Wall clock time and date at job start Mon Mar 30 2020 00:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99894 * 2 1 4 4 O 1.20825 * 120.00084 * 359.71996 * 3 2 1 5 5 C 1.50702 * 119.99984 * 180.02562 * 3 2 1 6 6 H 1.09001 * 108.84990 * 299.99572 * 5 3 2 7 7 C 1.50473 * 108.87630 * 58.55652 * 5 3 2 8 8 C 1.54235 * 108.51080 * 214.93354 * 7 5 3 9 9 C 1.45547 * 112.41263 * 280.00055 * 8 7 5 10 10 C 1.54242 * 112.40029 * 61.93777 * 9 8 7 11 11 H 1.09005 * 109.62843 * 39.73795 * 10 9 8 12 12 N 1.46902 * 109.62686 * 160.11740 * 10 9 8 13 13 C 1.46896 * 110.99894 * 206.09276 * 12 10 9 14 14 H 1.08991 * 109.47294 * 325.79690 * 13 12 10 15 15 C 1.52999 * 109.46864 * 85.79811 * 13 12 10 16 16 C 1.50699 * 109.46894 * 205.79202 * 13 12 10 17 17 H 1.08001 * 120.00542 * 0.02562 * 16 13 12 18 18 C 1.37883 * 119.99616 * 180.02562 * 16 13 12 19 19 N 1.31507 * 120.00343 * 359.97438 * 18 16 13 20 20 Si 1.86807 * 119.99637 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47090 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47081 * 119.99772 * 20 18 16 23 23 H 1.48496 * 109.46895 * 239.99966 * 20 18 16 24 24 C 1.50474 * 108.52877 * 280.02716 * 10 9 8 25 25 C 1.54000 * 112.55090 * 94.06872 * 24 10 9 26 26 H 1.09000 * 109.47270 * 60.00071 * 1 2 3 27 27 H 1.09005 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47300 * 300.00396 * 1 2 3 29 29 H 1.08994 * 109.62978 * 334.64057 * 7 5 3 30 30 H 1.08999 * 109.62863 * 95.03217 * 7 5 3 31 31 H 1.09000 * 108.89607 * 40.75806 * 8 7 5 32 32 H 1.09004 * 108.89548 * 159.24859 * 8 7 5 33 33 H 1.08996 * 108.89895 * 182.68941 * 9 8 7 34 34 H 1.08997 * 108.89568 * 301.28434 * 9 8 7 35 35 H 1.00903 * 110.99693 * 82.14079 * 12 10 9 36 36 H 1.08997 * 109.47339 * 185.64022 * 15 13 12 37 37 H 1.09004 * 109.47207 * 305.63531 * 15 13 12 38 38 H 1.09000 * 109.47811 * 65.63179 * 15 13 12 39 39 H 0.96997 * 120.00223 * 180.02562 * 19 18 16 40 40 H 1.09003 * 108.87667 * 214.92475 * 24 10 9 41 41 H 1.09003 * 108.87361 * 333.46449 * 24 10 9 42 42 H 1.08999 * 108.87313 * 197.51569 * 25 24 10 43 43 H 1.09000 * 108.71693 * 79.25338 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0051 5 6 3.5663 1.2749 -0.0006 6 1 3.9454 0.7781 0.8926 7 6 4.0909 0.5589 -1.2157 8 6 5.4217 -0.1263 -0.8438 9 6 6.5437 0.8007 -0.8495 10 6 6.3773 1.9313 0.1865 11 1 5.9501 1.5270 1.1043 12 7 7.6861 2.5329 0.4748 13 6 7.7067 3.1303 1.8166 14 1 6.7233 3.5397 2.0472 15 6 8.0671 2.0580 2.8468 16 6 8.7329 4.2332 1.8597 17 1 9.3115 4.4672 0.9784 18 6 8.9329 4.9435 3.0245 19 7 8.2281 4.6589 4.0976 20 14 10.2044 6.3110 3.0777 21 1 10.8572 6.4319 1.7494 22 1 9.5383 7.5931 3.4209 23 1 11.2288 5.9948 4.1052 24 6 5.4532 2.9719 -0.3856 25 6 3.9878 2.7563 0.0361 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.3698 -0.1922 -1.5378 30 1 4.2569 1.2757 -2.0198 31 1 5.3286 -0.5617 0.1511 32 1 5.6198 -0.9245 -1.5592 33 1 7.4577 0.2501 -0.6272 34 1 6.6311 1.2432 -1.8417 35 1 7.9339 3.2134 -0.2278 36 1 7.9849 2.4758 3.8501 37 1 7.3839 1.2145 2.7474 38 1 9.0892 1.7195 2.6767 39 1 8.3686 5.1588 4.9168 40 1 5.7772 3.9559 -0.0468 41 1 5.5128 2.9366 -1.4734 42 1 3.3411 3.3225 -0.6342 43 1 3.8565 3.1341 1.0501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172797166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:51 Heat of formation + Delta-G solvation = -122.946718 kcal Electronic energy + Delta-G solvation = -21660.824218 eV Core-core repulsion = 18511.477690 eV Total energy + Delta-G solvation = -3149.346528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.86137 -39.98443 -37.65067 -37.00389 -34.63354 -33.45269 -32.24251 -29.47960 -28.38867 -27.27473 -26.07778 -24.94922 -22.73887 -21.67259 -21.48056 -20.24000 -18.73037 -18.39689 -17.80174 -17.37091 -16.82874 -16.13797 -15.88364 -15.49338 -15.39656 -14.83880 -14.69627 -14.37362 -14.17193 -13.95214 -13.48095 -13.27751 -13.15197 -13.03082 -12.83997 -12.73480 -12.45803 -12.31923 -12.20826 -12.16103 -11.87752 -11.83880 -11.69305 -11.55184 -11.34286 -11.14482 -10.96209 -10.80020 -10.56603 -8.92913 -8.11982 -6.25026 1.10772 1.40860 1.42812 1.54292 1.69328 2.42231 3.17254 3.49018 3.59318 3.67355 3.86494 4.12990 4.16384 4.25633 4.31312 4.31459 4.33270 4.49019 4.53237 4.58322 4.69975 4.82637 4.88723 4.99564 5.03147 5.08550 5.13129 5.17235 5.25704 5.32535 5.34933 5.36721 5.39682 5.50210 5.60173 5.60658 5.75423 5.91779 6.24535 6.55556 6.67041 6.86622 7.08943 7.45639 8.94096 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027636 B = 0.004248 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.913361 B = 6589.749991 C = 7016.280920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.541 6.541 5 C -0.072 4.072 6 H 0.110 0.890 7 C -0.104 4.104 8 C -0.107 4.107 9 C -0.101 4.101 10 C 0.087 3.913 11 H 0.055 0.945 12 N -0.682 5.682 13 C 0.218 3.782 14 H -0.030 1.030 15 C -0.109 4.109 16 C -0.536 4.536 17 H 0.059 0.941 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.959 3.041 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.281 1.281 24 C -0.133 4.133 25 C -0.094 4.094 26 H 0.063 0.937 27 H 0.135 0.865 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.332 0.668 36 H 0.050 0.950 37 H 0.023 0.977 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.040 0.960 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.857 -11.393 -11.200 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.431 6.431 5 C -0.091 4.091 6 H 0.128 0.872 7 C -0.142 4.142 8 C -0.144 4.144 9 C -0.139 4.139 10 C -0.023 4.023 11 H 0.073 0.927 12 N -0.312 5.312 13 C 0.109 3.891 14 H -0.013 1.013 15 C -0.167 4.167 16 C -0.574 4.574 17 H 0.077 0.923 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.785 3.215 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.207 1.207 24 C -0.172 4.172 25 C -0.132 4.132 26 H 0.082 0.918 27 H 0.153 0.847 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.149 0.851 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.816 -11.656 -10.805 19.805 hybrid contribution -0.239 2.027 0.633 2.137 sum -12.056 -9.629 -10.172 18.481 Atomic orbital electron populations 1.23566 0.74925 1.05800 1.02383 1.86502 1.24853 1.32433 1.83590 1.24210 0.92673 0.81165 0.70836 1.90640 1.68033 1.37527 1.46870 1.21007 0.85741 0.98624 1.03703 0.87234 1.21390 0.98015 0.99708 0.95062 1.20408 0.93062 0.98291 1.02684 1.20434 0.99161 0.96148 0.98164 1.21395 0.88221 0.94840 0.97843 0.92708 1.60748 1.28069 1.38120 1.04235 1.18848 0.93282 0.91009 0.85922 1.01281 1.21511 0.97975 0.96599 1.00657 1.21666 1.21468 1.16884 0.97397 0.92306 1.25718 0.98017 0.99595 0.95312 1.70045 1.41849 1.41841 1.02076 0.85485 0.78937 0.78790 0.78274 1.18955 1.20857 1.20666 1.22027 0.94071 0.99083 1.01977 1.21664 0.96299 0.93802 1.01445 0.91827 0.84735 0.92465 0.89287 0.90249 0.92092 0.89345 0.91921 0.91500 0.85105 0.93154 0.95780 0.95581 0.93010 0.94087 0.90021 0.91238 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.36 -7.65 9.99 -51.39 -0.51 -8.16 16 3 C 0.47 12.14 7.13 71.24 0.51 12.65 16 4 O -0.54 -17.35 15.29 21.97 0.34 -17.01 16 5 C -0.07 -1.75 2.12 -12.00 -0.03 -1.78 16 6 H 0.11 2.69 6.63 -2.39 -0.02 2.67 16 7 C -0.10 -1.99 5.10 30.20 0.15 -1.83 16 8 C -0.11 -2.07 5.26 28.74 0.15 -1.92 16 9 C -0.10 -2.52 4.91 28.74 0.14 -2.38 16 10 C 0.09 2.88 1.92 44.52 0.09 2.97 16 11 H 0.05 1.99 6.01 -2.38 -0.01 1.98 16 12 N -0.68 -28.10 5.98 -475.36 -2.84 -30.94 16 13 C 0.22 11.09 2.28 44.17 0.10 11.19 16 14 H -0.03 -1.72 7.55 -2.39 -0.02 -1.74 16 15 C -0.11 -5.49 9.12 71.98 0.66 -4.83 16 16 C -0.54 -29.56 8.59 25.60 0.22 -29.34 16 17 H 0.06 3.18 7.61 -2.91 -0.02 3.16 16 18 C 0.01 0.70 5.30 84.66 0.45 1.15 16 19 N -0.92 -53.63 11.38 21.45 0.24 -53.39 16 20 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 C -0.13 -4.10 4.63 30.11 0.14 -3.96 16 25 C -0.09 -2.77 4.81 31.29 0.15 -2.62 16 26 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 27 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.44 7.28 -2.39 -0.02 1.42 16 30 H 0.08 1.47 6.99 -2.39 -0.02 1.45 16 31 H 0.06 1.24 7.47 -2.39 -0.02 1.22 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.70 8.12 -2.39 -0.02 1.69 16 34 H 0.07 1.51 7.47 -2.39 -0.02 1.49 16 35 H 0.33 13.45 7.88 -89.69 -0.71 12.74 16 36 H 0.05 2.78 6.24 -2.39 -0.01 2.76 16 37 H 0.02 1.06 7.46 -2.39 -0.02 1.05 16 38 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.04 1.52 7.55 -2.39 -0.02 1.50 16 41 H 0.08 2.13 6.63 -2.39 -0.02 2.11 16 42 H 0.07 2.05 7.32 -2.39 -0.02 2.03 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -64.94 330.55 3.46 -61.48 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.28 Total: 21.17 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 3.93 Total: -19.10 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -2.60 Total: -84.33 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.18 Total: -25.17 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -64.94 3.46 -61.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172797166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.465 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds