Wall clock time and date at job start Mon Mar 30 2020 00:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00022 * 2 1 4 4 O 1.20826 * 120.00065 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99892 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.78261 * 59.51578 * 5 3 2 7 7 C 1.54237 * 109.63343 * 299.03439 * 5 3 2 8 8 C 1.45540 * 112.41107 * 160.29866 * 7 5 3 9 9 C 1.54238 * 112.40548 * 61.93072 * 8 7 5 10 10 C 1.50469 * 108.52839 * 280.02265 * 9 8 7 11 11 H 1.08998 * 108.79467 * 333.42121 * 10 9 8 12 12 N 1.46908 * 108.87880 * 214.92634 * 10 9 8 13 13 C 1.46895 * 110.99742 * 82.01991 * 12 10 9 14 14 H 1.08994 * 109.47601 * 324.99937 * 13 12 10 15 15 C 1.52996 * 109.47260 * 85.00495 * 13 12 10 16 16 C 1.50702 * 109.46770 * 205.00021 * 13 12 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99942 * 179.72214 * 16 13 12 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 13 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 13 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.54068 * 112.50023 * 94.14552 * 10 9 8 25 25 C 1.50469 * 109.63029 * 180.02562 * 5 3 2 26 26 H 1.09001 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46429 * 299.99424 * 1 2 3 28 28 H 1.08997 * 109.47145 * 59.99283 * 1 2 3 29 29 H 1.09006 * 108.89016 * 281.05299 * 7 5 3 30 30 H 1.09001 * 108.89499 * 39.63347 * 7 5 3 31 31 H 1.08992 * 108.89593 * 182.68625 * 8 7 5 32 32 H 1.08999 * 108.89496 * 301.18148 * 8 7 5 33 33 H 1.09001 * 109.62971 * 160.30274 * 9 8 7 34 34 H 1.09007 * 109.62811 * 39.72982 * 9 8 7 35 35 H 1.00896 * 110.99110 * 318.06936 * 12 10 9 36 36 H 1.09001 * 109.47094 * 179.97438 * 15 13 12 37 37 H 1.09003 * 109.46851 * 299.99715 * 15 13 12 38 38 H 1.09003 * 109.47532 * 59.99790 * 15 13 12 39 39 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 40 40 H 1.08994 * 108.81216 * 79.14662 * 24 10 9 41 41 H 1.09000 * 108.81443 * 197.42467 * 24 10 9 42 42 H 1.09003 * 108.87376 * 93.08557 * 25 5 3 43 43 H 1.09000 * 108.79860 * 334.59363 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9624 0.7743 -0.8831 7 6 4.1203 0.5981 1.2711 8 6 5.5212 0.2272 1.1364 9 6 6.4337 1.4497 0.9087 10 6 6.3500 1.8455 -0.5405 11 1 6.0903 0.9664 -1.1303 12 7 7.6641 2.3376 -0.9756 13 6 8.5556 1.2225 -1.3214 14 1 8.3574 0.3799 -0.6590 15 6 8.3067 0.8012 -2.7710 16 6 9.9896 1.6585 -1.1642 17 1 10.2160 2.6633 -0.8395 18 6 11.0125 0.7726 -1.4290 19 7 10.7368 -0.4511 -1.8241 20 14 12.7898 1.3108 -1.2268 21 1 13.0258 1.7207 0.1809 22 1 13.6910 0.1820 -1.5718 23 1 13.0657 2.4574 -2.1292 24 6 5.2985 2.9431 -0.7922 25 6 3.9971 2.7166 0.0011 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 4.0162 1.2853 2.1109 30 1 3.5369 -0.2996 1.4758 31 1 5.8391 -0.2865 2.0435 32 1 5.6264 -0.4539 0.2919 33 1 7.4625 1.1903 1.1587 34 1 6.0996 2.2775 1.5342 35 1 8.0802 2.9281 -0.2712 36 1 8.9685 -0.0259 -3.0278 37 1 7.2695 0.4859 -2.8847 38 1 8.5050 1.6438 -3.4335 39 1 11.4564 -1.0742 -2.0108 40 1 5.7208 3.9065 -0.5067 41 1 5.0625 2.9666 -1.8561 42 1 4.1508 3.0383 1.0312 43 1 3.2047 3.3200 -0.4418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172797175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:54 Heat of formation + Delta-G solvation = -121.317116 kcal Electronic energy + Delta-G solvation = -21598.005634 eV Core-core repulsion = 18448.729770 eV Total energy + Delta-G solvation = -3149.275863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.85074 -39.98650 -37.68315 -37.01002 -34.67907 -33.29426 -32.21397 -29.44448 -28.35374 -27.25121 -26.24260 -24.87895 -22.70079 -21.67894 -21.55966 -20.11911 -18.71636 -18.40485 -17.75351 -17.33487 -16.85035 -16.13411 -15.94310 -15.60956 -15.21026 -14.83806 -14.73310 -14.30420 -14.18785 -13.97875 -13.48063 -13.24770 -13.19338 -12.99824 -12.77682 -12.73240 -12.48172 -12.29938 -12.19046 -12.05721 -11.86377 -11.77846 -11.65548 -11.60521 -11.35513 -11.15129 -11.05339 -10.83611 -10.52643 -8.88749 -8.09976 -6.23220 1.12219 1.43572 1.45278 1.52582 1.74904 2.43605 3.18664 3.48359 3.60778 3.75066 3.79304 4.15817 4.19239 4.26334 4.29768 4.33415 4.39602 4.45338 4.48487 4.68909 4.71758 4.86469 4.89483 4.99168 5.03112 5.07869 5.13173 5.19837 5.23434 5.28014 5.30385 5.34218 5.39374 5.47456 5.55638 5.60850 5.74977 5.93061 6.27470 6.57052 6.69838 6.87817 7.09890 7.47195 8.95262 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.038200 B = 0.003849 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.815386 B = 7272.709999 C = 7385.414319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.472 3.528 4 O -0.534 6.534 5 C -0.078 4.078 6 H 0.110 0.890 7 C -0.094 4.094 8 C -0.110 4.110 9 C -0.141 4.141 10 C 0.088 3.912 11 H 0.053 0.947 12 N -0.690 5.690 13 C 0.220 3.780 14 H -0.023 1.023 15 C -0.114 4.114 16 C -0.537 4.537 17 H 0.057 0.943 18 C 0.014 3.986 19 N -0.917 5.917 20 Si 0.958 3.042 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.091 4.091 25 C -0.103 4.103 26 H 0.130 0.870 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.332 0.668 36 H 0.055 0.945 37 H 0.020 0.980 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.489 0.577 6.386 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.424 6.424 5 C -0.097 4.097 6 H 0.128 0.872 7 C -0.132 4.132 8 C -0.148 4.148 9 C -0.180 4.180 10 C -0.022 4.022 11 H 0.071 0.929 12 N -0.320 5.320 13 C 0.112 3.888 14 H -0.006 1.006 15 C -0.172 4.172 16 C -0.576 4.576 17 H 0.075 0.925 18 C -0.185 4.185 19 N -0.556 5.556 20 Si 0.784 3.216 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.129 4.129 25 C -0.141 4.141 26 H 0.148 0.852 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.149 0.851 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.828 0.792 5.668 18.724 hybrid contribution 1.152 -0.268 0.603 1.328 sum -16.675 0.524 6.271 17.823 Atomic orbital electron populations 1.23560 0.74882 1.05672 1.02548 1.86519 1.24950 1.32822 1.83556 1.23980 0.92427 0.81076 0.70817 1.90621 1.67722 1.37198 1.46863 1.20890 0.85902 1.00055 1.02879 0.87172 1.20394 0.96195 1.01470 0.95098 1.20349 0.94600 0.97430 1.02439 1.22078 0.99169 0.98930 0.97793 1.21428 0.90141 0.96818 0.93777 0.92890 1.60690 1.03522 1.21521 1.46256 1.18816 0.89994 0.87848 0.92157 1.00553 1.21561 0.97238 0.99881 0.98539 1.21600 0.92092 0.98280 1.45615 0.92482 1.25689 1.03100 0.94917 0.94790 1.70017 1.33311 1.05702 1.46575 0.85610 0.79612 0.77660 0.78706 1.19563 1.21049 1.19888 1.21745 0.92907 0.98589 0.99677 1.21296 0.97086 0.93551 1.02169 0.85182 0.91736 0.92076 0.90362 0.90005 0.90886 0.92995 0.93847 0.90205 0.85075 0.92648 0.96126 0.95757 0.92951 0.91275 0.92704 0.90450 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -7.62 10.20 -51.41 -0.52 -8.15 16 3 C 0.47 11.34 7.22 71.24 0.51 11.85 16 4 O -0.53 -15.21 15.04 21.96 0.33 -14.88 16 5 C -0.08 -1.78 2.31 -11.94 -0.03 -1.80 16 6 H 0.11 2.63 6.97 -2.38 -0.02 2.61 16 7 C -0.09 -1.93 4.67 28.73 0.13 -1.79 16 8 C -0.11 -2.74 5.26 28.74 0.15 -2.59 16 9 C -0.14 -4.16 4.79 30.19 0.14 -4.02 16 10 C 0.09 2.93 1.84 44.46 0.08 3.01 16 11 H 0.05 1.92 5.54 -2.39 -0.01 1.90 16 12 N -0.69 -28.48 5.93 -475.67 -2.82 -31.30 16 13 C 0.22 11.06 2.20 44.17 0.10 11.16 16 14 H -0.02 -1.26 7.15 -2.39 -0.02 -1.28 16 15 C -0.11 -5.72 9.18 71.98 0.66 -5.06 16 16 C -0.54 -29.38 8.59 25.60 0.22 -29.16 16 17 H 0.06 3.06 7.62 -2.91 -0.02 3.03 16 18 C 0.01 0.78 5.31 84.66 0.45 1.23 16 19 N -0.92 -52.63 11.33 21.45 0.24 -52.39 16 20 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 C -0.09 -2.51 5.45 31.32 0.17 -2.34 16 25 C -0.10 -2.43 4.69 30.14 0.14 -2.29 16 26 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 0.91 8.13 -2.38 -0.02 0.89 16 28 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 29 H 0.08 1.45 7.47 -2.38 -0.02 1.43 16 30 H 0.08 1.51 7.67 -2.39 -0.02 1.49 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.44 7.47 -2.39 -0.02 1.42 16 33 H 0.04 1.55 7.19 -2.39 -0.02 1.53 16 34 H 0.08 2.04 6.98 -2.38 -0.02 2.02 16 35 H 0.33 13.45 7.98 -89.70 -0.72 12.73 16 36 H 0.05 3.05 6.08 -2.39 -0.01 3.03 16 37 H 0.02 0.91 7.38 -2.39 -0.02 0.89 16 38 H 0.02 1.19 8.14 -2.39 -0.02 1.18 16 39 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 40 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.67 6.63 -2.39 -0.02 1.65 16 43 H 0.07 1.86 6.67 -2.39 -0.02 1.84 16 Total: -1.00 -62.60 329.50 3.47 -59.13 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.28 Total: 22.38 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 3.93 Total: -20.21 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -2.58 Total: -83.69 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.19 Total: -23.03 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -62.60 3.47 -59.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172797175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.189 kcal (2) G-P(sol) polarization free energy of solvation -62.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds