Wall clock time and date at job start Mon Mar 30 2020 00:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34229 * 116.99971 * 2 1 4 4 O 1.20833 * 119.99791 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99898 * 180.02562 * 3 2 1 6 6 H 1.08996 * 108.79345 * 61.45248 * 5 3 2 7 7 C 1.54243 * 108.89690 * 302.88930 * 5 3 2 8 8 C 1.50472 * 108.51916 * 159.25039 * 7 5 3 9 9 C 1.54069 * 112.49280 * 94.15952 * 8 7 5 10 10 C 1.54066 * 112.81555 * 318.28077 * 9 8 7 11 11 H 1.09007 * 108.87736 * 79.06497 * 10 9 8 12 12 N 1.46904 * 108.87710 * 197.60476 * 10 9 8 13 13 C 1.46897 * 110.99909 * 274.79408 * 12 10 9 14 14 H 1.09003 * 109.47307 * 35.14109 * 13 12 10 15 15 C 1.53004 * 109.46655 * 155.13454 * 13 12 10 16 16 C 1.50696 * 109.47238 * 275.13159 * 13 12 10 17 17 H 1.07998 * 119.99990 * 0.02562 * 16 13 12 18 18 C 1.37881 * 120.00005 * 180.02562 * 16 13 12 19 19 N 1.31512 * 119.99919 * 180.02562 * 18 16 13 20 20 Si 1.86794 * 119.99926 * 0.02562 * 18 16 13 21 21 H 1.48496 * 109.47445 * 90.00027 * 20 18 16 22 22 H 1.48504 * 109.47082 * 209.99896 * 20 18 16 23 23 H 1.48495 * 109.47485 * 329.99706 * 20 18 16 24 24 C 1.50474 * 112.50078 * 318.28469 * 10 9 8 25 25 C 1.45549 * 108.89255 * 180.02562 * 5 3 2 26 26 H 1.08994 * 109.46813 * 299.99301 * 1 2 3 27 27 H 1.08994 * 109.47022 * 59.99325 * 1 2 3 28 28 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.62730 * 278.96433 * 7 5 3 30 30 H 1.09003 * 109.62439 * 39.35284 * 7 5 3 31 31 H 1.09001 * 108.87527 * 214.92960 * 8 7 5 32 32 H 1.08991 * 108.88140 * 333.38336 * 8 7 5 33 33 H 1.08999 * 108.81542 * 79.14327 * 9 8 7 34 34 H 1.09000 * 108.81311 * 197.42456 * 9 8 7 35 35 H 1.00897 * 111.00040 * 150.83972 * 12 10 9 36 36 H 1.09000 * 109.46837 * 65.71665 * 15 13 12 37 37 H 1.09008 * 109.46738 * 185.70550 * 15 13 12 38 38 H 1.08992 * 109.47238 * 305.70775 * 15 13 12 39 39 H 0.97001 * 120.00218 * 180.02562 * 19 18 16 40 40 H 1.08993 * 109.62705 * 334.44167 * 24 10 9 41 41 H 1.08999 * 109.63034 * 213.85798 * 24 10 9 42 42 H 1.09000 * 108.89448 * 303.44037 * 25 5 3 43 43 H 1.08998 * 108.89548 * 61.93723 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9424 0.8010 -0.9072 7 6 4.1072 0.5094 1.2245 8 6 5.5450 0.1488 0.9662 9 6 6.5259 1.1883 1.5416 10 6 6.0624 2.6392 1.3102 11 1 5.2986 2.8873 2.0472 12 7 7.2089 3.5393 1.4933 13 6 7.3842 3.8870 2.9098 14 1 7.1192 3.0304 3.5297 15 6 8.8439 4.2685 3.1643 16 6 6.4929 5.0520 3.2551 17 1 5.8593 5.4902 2.4982 18 6 6.4864 5.5587 4.5375 19 7 5.7083 6.5751 4.8389 20 14 7.5828 4.8013 5.8465 21 1 8.8993 5.4885 5.8478 22 1 6.9429 4.9550 7.1777 23 1 7.7780 3.3585 5.5547 24 6 5.4959 2.8499 -0.0679 25 6 3.9649 2.6747 0.0002 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 4.0415 1.1419 2.1096 30 1 3.5213 -0.3969 1.3777 31 1 5.7524 -0.8205 1.4195 32 1 5.7020 0.0737 -0.1098 33 1 6.6288 1.0189 2.6134 34 1 7.4995 1.0510 1.0712 35 1 7.1117 4.3686 0.9269 36 1 9.0797 5.1845 2.6227 37 1 8.9968 4.4281 4.2318 38 1 9.4947 3.4648 2.8202 39 1 5.7039 6.9318 5.7410 40 1 5.9186 2.1158 -0.7536 41 1 5.7344 3.8563 -0.4119 42 1 3.5147 3.1703 -0.8599 43 1 3.5954 3.1464 0.9106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172797164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:49 Heat of formation + Delta-G solvation = -97.041045 kcal Electronic energy + Delta-G solvation = -21784.554192 eV Core-core repulsion = 18636.331018 eV Total energy + Delta-G solvation = -3148.223174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.86628 -38.71683 -36.59739 -35.61038 -32.80183 -32.16574 -31.14561 -28.46118 -27.40436 -25.22075 -24.90727 -23.51714 -21.96876 -20.30573 -19.75675 -18.74313 -17.63762 -16.89817 -16.85595 -16.46461 -15.34653 -15.01804 -14.51558 -14.30147 -13.77829 -13.62846 -13.34048 -13.05910 -12.97818 -12.55821 -12.30783 -12.15619 -12.04324 -11.99181 -11.55726 -11.21938 -11.03187 -10.93094 -10.91293 -10.70849 -10.53399 -10.35789 -10.22594 -10.05883 -9.93273 -9.84074 -9.46866 -9.17908 -8.57547 -7.32275 -6.09971 -4.10552 2.17903 2.64753 3.27467 3.36930 3.39468 4.39172 4.59835 4.61970 4.77291 4.95204 5.01691 5.03403 5.24897 5.29310 5.30419 5.34452 5.40496 5.49057 5.54580 5.66602 5.89514 6.02591 6.08839 6.13691 6.22455 6.27699 6.32657 6.37485 6.44489 6.47878 6.54108 6.62894 6.71604 6.77225 6.89894 7.07962 7.30143 7.61320 7.71731 8.10420 8.42935 8.53595 8.93070 9.53862 11.03220 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.004918 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.846071 B = 5692.330463 C = 6153.121103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.459 3.541 4 O -0.504 6.504 5 C -0.064 4.064 6 H 0.104 0.896 7 C -0.112 4.112 8 C -0.113 4.113 9 C -0.107 4.107 10 C 0.088 3.912 11 H 0.053 0.947 12 N -0.683 5.683 13 C 0.176 3.824 14 H 0.031 0.969 15 C -0.138 4.138 16 C -0.543 4.543 17 H 0.072 0.928 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.891 3.109 21 H -0.279 1.279 22 H -0.299 1.299 23 H -0.267 1.267 24 C -0.107 4.107 25 C -0.116 4.116 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.335 0.665 36 H 0.049 0.951 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.263 0.737 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 -15.081 -10.184 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.302 3.698 4 O -0.391 6.391 5 C -0.083 4.083 6 H 0.122 0.878 7 C -0.150 4.150 8 C -0.151 4.151 9 C -0.145 4.145 10 C -0.022 4.022 11 H 0.071 0.929 12 N -0.314 5.314 13 C 0.067 3.933 14 H 0.049 0.951 15 C -0.196 4.196 16 C -0.582 4.582 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.227 1.227 23 H -0.192 1.192 24 C -0.145 4.145 25 C -0.154 4.154 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.153 0.847 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.427 -15.165 -10.018 18.707 hybrid contribution -0.521 0.550 1.031 1.280 sum -4.948 -14.615 -8.987 17.856 Atomic orbital electron populations 1.23237 0.76783 1.03437 1.02534 1.86509 1.23091 1.33828 1.84256 1.24202 0.92531 0.81110 0.71948 1.90683 1.67223 1.36364 1.44847 1.20106 0.86107 0.99984 1.02131 0.87780 1.21433 0.96901 1.00055 0.96587 1.21293 0.93752 0.98838 1.01184 1.21941 0.98442 0.93411 1.00694 1.21206 0.92728 0.92738 0.95539 0.92945 1.60862 1.40743 1.19812 1.09954 1.19586 0.92368 0.95538 0.85814 0.95101 1.22044 0.98617 1.00138 0.98822 1.21745 1.24131 1.15284 0.97062 0.90989 1.25004 0.95120 0.94443 0.98489 1.69923 1.38857 1.24554 1.20333 0.86798 0.80187 0.80347 0.80456 1.20576 1.22684 1.19220 1.21499 0.93060 1.02108 0.97862 1.20451 0.97056 0.93699 1.04234 0.91898 0.92078 0.88276 0.90346 0.90819 0.92034 0.92056 0.92680 0.91490 0.84714 0.93139 0.94712 0.94567 0.92705 0.91566 0.91021 0.91442 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.24 10.03 -39.25 -0.39 -4.63 16 3 C 0.46 6.28 7.22 36.00 0.26 6.54 16 4 O -0.50 -8.47 15.53 -18.76 -0.29 -8.76 16 5 C -0.06 -0.78 2.13 -94.64 -0.20 -0.99 16 6 H 0.10 1.05 7.47 -51.93 -0.39 0.66 16 7 C -0.11 -1.35 4.97 -27.34 -0.14 -1.48 16 8 C -0.11 -1.29 5.31 -27.44 -0.15 -1.44 16 9 C -0.11 -1.57 5.23 -25.62 -0.13 -1.71 16 10 C 0.09 1.51 1.83 -68.42 -0.13 1.38 16 11 H 0.05 1.06 6.06 -51.92 -0.31 0.75 16 12 N -0.68 -13.42 6.02 -101.69 -0.61 -14.03 16 13 C 0.18 4.10 1.97 -68.87 -0.14 3.96 16 14 H 0.03 0.75 6.37 -51.93 -0.33 0.42 16 15 C -0.14 -3.05 8.92 37.16 0.33 -2.72 16 16 C -0.54 -14.98 8.83 -34.44 -0.30 -15.29 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 19 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 20 Si 0.89 22.16 24.31 -169.99 -4.13 18.03 16 21 H -0.28 -6.78 6.92 56.52 0.39 -6.39 16 22 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 23 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 24 C -0.11 -1.53 5.27 -27.34 -0.14 -1.68 16 25 C -0.12 -1.65 3.84 -29.59 -0.11 -1.77 16 26 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.10 6.98 -51.93 -0.36 0.74 16 30 H 0.07 0.79 7.54 -51.93 -0.39 0.40 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.62 6.63 -51.93 -0.34 0.28 16 33 H 0.05 0.89 7.72 -51.93 -0.40 0.49 16 34 H 0.07 0.99 8.12 -51.93 -0.42 0.56 16 35 H 0.33 6.63 7.45 -39.29 -0.29 6.33 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.03 0.79 3.44 -51.92 -0.18 0.61 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.07 0.82 6.98 -51.93 -0.36 0.46 16 41 H 0.07 1.06 7.25 -51.93 -0.38 0.68 16 42 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 43 H 0.08 1.31 7.39 -51.93 -0.38 0.93 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -31.40 324.30 -6.74 -38.14 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.09 Total: 5.01 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 0.12 Total: -11.83 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.16 Total: -40.84 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.68 Total: -13.39 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.13 Total: 18.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.40 -6.74 -38.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172797164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.900 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds