Wall clock time and date at job start Mon Mar 30 2020 01:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45189 * 109.47265 * 2 1 4 4 C 1.34234 * 117.00054 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99607 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00253 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.47306 * 180.02562 * 6 4 3 8 8 N 1.46896 * 109.47200 * 179.97438 * 7 6 4 9 9 C 1.46903 * 111.00418 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47667 * 205.00504 * 9 8 7 11 11 C 1.52997 * 109.47232 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.47296 * 59.99748 * 11 10 9 13 13 C 1.50700 * 109.47257 * 59.99902 * 12 11 10 14 14 H 1.07999 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47163 * 59.99902 * 17 15 13 19 19 H 1.48495 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47290 * 299.99897 * 17 15 13 21 21 C 1.53003 * 109.47195 * 299.99941 * 12 11 10 22 22 C 1.52994 * 109.46903 * 84.99606 * 9 8 7 23 23 H 1.08995 * 109.47250 * 300.00413 * 1 2 3 24 24 H 1.09004 * 109.47161 * 60.00151 * 1 2 3 25 25 H 1.09001 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46759 * 239.99410 * 2 1 3 27 27 H 1.09009 * 109.46472 * 119.99934 * 2 1 3 28 28 H 1.09009 * 109.46999 * 59.99892 * 6 4 3 29 29 H 1.09002 * 109.46992 * 300.00478 * 6 4 3 30 30 H 1.08995 * 109.46990 * 60.00102 * 7 6 4 31 31 H 1.09002 * 109.47484 * 300.00175 * 7 6 4 32 32 H 1.00896 * 111.00418 * 303.95553 * 8 7 6 33 33 H 1.09005 * 109.46638 * 325.00521 * 9 8 7 34 34 H 1.08998 * 109.46987 * 59.99359 * 10 9 8 35 35 H 1.09005 * 109.46648 * 300.00005 * 10 9 8 36 36 H 1.08996 * 109.46678 * 299.99615 * 11 10 9 37 37 H 1.09004 * 109.46869 * 179.97438 * 11 10 9 38 38 H 1.08997 * 109.47279 * 180.02562 * 12 11 10 39 39 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47453 * 180.02562 * 21 12 11 41 41 H 1.08996 * 109.47248 * 300.00419 * 21 12 11 42 42 H 1.08999 * 109.47824 * 300.01002 * 22 9 8 43 43 H 1.09005 * 109.46726 * 60.00969 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3688 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5864 0.0015 6 6 3.9209 2.9372 0.0000 7 6 5.4487 2.8571 0.0001 8 7 6.0102 4.2145 -0.0010 9 6 7.4788 4.1768 -0.0003 10 6 8.0220 5.4712 0.6083 11 6 9.5515 5.4321 0.6084 12 6 10.0582 5.2922 -0.8284 13 6 9.5858 6.4678 -1.6444 14 1 8.9839 7.2376 -1.1843 15 6 9.9211 6.5602 -2.9787 16 7 10.6577 5.6251 -3.5378 17 14 9.3361 8.0178 -3.9899 18 1 9.8643 9.2738 -3.3995 19 1 9.8278 7.8819 -5.3845 20 1 7.8516 8.0567 -3.9896 21 6 9.5150 3.9978 -1.4370 22 6 7.9860 4.0365 -1.4369 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.5845 3.4699 0.8896 29 1 3.5853 3.4689 -0.8905 30 1 5.7847 2.3246 -0.8896 31 1 5.7847 2.3253 0.8903 32 1 5.6624 4.7491 -0.7828 33 1 7.8201 3.3265 0.5901 34 1 7.6606 5.5711 1.6317 35 1 7.6806 6.3215 0.0178 36 1 9.8931 4.5818 1.1986 37 1 9.9384 6.3545 1.0416 38 1 11.1478 5.2639 -0.8283 39 1 10.8932 5.6900 -4.4765 40 1 9.8764 3.8979 -2.4605 41 1 9.8566 3.1475 -0.8468 42 1 7.5990 3.1144 -1.8705 43 1 7.6447 4.8869 -2.0274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173325036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:42 Heat of formation + Delta-G solvation = -116.359758 kcal Electronic energy + Delta-G solvation = -20877.325433 eV Core-core repulsion = 17728.264537 eV Total energy + Delta-G solvation = -3149.060896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61520 -38.27151 -36.92794 -35.16173 -32.55056 -32.00694 -30.71088 -29.47408 -27.56910 -24.83893 -23.92524 -22.60341 -21.42502 -20.83500 -20.51624 -18.67138 -17.84504 -16.97893 -16.41232 -15.90151 -15.25130 -14.90970 -14.47271 -14.28175 -13.86404 -13.56420 -13.23088 -13.08016 -13.04567 -12.59487 -12.33042 -12.06231 -11.91787 -11.75622 -11.36581 -11.24394 -11.09579 -10.95392 -10.83795 -10.77974 -10.59773 -10.55859 -10.28411 -10.04132 -9.63128 -9.14023 -8.95986 -8.66085 -8.27512 -7.86122 -5.93184 -3.97423 2.08710 2.45837 3.32531 3.38129 3.40385 4.38516 4.46852 4.60977 4.64817 4.69249 4.94123 4.95603 5.09196 5.36633 5.37258 5.43995 5.47844 5.61100 5.64361 5.81087 5.90640 5.98909 6.13354 6.27245 6.36322 6.49573 6.50172 6.57801 6.80378 6.81699 6.92097 7.12133 7.22807 7.34461 7.51027 7.60205 7.63274 7.74616 7.80846 7.98741 8.19964 8.53382 9.05302 9.65387 11.12662 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027137 B = 0.003485 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.566192 B = 8031.561604 C = 8420.406349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.361 6.361 4 C 0.464 3.536 5 O -0.508 6.508 6 C -0.112 4.112 7 C 0.070 3.930 8 N -0.689 5.689 9 C 0.094 3.906 10 C -0.091 4.091 11 C -0.108 4.108 12 C 0.043 3.957 13 C -0.499 4.499 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.885 3.115 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.104 4.104 22 C -0.127 4.127 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.340 0.660 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.047 0.953 38 H 0.023 0.977 39 H 0.258 0.742 40 H 0.089 0.911 41 H 0.013 0.987 42 H 0.028 0.972 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.911 -7.987 6.531 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.278 6.278 4 C 0.307 3.693 5 O -0.395 6.395 6 C -0.150 4.150 7 C -0.060 4.060 8 N -0.319 5.319 9 C -0.014 4.014 10 C -0.129 4.129 11 C -0.146 4.146 12 C 0.024 3.976 13 C -0.537 4.537 14 H 0.073 0.927 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.713 3.287 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.204 1.204 21 C -0.143 4.143 22 C -0.166 4.166 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.132 0.868 29 H 0.123 0.877 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.031 0.969 42 H 0.047 0.953 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.683 -8.283 7.049 19.916 hybrid contribution -0.140 0.259 -1.654 1.680 sum -16.824 -8.024 5.395 19.404 Atomic orbital electron populations 1.21806 0.92648 1.02929 1.03558 1.23013 0.95339 0.80377 1.02625 1.86513 1.24850 1.32298 1.84186 1.23844 0.80366 0.93027 0.72094 1.90684 1.60343 1.43367 1.45135 1.21384 0.96984 0.90265 1.06330 1.21695 0.90581 0.91633 1.02079 1.60676 1.08834 1.12508 1.49844 1.21591 0.84430 0.98587 0.96841 1.21338 0.95816 0.97090 0.98653 1.21563 0.94626 0.98884 0.99520 1.18693 0.95677 0.93584 0.89608 1.21128 1.32024 1.06289 0.94300 0.92685 1.24956 0.95308 0.95851 0.97986 1.69870 1.37672 1.33359 1.12263 0.86780 0.79041 0.83542 0.79341 1.20413 1.21524 1.20393 1.21445 0.92751 0.96766 1.03339 1.22011 0.99087 0.99796 0.95658 0.91449 0.91451 0.90289 0.91253 0.91250 0.86825 0.87738 0.94264 0.90472 0.84252 0.91941 0.93936 0.91246 0.94928 0.93438 0.95869 0.93171 0.89244 0.96857 0.95326 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.53 16 2 C 0.06 0.53 6.18 37.16 0.23 0.76 16 3 O -0.36 -3.96 10.22 -39.27 -0.40 -4.36 16 4 C 0.46 5.74 7.96 36.00 0.29 6.02 16 5 O -0.51 -7.81 15.73 -18.75 -0.29 -8.10 16 6 C -0.11 -1.21 6.07 -27.89 -0.17 -1.38 16 7 C 0.07 0.96 4.77 -3.83 -0.02 0.94 16 8 N -0.69 -10.42 6.25 -106.73 -0.67 -11.08 16 9 C 0.09 1.70 2.47 -67.71 -0.17 1.53 16 10 C -0.09 -1.72 5.30 -26.73 -0.14 -1.87 16 11 C -0.11 -2.24 5.41 -26.74 -0.14 -2.38 16 12 C 0.04 1.05 2.58 -91.77 -0.24 0.81 16 13 C -0.50 -13.12 6.61 -34.44 -0.23 -13.35 16 14 H 0.05 1.44 6.71 -52.49 -0.35 1.08 16 15 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 16 N -0.89 -25.23 11.33 55.43 0.63 -24.60 16 17 Si 0.88 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 C -0.10 -2.45 5.23 -26.75 -0.14 -2.59 16 22 C -0.13 -2.61 4.95 -26.76 -0.13 -2.74 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 27 H 0.07 0.60 8.13 -51.92 -0.42 0.18 16 28 H 0.11 1.08 8.14 -51.92 -0.42 0.65 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.60 7.39 -51.93 -0.38 0.21 16 31 H 0.08 1.12 8.01 -51.93 -0.42 0.70 16 32 H 0.34 4.97 8.47 -39.29 -0.33 4.64 16 33 H 0.06 1.14 7.80 -51.93 -0.40 0.74 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.09 2.37 6.08 -51.93 -0.32 2.05 16 41 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.03 0.56 7.45 -51.93 -0.39 0.17 16 43 H 0.07 1.64 7.20 -51.93 -0.37 1.26 16 LS Contribution 339.26 15.07 5.11 5.11 Total: -1.00 -29.14 339.26 -8.74 -37.87 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.52 Total: 2.44 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.57 Total: -13.25 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.04 Total: -35.68 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.70 Total: -12.46 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.14 -8.74 -37.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.485 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds