Wall clock time and date at job start Mon Mar 30 2020 00:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34229 * 116.99971 * 2 1 4 4 O 1.20833 * 119.99791 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99898 * 180.02562 * 3 2 1 6 6 H 1.08996 * 108.79345 * 61.45248 * 5 3 2 7 7 C 1.54243 * 108.89690 * 302.88930 * 5 3 2 8 8 C 1.50472 * 108.51916 * 159.25039 * 7 5 3 9 9 C 1.54069 * 112.49280 * 94.15952 * 8 7 5 10 10 C 1.54066 * 112.81555 * 318.28077 * 9 8 7 11 11 H 1.09007 * 108.87736 * 79.06497 * 10 9 8 12 12 N 1.46904 * 108.87710 * 197.60476 * 10 9 8 13 13 C 1.46897 * 110.99909 * 274.79408 * 12 10 9 14 14 H 1.09003 * 109.47307 * 35.14109 * 13 12 10 15 15 C 1.53004 * 109.46655 * 155.13454 * 13 12 10 16 16 C 1.50696 * 109.47238 * 275.13159 * 13 12 10 17 17 H 1.07998 * 119.99990 * 0.02562 * 16 13 12 18 18 C 1.37881 * 120.00005 * 180.02562 * 16 13 12 19 19 N 1.31512 * 119.99919 * 180.02562 * 18 16 13 20 20 Si 1.86794 * 119.99926 * 0.02562 * 18 16 13 21 21 H 1.48496 * 109.47445 * 90.00027 * 20 18 16 22 22 H 1.48504 * 109.47082 * 209.99896 * 20 18 16 23 23 H 1.48495 * 109.47485 * 329.99706 * 20 18 16 24 24 C 1.50474 * 112.50078 * 318.28469 * 10 9 8 25 25 C 1.45549 * 108.89255 * 180.02562 * 5 3 2 26 26 H 1.08994 * 109.46813 * 299.99301 * 1 2 3 27 27 H 1.08994 * 109.47022 * 59.99325 * 1 2 3 28 28 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.62730 * 278.96433 * 7 5 3 30 30 H 1.09003 * 109.62439 * 39.35284 * 7 5 3 31 31 H 1.09001 * 108.87527 * 214.92960 * 8 7 5 32 32 H 1.08991 * 108.88140 * 333.38336 * 8 7 5 33 33 H 1.08999 * 108.81542 * 79.14327 * 9 8 7 34 34 H 1.09000 * 108.81311 * 197.42456 * 9 8 7 35 35 H 1.00897 * 111.00040 * 150.83972 * 12 10 9 36 36 H 1.09000 * 109.46837 * 65.71665 * 15 13 12 37 37 H 1.09008 * 109.46738 * 185.70550 * 15 13 12 38 38 H 1.08992 * 109.47238 * 305.70775 * 15 13 12 39 39 H 0.97001 * 120.00218 * 180.02562 * 19 18 16 40 40 H 1.08993 * 109.62705 * 334.44167 * 24 10 9 41 41 H 1.08999 * 109.63034 * 213.85798 * 24 10 9 42 42 H 1.09000 * 108.89448 * 303.44037 * 25 5 3 43 43 H 1.08998 * 108.89548 * 61.93723 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9424 0.8010 -0.9072 7 6 4.1072 0.5094 1.2245 8 6 5.5450 0.1488 0.9662 9 6 6.5259 1.1883 1.5416 10 6 6.0624 2.6392 1.3102 11 1 5.2986 2.8873 2.0472 12 7 7.2089 3.5393 1.4933 13 6 7.3842 3.8870 2.9098 14 1 7.1192 3.0304 3.5297 15 6 8.8439 4.2685 3.1643 16 6 6.4929 5.0520 3.2551 17 1 5.8593 5.4902 2.4982 18 6 6.4864 5.5587 4.5375 19 7 5.7083 6.5751 4.8389 20 14 7.5828 4.8013 5.8465 21 1 8.8993 5.4885 5.8478 22 1 6.9429 4.9550 7.1777 23 1 7.7780 3.3585 5.5547 24 6 5.4959 2.8499 -0.0679 25 6 3.9649 2.6747 0.0002 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 4.0415 1.1419 2.1096 30 1 3.5213 -0.3969 1.3777 31 1 5.7524 -0.8205 1.4195 32 1 5.7020 0.0737 -0.1098 33 1 6.6288 1.0189 2.6134 34 1 7.4995 1.0510 1.0712 35 1 7.1117 4.3686 0.9269 36 1 9.0797 5.1845 2.6227 37 1 8.9968 4.4281 4.2318 38 1 9.4947 3.4648 2.8202 39 1 5.7039 6.9318 5.7410 40 1 5.9186 2.1158 -0.7536 41 1 5.7344 3.8563 -0.4119 42 1 3.5147 3.1703 -0.8599 43 1 3.5954 3.1464 0.9106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172797164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:49 Heat of formation + Delta-G solvation = -118.365948 kcal Electronic energy + Delta-G solvation = -21785.478909 eV Core-core repulsion = 18636.331018 eV Total energy + Delta-G solvation = -3149.147891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.93399 -39.92369 -37.74193 -37.13899 -34.63578 -33.27870 -32.88963 -29.75532 -28.45799 -27.03022 -26.31043 -24.76535 -23.06385 -21.93899 -21.03589 -19.97642 -19.02376 -18.64852 -17.89270 -17.48216 -16.96993 -16.69138 -15.75443 -15.47031 -15.14726 -15.00085 -14.65868 -14.52159 -14.08552 -14.07666 -13.89117 -13.62300 -13.35402 -13.14707 -12.91279 -12.77321 -12.60705 -12.28492 -12.02158 -11.99912 -11.88589 -11.74002 -11.56297 -11.47259 -11.32264 -11.20152 -11.14587 -11.01047 -10.75166 -9.04293 -8.34003 -6.38898 1.11476 1.28687 1.33173 1.43970 1.72254 2.28929 3.02304 3.44279 3.58722 3.69928 3.79475 4.13674 4.22880 4.27902 4.30420 4.35179 4.36673 4.42745 4.46936 4.60242 4.68727 4.69711 4.83839 4.86527 4.96028 5.00846 5.05533 5.06355 5.14282 5.25513 5.26871 5.33272 5.37431 5.40431 5.47850 5.51086 5.61055 5.66950 6.12737 6.44320 6.66731 6.68700 6.83845 7.30158 8.82807 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.004918 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.846071 B = 5692.330463 C = 6153.121103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.461 3.539 4 O -0.546 6.546 5 C -0.063 4.063 6 H 0.143 0.857 7 C -0.108 4.108 8 C -0.105 4.105 9 C -0.101 4.101 10 C 0.088 3.912 11 H 0.008 0.992 12 N -0.672 5.672 13 C 0.182 3.818 14 H 0.024 0.976 15 C -0.135 4.135 16 C -0.542 4.542 17 H 0.029 0.971 18 C 0.012 3.988 19 N -0.950 5.950 20 Si 0.954 3.046 21 H -0.264 1.264 22 H -0.301 1.301 23 H -0.248 1.248 24 C -0.100 4.100 25 C -0.107 4.107 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.136 0.864 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.332 0.668 36 H 0.046 0.954 37 H 0.029 0.971 38 H 0.065 0.935 39 H 0.264 0.736 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.083 -18.364 -11.308 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.306 3.694 4 O -0.436 6.436 5 C -0.081 4.081 6 H 0.160 0.840 7 C -0.146 4.146 8 C -0.143 4.143 9 C -0.140 4.140 10 C -0.022 4.022 11 H 0.027 0.973 12 N -0.302 5.302 13 C 0.071 3.929 14 H 0.042 0.958 15 C -0.192 4.192 16 C -0.581 4.581 17 H 0.047 0.953 18 C -0.186 4.186 19 N -0.590 5.590 20 Si 0.781 3.219 21 H -0.190 1.190 22 H -0.229 1.229 23 H -0.172 1.172 24 C -0.137 4.137 25 C -0.145 4.145 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.154 0.846 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.149 0.851 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.902 -18.487 -11.164 21.791 hybrid contribution -1.127 1.590 1.314 2.350 sum -4.028 -16.897 -9.850 19.969 Atomic orbital electron populations 1.23543 0.75201 1.05773 1.02196 1.86493 1.24630 1.32465 1.83589 1.24482 0.93084 0.81068 0.70795 1.90673 1.68184 1.37813 1.46940 1.20145 0.85374 0.98685 1.03923 0.83989 1.21404 0.98038 1.00057 0.95071 1.21266 0.91848 0.98320 1.02818 1.21896 0.99922 0.92202 0.99951 1.21329 0.90873 0.93971 0.96063 0.97336 1.60961 1.41843 1.19689 1.07679 1.19447 0.92541 0.93123 0.87757 0.95821 1.21959 0.97624 1.01109 0.98539 1.22062 1.23789 1.16114 0.96104 0.95251 1.25900 0.96720 0.94906 1.01056 1.70080 1.41231 1.26673 1.21024 0.85778 0.78564 0.80514 0.77035 1.18962 1.22931 1.17245 1.21436 0.92886 1.02714 0.96681 1.20317 0.96923 0.95183 1.02055 0.92812 0.91972 0.84578 0.93566 0.88900 0.89848 0.89352 0.94599 0.90531 0.85108 0.93443 0.95236 0.91562 0.92665 0.88044 0.91950 0.91346 0.94850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.36 -7.67 10.03 -51.41 -0.52 -8.19 16 3 C 0.46 12.26 7.22 71.23 0.51 12.78 16 4 O -0.55 -18.81 15.53 21.94 0.34 -18.46 16 5 C -0.06 -1.42 2.13 -13.40 -0.03 -1.45 16 6 H 0.14 2.23 7.47 -2.39 -0.02 2.21 16 7 C -0.11 -2.39 4.97 30.20 0.15 -2.24 16 8 C -0.10 -2.02 5.31 30.14 0.16 -1.86 16 9 C -0.10 -2.79 5.23 31.32 0.16 -2.62 16 10 C 0.09 3.00 1.83 44.46 0.08 3.08 16 11 H 0.01 0.37 6.06 -2.38 -0.01 0.35 16 12 N -0.67 -26.27 6.02 -475.64 -2.86 -29.13 16 13 C 0.18 8.44 1.97 44.17 0.09 8.52 16 14 H 0.02 1.15 6.37 -2.39 -0.02 1.14 16 15 C -0.13 -5.68 8.92 71.98 0.64 -5.04 16 16 C -0.54 -31.04 8.83 25.60 0.23 -30.81 16 17 H 0.03 1.88 7.99 -2.91 -0.02 1.85 16 18 C 0.01 0.70 5.45 84.66 0.46 1.16 16 19 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 20 Si 0.95 45.83 24.31 68.60 1.67 47.50 16 21 H -0.26 -11.99 6.92 99.48 0.69 -11.30 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 23 H -0.25 -11.09 6.53 99.48 0.65 -10.44 16 24 C -0.10 -2.75 5.27 30.20 0.16 -2.60 16 25 C -0.11 -3.06 3.84 28.74 0.11 -2.95 16 26 H 0.05 0.98 8.13 -2.39 -0.02 0.96 16 27 H 0.06 1.01 8.13 -2.39 -0.02 1.00 16 28 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.33 6.98 -2.39 -0.02 1.31 16 30 H 0.09 1.73 7.54 -2.39 -0.02 1.71 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.29 6.63 -2.39 -0.02 1.28 16 33 H 0.04 1.11 7.72 -2.39 -0.02 1.09 16 34 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 35 H 0.33 13.31 7.45 -89.70 -0.67 12.64 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.03 1.26 3.44 -2.38 -0.01 1.26 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 40 H 0.10 2.13 6.98 -2.39 -0.02 2.11 16 41 H 0.06 1.84 7.25 -2.39 -0.02 1.83 16 42 H 0.07 1.93 7.87 -2.39 -0.02 1.91 16 43 H 0.03 1.23 7.39 -2.39 -0.02 1.21 16 Total: -1.00 -71.96 324.30 3.10 -68.86 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.25 Total: 22.22 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 3.92 Total: -22.41 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -2.57 Total: -89.50 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.17 Total: -26.65 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.67 Total: 47.50 kcal Total: -71.96 3.10 -68.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172797164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.509 kcal (2) G-P(sol) polarization free energy of solvation -71.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds