109.47207 * 240.00041 * 19 17 15
23 23 C 1.50473 * 112.49503 * 318.28670 * 10 9 8
24 24 C 1.45537 * 108.89984 * 180.02562 * 5 3 2
25 25 H 1.09002 * 109.46869 * 179.97438 * 1 2 3
26 26 H 1.09002 * 109.47070 * 59.99940 * 1 2 3
27 27 H 1.08993 * 109.46911 * 299.99829 * 1 2 3
28 28 H 1.09000 * 109.62650 * 278.97837 * 7 5 3
29 29 H 1.09004 * 109.62732 * 39.55438 * 7 5 3
30 30 H 1.09000 * 108.88107 * 333.37755 * 8 7 5
31 31 H 1.08997 * 108.80315 * 214.87337 * 8 7 5
32 32 H 1.09001 * 108.81364 * 197.42024 * 9 8 7
33 33 H 1.09004 * 108.72669 * 79.08656 * 9 8 7
34 34 H 1.09003 * 109.46576 * 54.07417 * 13 12 10
35 35 H 1.08997 * 109.47403 * 174.06933 * 13 12 10
36 36 H 1.08998 * 109.47317 * 294.07397 * 13 12 10
37 37 H 1.09004 * 109.46890 * 310.00543 * 14 12 10
38 38 H 1.09001 * 109.46615 * 69.99906 * 14 12 10
39 39 H 0.96997 * 119.99746 * 179.97438 * 18 17 15
40 40 H 1.08993 * 109.62936 * 334.43856 * 23 10 9
41 41 H 1.09004 * 109.78447 * 213.95982 * 23 10 9
42 42 H 1.09003 * 108.89399 * 303.44377 * 24 5 3
43 43 H 1.09004 * 108.89122 * 61.93014 * 24 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4521 0.0000 0.0000
3 6 2.0615 1.1960 0.0000
4 8 1.4034 2.2093 -0.0005
5 6 3.5663 1.2749 -0.0006
6 1 3.9440 0.8003 -0.9063
7 6 4.1071 0.5095 1.2246
8 6 5.5451 0.1491 0.9667
9 6 6.5257 1.1888 1.5421
10 6 6.0622 2.6396 1.3103
11 1 5.2983 2.8878 2.0472
12 7 7.2080 3.5400 1.4958
13 6 6.7629 4.9284 1.6754
14 6 8.1507 3.4303 0.3745
15 6 9.4186 4.1729 0.7096
16 1 9.5146 4.6756 1.6606
17 6 10.4563 4.2095 -0.1975
18 7 10.3395 3.5968 -1.3554
19 14 12.0281 5.1293 0.2181
20 1 11.9082 5.7276 1.5720
21 1 13.1748 4.1860 0.1941
22 1 12.2511 6.2051 -0.7810
23 6 5.4959 2.8499 -0.0678
24 6 3.9650 2.6746 0.0002
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3633 0.5138 0.8899
28 1 4.0412 1.1421 2.1098
29 1 3.5235 -0.3986 1.3759
30 1 5.7023 0.0738 -0.1093
31 1 5.7514 -0.8197 1.4214
32 1 7.4995 1.0515 1.0719
33 1 6.6266 1.0190 2.6141
34 1 6.0393 4.9755 2.4892
35 1 7.6206 5.5569 1.9150
36 1 6.2984 5.2830 0.7553
37 1 8.3812 2.3802 0.1950
38 1 7.7026 3.8620 -0.5204
39 1 11.0694 3.6230 -1.9937
40 1 5.9187 2.1156 -0.7534
41 1 5.7344 3.8551 -0.4154
42 1 3.5147 3.1703 -0.8599
43 1 3.5953 3.1463 0.9106
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001172785376.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:42:13
Heat of formation + Delta-G solvation = -112.542863 kcal
Electronic energy + Delta-G solvation = -21733.354251 eV
Core-core repulsion = 18584.458868 eV
Total energy + Delta-G solvation = -3148.895383 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.96674 -40.28662 -37.79340 -37.08036 -34.66679 -33.39423 -31.91485 -29.25627
-28.80143 -26.91218 -26.07229 -25.08625 -23.41437 -22.29517 -21.09911 -19.65235
-18.77924 -18.40304 -17.88539 -17.46882 -16.71870 -16.53003 -15.91550 -15.66305
-15.15998 -14.96025 -14.61542 -14.38642 -14.19524 -14.02101 -13.93293 -13.34996
-13.11386 -13.00393 -12.90466 -12.81674 -12.69012 -12.38507 -12.20436 -12.16352
-11.88427 -11.75079 -11.70341 -11.61994 -11.31796 -11.21370 -11.12370 -10.99361
-10.54269 -8.85990 -8.16733 -6.25325 1.12264 1.40829 1.41748 1.54851
1.72264 2.42313 3.15453 3.36129 3.56610 3.69349 3.71263 4.11504
4.15141 4.27071 4.29322 4.33644 4.35631 4.36877 4.44397 4.57444
4.65026 4.72746 4.76929 4.82334 4.93208 4.99050 5.08755 5.10095
5.16246 5.21769 5.25452 5.32964 5.37466 5.37920 5.43833 5.49375
5.61826 5.71495 6.14640 6.43804 6.69433 6.77441 6.92428 7.43872
8.93806
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.039139 B = 0.003928 C = 0.003860
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 715.225903 B = 7126.961398 C = 7251.940526
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.358 6.358
3 C 0.468 3.532
4 O -0.540 6.540
5 C -0.070 4.070
6 H 0.118 0.882
7 C -0.099 4.099
8 C -0.108 4.108
9 C -0.106 4.106
10 C 0.086 3.914
11 H 0.080 0.920
12 N -0.551 5.551
13 C 0.041 3.959
14 C 0.211 3.789
15 C -0.524 4.524
16 H 0.058 0.942
17 C 0.002 3.998
18 N -0.932 5.932
19 Si 0.964 3.036
20 H -0.266 1.266
21 H -0.278 1.278
22 H -0.280 1.280
23 C -0.131 4.131
24 C -0.095 4.095
25 H 0.133 0.867
26 H 0.059 0.941
27 H 0.061 0.939
28 H 0.073 0.927
29 H 0.096 0.904
30 H 0.060 0.940
31 H 0.085 0.915
32 H 0.041 0.959
33 H 0.066 0.934
34 H 0.074 0.926
35 H 0.053 0.947
36 H 0.010 0.990
37 H 0.011 0.989
38 H -0.033 1.033
39 H 0.263 0.737
40 H 0.060 0.940
41 H 0.047 0.953
42 H 0.058 0.942
43 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.368 -9.083 3.987 20.001
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.274 6.274
3 C 0.313 3.687
4 O -0.430 6.430
5 C -0.088 4.088
6 H 0.136 0.864
7 C -0.136 4.136
8 C -0.146 4.146
9 C -0.144 4.144
10 C -0.022 4.022
11 H 0.098 0.902
12 N -0.274 5.274
13 C -0.107 4.107
14 C 0.085 3.915
15 C -0.562 4.562
16 H 0.076 0.924
17 C -0.195 4.195
18 N -0.573 5.573
19 Si 0.789 3.211
20 H -0.190 1.190
21 H -0.204 1.204
22 H -0.206 1.206
23 C -0.170 4.170
24 C -0.134 4.134
25 H 0.151 0.849
26 H 0.077 0.923
27 H 0.080 0.920
28 H 0.092 0.908
29 H 0.114 0.886
30 H 0.079 0.921
31 H 0.103 0.897
32 H 0.060 0.940
33 H 0.085 0.915
34 H 0.093 0.907
35 H 0.072 0.928
36 H 0.028 0.972
37 H 0.029 0.971
38 H -0.015 1.015
39 H 0.072 0.928
40 H 0.079 0.921
41 H 0.066 0.934
42 H 0.077 0.923
43 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -17.258 -8.974 4.281 19.918
hybrid contribution 0.428 1.095 -1.094 1.606
sum -16.830 -7.879 3.187 18.854
Atomic orbital electron populations
1.23555 0.74997 1.05732 1.02387 1.86506 1.24791 1.32539 1.83536
1.24184 0.92518 0.81137 0.70876 1.90650 1.67952 1.37506 1.46890
1.20119 0.86015 0.98960 1.03749 0.86388 1.21368 0.96329 1.00577
0.95325 1.21260 0.93244 0.98608 1.01461 1.21907 0.98636 0.92618
1.01252 1.21609 0.91753 0.93763 0.95104 0.90155 1.62230 1.14458
1.06621 1.44086 1.22177 0.99548 0.89998 0.99011 1.19345 0.90098
0.95373 0.86717 1.21585 1.00334 1.32389 1.01929 0.92385 1.25843
1.02143 0.96720 0.94844 1.70085 1.33764 1.44974 1.08484 0.85418
0.79047 0.78269 0.78381 1.18968 1.20401 1.20596 1.21849 0.94754
1.01131 0.99268 1.20220 0.95026 0.95081 1.03031 0.84890 0.92256
0.91998 0.90798 0.88591 0.92129 0.89651 0.94039 0.91543 0.90736
0.92791 0.97184 0.97083 1.01540 0.92846 0.92142 0.93413 0.92277
0.91555
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.36 10.56 113.37 1.20 1.56 16
2 O -0.36 -7.04 10.03 -51.41 -0.52 -7.55 16
3 C 0.47 11.19 7.22 71.23 0.51 11.70 16
4 O -0.54 -16.09 15.53 21.95 0.34 -15.75 16
5 C -0.07 -1.56 2.13 -13.40 -0.03 -1.59 16
6 H 0.12 2.44 7.46 -2.39 -0.02 2.42 16
7 C -0.10 -1.94 4.97 30.20 0.15 -1.79 16
8 C -0.11 -2.43 5.31 30.14 0.16 -2.27 16
9 C -0.11 -3.28 5.39 31.32 0.17 -3.11 16
10 C 0.09 2.92 1.67 44.46 0.07 3.00 16
11 H 0.08 2.46 6.34 -2.38 -0.02 2.44 16
12 N -0.55 -23.64 4.64 -904.32 -4.20 -27.83 16
13 C 0.04 1.61 9.05 127.69 1.16 2.77 16
14 C 0.21 11.07 3.85 85.56 0.33 11.40 16
15 C -0.52 -29.92 8.54 25.60 0.22 -29.70 16
16 H 0.06 3.29 7.10 -2.91 -0.02 3.27 16
17 C 0.00 0.13 5.46 84.65 0.46 0.60 16
18 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16
19 Si 0.96 44.74 29.54 68.60 2.03 46.77 16
20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16
21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16
22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16
23 C -0.13 -4.37 3.86 30.20 0.12 -4.25 16
24 C -0.10 -2.60 3.84 28.73 0.11 -2.48 16
25 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16
26 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16
27 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16
28 H 0.07 1.50 6.98 -2.39 -0.02 1.48 16
29 H 0.10 1.53 7.55 -2.38 -0.02 1.52 16
30 H 0.06 1.42 6.63 -2.39 -0.02 1.40 16
31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16
32 H 0.04 1.57 6.19 -2.39 -0.01 1.56 16
33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16
34 H 0.07 2.42 7.94 -2.39 -0.02 2.40 16
35 H 0.05 2.27 6.91 -2.39 -0.02 2.26 16
36 H 0.01 0.39 6.74 -2.39 -0.02 0.37 16
37 H 0.01 0.63 6.25 -2.39 -0.01 0.61 16
38 H -0.03 -1.88 6.68 -2.39 -0.02 -1.90 16
39 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16
40 H 0.06 2.10 6.98 -2.39 -0.02 2.08 16
41 H 0.05 1.85 5.39 -2.39 -0.01 1.84 16
42 H 0.06 1.68 7.87 -2.39 -0.02 1.66 16
43 H 0.07 1.83 7.39 -2.38 -0.02 1.81 16
Total: -1.00 -67.56 325.58 3.56 -64.00
By element:
Atomic # 1 Polarization: 9.34 SS G_CDS: 0.99 Total: 10.33 kcal
Atomic # 6 Polarization: -18.81 SS G_CDS: 4.63 Total: -14.18 kcal
Atomic # 7 Polarization: -79.71 SS G_CDS: -3.91 Total: -83.62 kcal
Atomic # 8 Polarization: -23.13 SS G_CDS: -0.17 Total: -23.30 kcal
Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal
Total: -67.56 3.56 -64.00 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172785376.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.538 kcal
(2) G-P(sol) polarization free energy of solvation -67.560 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.098 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.005 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.543 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds