Wall clock time and date at job start Mon Mar 30 2020 00:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00022 * 2 1 4 4 O 1.20826 * 120.00065 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99892 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.78261 * 59.51578 * 5 3 2 7 7 C 1.54237 * 109.63343 * 299.03439 * 5 3 2 8 8 C 1.45540 * 112.41107 * 160.29866 * 7 5 3 9 9 C 1.54238 * 112.40548 * 61.93072 * 8 7 5 10 10 C 1.50469 * 108.52839 * 280.02265 * 9 8 7 11 11 H 1.08998 * 108.79467 * 333.42121 * 10 9 8 12 12 N 1.46908 * 108.87880 * 214.92634 * 10 9 8 13 13 C 1.46895 * 110.99742 * 82.01991 * 12 10 9 14 14 H 1.08994 * 109.47601 * 324.99937 * 13 12 10 15 15 C 1.52996 * 109.47260 * 85.00495 * 13 12 10 16 16 C 1.50702 * 109.46770 * 205.00021 * 13 12 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99942 * 179.72214 * 16 13 12 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 13 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 13 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.54068 * 112.50023 * 94.14552 * 10 9 8 25 25 C 1.50469 * 109.63029 * 180.02562 * 5 3 2 26 26 H 1.09001 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46429 * 299.99424 * 1 2 3 28 28 H 1.08997 * 109.47145 * 59.99283 * 1 2 3 29 29 H 1.09006 * 108.89016 * 281.05299 * 7 5 3 30 30 H 1.09001 * 108.89499 * 39.63347 * 7 5 3 31 31 H 1.08992 * 108.89593 * 182.68625 * 8 7 5 32 32 H 1.08999 * 108.89496 * 301.18148 * 8 7 5 33 33 H 1.09001 * 109.62971 * 160.30274 * 9 8 7 34 34 H 1.09007 * 109.62811 * 39.72982 * 9 8 7 35 35 H 1.00896 * 110.99110 * 318.06936 * 12 10 9 36 36 H 1.09001 * 109.47094 * 179.97438 * 15 13 12 37 37 H 1.09003 * 109.46851 * 299.99715 * 15 13 12 38 38 H 1.09003 * 109.47532 * 59.99790 * 15 13 12 39 39 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 40 40 H 1.08994 * 108.81216 * 79.14662 * 24 10 9 41 41 H 1.09000 * 108.81443 * 197.42467 * 24 10 9 42 42 H 1.09003 * 108.87376 * 93.08557 * 25 5 3 43 43 H 1.09000 * 108.79860 * 334.59363 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9624 0.7743 -0.8831 7 6 4.1203 0.5981 1.2711 8 6 5.5212 0.2272 1.1364 9 6 6.4337 1.4497 0.9087 10 6 6.3500 1.8455 -0.5405 11 1 6.0903 0.9664 -1.1303 12 7 7.6641 2.3376 -0.9756 13 6 8.5556 1.2225 -1.3214 14 1 8.3574 0.3799 -0.6590 15 6 8.3067 0.8012 -2.7710 16 6 9.9896 1.6585 -1.1642 17 1 10.2160 2.6633 -0.8395 18 6 11.0125 0.7726 -1.4290 19 7 10.7368 -0.4511 -1.8241 20 14 12.7898 1.3108 -1.2268 21 1 13.0258 1.7207 0.1809 22 1 13.6910 0.1820 -1.5718 23 1 13.0657 2.4574 -2.1292 24 6 5.2985 2.9431 -0.7922 25 6 3.9971 2.7166 0.0011 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 4.0162 1.2853 2.1109 30 1 3.5369 -0.2996 1.4758 31 1 5.8391 -0.2865 2.0435 32 1 5.6264 -0.4539 0.2919 33 1 7.4625 1.1903 1.1587 34 1 6.0996 2.2775 1.5342 35 1 8.0802 2.9281 -0.2712 36 1 8.9685 -0.0259 -3.0278 37 1 7.2695 0.4859 -2.8847 38 1 8.5050 1.6438 -3.4335 39 1 11.4564 -1.0742 -2.0108 40 1 5.7208 3.9065 -0.5067 41 1 5.0625 2.9666 -1.8561 42 1 4.1508 3.0383 1.0312 43 1 3.2047 3.3200 -0.4418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172797175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:55 Heat of formation + Delta-G solvation = -104.227938 kcal Electronic energy + Delta-G solvation = -21597.264591 eV Core-core repulsion = 18448.729770 eV Total energy + Delta-G solvation = -3148.534821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.86112 -38.78951 -36.65131 -35.46319 -32.90148 -32.18906 -30.57316 -28.25585 -27.09246 -25.20767 -25.14603 -23.58086 -21.65625 -20.47873 -19.80645 -18.87642 -17.72021 -16.92169 -16.44942 -16.29137 -15.00279 -14.94715 -14.64199 -14.23699 -13.96757 -13.53777 -13.47713 -13.13030 -12.96030 -12.53964 -12.35304 -11.96027 -11.86988 -11.44606 -11.32110 -11.07500 -10.94972 -10.90215 -10.73299 -10.63313 -10.57194 -10.41316 -10.25322 -10.11449 -10.09586 -9.94508 -9.60868 -8.81372 -8.45366 -7.18231 -6.01228 -4.07304 2.10623 2.60543 3.31498 3.36110 3.38947 4.40717 4.53752 4.62717 4.73238 4.89635 4.96755 5.07685 5.23774 5.30254 5.31792 5.36737 5.41708 5.52110 5.56087 5.58571 5.98363 6.01287 6.04692 6.12549 6.18164 6.26742 6.30355 6.34776 6.45755 6.52477 6.72588 6.80562 6.93203 7.18375 7.27832 7.55888 7.64713 7.80243 7.93479 8.30352 8.44746 8.72725 9.04522 9.58653 11.04961 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.038200 B = 0.003849 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.815386 B = 7272.709999 C = 7385.414319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.467 3.533 4 O -0.510 6.510 5 C -0.078 4.078 6 H 0.115 0.885 7 C -0.101 4.101 8 C -0.118 4.118 9 C -0.146 4.146 10 C 0.086 3.914 11 H 0.068 0.932 12 N -0.689 5.689 13 C 0.213 3.787 14 H 0.004 0.996 15 C -0.124 4.124 16 C -0.519 4.519 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.895 3.105 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.101 4.101 25 C -0.113 4.113 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.330 0.670 36 H 0.079 0.921 37 H 0.003 0.997 38 H 0.030 0.970 39 H 0.261 0.739 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.634 0.239 5.442 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.398 6.398 5 C -0.097 4.097 6 H 0.133 0.867 7 C -0.138 4.138 8 C -0.156 4.156 9 C -0.185 4.185 10 C -0.025 4.025 11 H 0.086 0.914 12 N -0.319 5.319 13 C 0.105 3.895 14 H 0.021 0.979 15 C -0.183 4.183 16 C -0.557 4.557 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.723 3.277 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.139 4.139 25 C -0.151 4.151 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.098 0.902 37 H 0.022 0.978 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.953 0.457 4.717 17.603 hybrid contribution 0.961 -0.129 0.913 1.332 sum -15.992 0.328 5.630 16.957 Atomic orbital electron populations 1.23252 0.76724 1.03575 1.02416 1.86535 1.23120 1.33676 1.84051 1.24006 0.92399 0.81038 0.71473 1.90629 1.67199 1.36390 1.45557 1.20916 0.85872 1.00384 1.02531 0.86749 1.20460 0.97532 1.00615 0.95217 1.20422 0.93878 0.98724 1.02530 1.22203 1.00263 0.97260 0.98805 1.21366 0.91580 0.96571 0.92980 0.91391 1.60769 1.02764 1.22819 1.45522 1.19066 0.89939 0.87595 0.92880 0.97882 1.21723 0.96814 1.01160 0.98565 1.21248 0.90632 0.98232 1.45601 0.92384 1.24909 0.99083 0.94877 0.95089 1.69890 1.32215 1.04809 1.45957 0.86614 0.84482 0.78079 0.78513 1.20375 1.21353 1.20245 1.21869 0.92813 0.99582 0.99642 1.21409 0.98528 0.93145 1.02011 0.88185 0.92045 0.91971 0.91656 0.91338 0.91925 0.91582 0.90853 0.92138 0.85244 0.90240 0.97825 0.95100 0.92935 0.91550 0.92069 0.91557 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.11 10.20 -39.26 -0.40 -4.51 16 3 C 0.47 6.00 7.22 36.01 0.26 6.26 16 4 O -0.51 -7.64 15.04 -18.75 -0.28 -7.92 16 5 C -0.08 -0.95 2.31 -92.39 -0.21 -1.16 16 6 H 0.11 1.42 6.97 -51.93 -0.36 1.06 16 7 C -0.10 -1.14 4.67 -29.60 -0.14 -1.28 16 8 C -0.12 -1.53 5.26 -29.60 -0.16 -1.69 16 9 C -0.15 -2.21 4.79 -27.35 -0.13 -2.34 16 10 C 0.09 1.43 1.84 -68.42 -0.13 1.31 16 11 H 0.07 1.22 5.54 -51.93 -0.29 0.94 16 12 N -0.69 -14.16 5.93 -101.70 -0.60 -14.76 16 13 C 0.21 5.24 2.20 -68.87 -0.15 5.09 16 14 H 0.00 0.09 7.15 -51.93 -0.37 -0.28 16 15 C -0.12 -3.07 9.18 37.16 0.34 -2.73 16 16 C -0.52 -14.03 8.59 -34.44 -0.30 -14.32 16 17 H 0.06 1.55 7.62 -52.49 -0.40 1.15 16 18 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 19 N -0.89 -25.18 11.33 55.43 0.63 -24.56 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.10 -1.45 5.45 -25.60 -0.14 -1.59 16 25 C -0.11 -1.43 4.69 -27.43 -0.13 -1.56 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.49 8.13 -51.92 -0.42 0.07 16 28 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.06 0.71 7.47 -51.93 -0.39 0.32 16 30 H 0.07 0.72 7.67 -51.93 -0.40 0.32 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.93 7.47 -51.93 -0.39 0.54 16 33 H 0.07 1.30 7.19 -51.93 -0.37 0.93 16 34 H 0.06 0.83 6.98 -51.92 -0.36 0.47 16 35 H 0.33 6.68 7.98 -39.29 -0.31 6.37 16 36 H 0.08 2.14 6.08 -51.93 -0.32 1.82 16 37 H 0.00 0.06 7.38 -51.93 -0.38 -0.32 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.07 0.96 8.12 -51.93 -0.42 0.53 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.80 6.63 -51.93 -0.34 0.46 16 43 H 0.08 1.04 6.67 -51.93 -0.35 0.69 16 LS Contribution 329.50 15.07 4.97 4.97 Total: -1.00 -29.34 329.50 -7.75 -37.08 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.13 Total: 4.64 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.02 Total: -39.31 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.68 Total: -12.43 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.34 -7.75 -37.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172797175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.144 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds