Wall clock time and date at job start Mon Mar 30 2020 00:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99894 * 2 1 4 4 O 1.20825 * 120.00084 * 359.71996 * 3 2 1 5 5 C 1.50702 * 119.99984 * 180.02562 * 3 2 1 6 6 H 1.09001 * 108.84990 * 299.99572 * 5 3 2 7 7 C 1.50473 * 108.87630 * 58.55652 * 5 3 2 8 8 C 1.54235 * 108.51080 * 214.93354 * 7 5 3 9 9 C 1.45547 * 112.41263 * 280.00055 * 8 7 5 10 10 C 1.54242 * 112.40029 * 61.93777 * 9 8 7 11 11 H 1.09005 * 109.62843 * 39.73795 * 10 9 8 12 12 N 1.46902 * 109.62686 * 160.11740 * 10 9 8 13 13 C 1.46896 * 110.99894 * 206.09276 * 12 10 9 14 14 H 1.08991 * 109.47294 * 325.79690 * 13 12 10 15 15 C 1.52999 * 109.46864 * 85.79811 * 13 12 10 16 16 C 1.50699 * 109.46894 * 205.79202 * 13 12 10 17 17 H 1.08001 * 120.00542 * 0.02562 * 16 13 12 18 18 C 1.37883 * 119.99616 * 180.02562 * 16 13 12 19 19 N 1.31507 * 120.00343 * 359.97438 * 18 16 13 20 20 Si 1.86807 * 119.99637 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47090 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47081 * 119.99772 * 20 18 16 23 23 H 1.48496 * 109.46895 * 239.99966 * 20 18 16 24 24 C 1.50474 * 108.52877 * 280.02716 * 10 9 8 25 25 C 1.54000 * 112.55090 * 94.06872 * 24 10 9 26 26 H 1.09000 * 109.47270 * 60.00071 * 1 2 3 27 27 H 1.09005 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47300 * 300.00396 * 1 2 3 29 29 H 1.08994 * 109.62978 * 334.64057 * 7 5 3 30 30 H 1.08999 * 109.62863 * 95.03217 * 7 5 3 31 31 H 1.09000 * 108.89607 * 40.75806 * 8 7 5 32 32 H 1.09004 * 108.89548 * 159.24859 * 8 7 5 33 33 H 1.08996 * 108.89895 * 182.68941 * 9 8 7 34 34 H 1.08997 * 108.89568 * 301.28434 * 9 8 7 35 35 H 1.00903 * 110.99693 * 82.14079 * 12 10 9 36 36 H 1.08997 * 109.47339 * 185.64022 * 15 13 12 37 37 H 1.09004 * 109.47207 * 305.63531 * 15 13 12 38 38 H 1.09000 * 109.47811 * 65.63179 * 15 13 12 39 39 H 0.96997 * 120.00223 * 180.02562 * 19 18 16 40 40 H 1.09003 * 108.87667 * 214.92475 * 24 10 9 41 41 H 1.09003 * 108.87361 * 333.46449 * 24 10 9 42 42 H 1.08999 * 108.87313 * 197.51569 * 25 24 10 43 43 H 1.09000 * 108.71693 * 79.25338 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0051 5 6 3.5663 1.2749 -0.0006 6 1 3.9454 0.7781 0.8926 7 6 4.0909 0.5589 -1.2157 8 6 5.4217 -0.1263 -0.8438 9 6 6.5437 0.8007 -0.8495 10 6 6.3773 1.9313 0.1865 11 1 5.9501 1.5270 1.1043 12 7 7.6861 2.5329 0.4748 13 6 7.7067 3.1303 1.8166 14 1 6.7233 3.5397 2.0472 15 6 8.0671 2.0580 2.8468 16 6 8.7329 4.2332 1.8597 17 1 9.3115 4.4672 0.9784 18 6 8.9329 4.9435 3.0245 19 7 8.2281 4.6589 4.0976 20 14 10.2044 6.3110 3.0777 21 1 10.8572 6.4319 1.7494 22 1 9.5383 7.5931 3.4209 23 1 11.2288 5.9948 4.1052 24 6 5.4532 2.9719 -0.3856 25 6 3.9878 2.7563 0.0361 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.3698 -0.1922 -1.5378 30 1 4.2569 1.2757 -2.0198 31 1 5.3286 -0.5617 0.1511 32 1 5.6198 -0.9245 -1.5592 33 1 7.4577 0.2501 -0.6272 34 1 6.6311 1.2432 -1.8417 35 1 7.9339 3.2134 -0.2278 36 1 7.9849 2.4758 3.8501 37 1 7.3839 1.2145 2.7474 38 1 9.0892 1.7195 2.6767 39 1 8.3686 5.1588 4.9168 40 1 5.7772 3.9559 -0.0468 41 1 5.5128 2.9366 -1.4734 42 1 3.3411 3.3225 -0.6342 43 1 3.8565 3.1341 1.0501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172797166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:51 Heat of formation + Delta-G solvation = -105.230955 kcal Electronic energy + Delta-G solvation = -21660.056005 eV Core-core repulsion = 18511.477690 eV Total energy + Delta-G solvation = -3148.578315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.81200 -38.77626 -36.59018 -35.39702 -32.87992 -32.31696 -30.60165 -28.20282 -27.17173 -25.27822 -24.94453 -23.62520 -21.62755 -20.37606 -19.80954 -19.01416 -17.64462 -16.91880 -16.41902 -16.27038 -15.01814 -14.88906 -14.65935 -14.21256 -13.84990 -13.58159 -13.45661 -13.11417 -13.09931 -12.34155 -12.31329 -12.02084 -11.89721 -11.54512 -11.22081 -11.15220 -10.94349 -10.92676 -10.71218 -10.66993 -10.55048 -10.30253 -10.24748 -10.16897 -10.07065 -9.91846 -9.60467 -8.78300 -8.47028 -7.20625 -6.01194 -4.06835 2.16217 2.61441 3.29598 3.37629 3.41566 4.41442 4.56464 4.65887 4.74543 4.92003 4.99041 5.12422 5.21894 5.30165 5.33484 5.34913 5.42346 5.45094 5.47364 5.69962 5.82953 5.99748 6.05299 6.13207 6.20756 6.28746 6.35311 6.40350 6.49800 6.53212 6.73324 6.75816 6.92985 7.17033 7.28041 7.56816 7.68727 7.81485 7.93222 8.28237 8.44415 8.72703 9.05206 9.59240 11.05524 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027636 B = 0.004248 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.913361 B = 6589.749991 C = 7016.280920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.462 3.538 4 O -0.508 6.508 5 C -0.075 4.075 6 H 0.109 0.891 7 C -0.111 4.111 8 C -0.110 4.110 9 C -0.113 4.113 10 C 0.089 3.911 11 H 0.071 0.929 12 N -0.685 5.685 13 C 0.211 3.789 14 H 0.002 0.998 15 C -0.121 4.121 16 C -0.518 4.518 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.894 3.106 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.142 4.142 25 C -0.100 4.100 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.330 0.670 36 H 0.075 0.925 37 H 0.004 0.996 38 H 0.031 0.969 39 H 0.260 0.740 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 -10.084 -9.525 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.306 3.694 4 O -0.396 6.396 5 C -0.094 4.094 6 H 0.127 0.873 7 C -0.149 4.149 8 C -0.147 4.147 9 C -0.151 4.151 10 C -0.022 4.022 11 H 0.089 0.911 12 N -0.314 5.314 13 C 0.104 3.896 14 H 0.020 0.980 15 C -0.179 4.179 16 C -0.557 4.557 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.722 3.278 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.181 4.181 25 C -0.138 4.138 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.148 0.852 36 H 0.094 0.906 37 H 0.023 0.977 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.684 -10.317 -9.112 18.055 hybrid contribution -0.196 1.662 0.110 1.677 sum -11.880 -8.655 -9.002 17.236 Atomic orbital electron populations 1.23241 0.76767 1.03492 1.02457 1.86520 1.23081 1.33760 1.84218 1.24155 0.92524 0.81070 0.71686 1.90649 1.67338 1.36386 1.45179 1.21047 0.85788 1.00120 1.02440 0.87276 1.21400 0.97885 0.99431 0.96167 1.20442 0.94076 0.98358 1.01873 1.20527 0.98375 0.97186 0.98994 1.21282 0.89918 0.93729 0.97249 0.91062 1.60794 1.25530 1.38904 1.06195 1.19091 0.95583 0.91331 0.83606 0.97993 1.21695 0.97970 0.96168 1.02112 1.21320 1.21045 1.16010 0.97320 0.92251 1.24913 0.96126 0.97297 0.95617 1.69915 1.40513 1.40805 1.01598 0.86504 0.81417 0.81783 0.78067 1.19773 1.21146 1.21026 1.22176 0.93918 1.01250 1.00786 1.21792 0.96951 0.92009 1.03085 0.92058 0.88220 0.91983 0.91066 0.90767 0.91883 0.92019 0.91070 0.92851 0.85227 0.90622 0.97703 0.94989 0.93051 0.90955 0.92373 0.91189 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.20 9.99 -39.25 -0.39 -4.60 16 3 C 0.46 6.26 7.13 36.01 0.26 6.51 16 4 O -0.51 -8.20 15.29 -18.75 -0.29 -8.49 16 5 C -0.07 -0.95 2.12 -92.47 -0.20 -1.15 16 6 H 0.11 1.38 6.63 -51.93 -0.34 1.04 16 7 C -0.11 -1.22 5.10 -27.35 -0.14 -1.36 16 8 C -0.11 -1.24 5.26 -29.60 -0.16 -1.39 16 9 C -0.11 -1.54 4.91 -29.60 -0.15 -1.68 16 10 C 0.09 1.49 1.92 -68.32 -0.13 1.36 16 11 H 0.07 1.29 6.01 -51.93 -0.31 0.97 16 12 N -0.68 -14.04 5.98 -101.60 -0.61 -14.65 16 13 C 0.21 5.24 2.28 -68.87 -0.16 5.08 16 14 H 0.00 0.07 7.55 -51.93 -0.39 -0.33 16 15 C -0.12 -2.99 9.12 37.16 0.34 -2.65 16 16 C -0.52 -14.09 8.59 -34.44 -0.30 -14.38 16 17 H 0.06 1.60 7.61 -52.49 -0.40 1.20 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -25.41 11.38 55.43 0.63 -24.78 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 C -0.14 -2.20 4.63 -27.47 -0.13 -2.33 16 25 C -0.10 -1.46 4.81 -25.65 -0.12 -1.59 16 26 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.71 7.28 -51.93 -0.38 0.33 16 30 H 0.07 0.81 6.99 -51.93 -0.36 0.45 16 31 H 0.06 0.73 7.47 -51.93 -0.39 0.34 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 34 H 0.05 0.69 7.47 -51.93 -0.39 0.30 16 35 H 0.33 6.69 7.88 -39.29 -0.31 6.38 16 36 H 0.08 2.04 6.24 -51.93 -0.32 1.71 16 37 H 0.00 0.09 7.46 -51.93 -0.39 -0.30 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.07 1.30 7.55 -51.93 -0.39 0.90 16 41 H 0.06 0.80 6.63 -51.93 -0.34 0.46 16 42 H 0.07 1.03 7.32 -51.93 -0.38 0.65 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -29.75 330.55 -7.79 -37.54 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.19 Total: 4.33 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 0.10 Total: -10.59 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.02 Total: -39.43 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.68 Total: -13.09 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.75 -7.79 -37.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172797166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.687 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds