Wall clock time and date at job start Mon Mar 30 2020 01:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45189 * 109.47265 * 2 1 4 4 C 1.34234 * 117.00054 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99607 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00253 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.47306 * 180.02562 * 6 4 3 8 8 N 1.46896 * 109.47200 * 179.97438 * 7 6 4 9 9 C 1.46903 * 111.00418 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47667 * 205.00504 * 9 8 7 11 11 C 1.52997 * 109.47232 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.47296 * 59.99748 * 11 10 9 13 13 C 1.50700 * 109.47257 * 59.99902 * 12 11 10 14 14 H 1.07999 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47163 * 59.99902 * 17 15 13 19 19 H 1.48495 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47290 * 299.99897 * 17 15 13 21 21 C 1.53003 * 109.47195 * 299.99941 * 12 11 10 22 22 C 1.52994 * 109.46903 * 84.99606 * 9 8 7 23 23 H 1.08995 * 109.47250 * 300.00413 * 1 2 3 24 24 H 1.09004 * 109.47161 * 60.00151 * 1 2 3 25 25 H 1.09001 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46759 * 239.99410 * 2 1 3 27 27 H 1.09009 * 109.46472 * 119.99934 * 2 1 3 28 28 H 1.09009 * 109.46999 * 59.99892 * 6 4 3 29 29 H 1.09002 * 109.46992 * 300.00478 * 6 4 3 30 30 H 1.08995 * 109.46990 * 60.00102 * 7 6 4 31 31 H 1.09002 * 109.47484 * 300.00175 * 7 6 4 32 32 H 1.00896 * 111.00418 * 303.95553 * 8 7 6 33 33 H 1.09005 * 109.46638 * 325.00521 * 9 8 7 34 34 H 1.08998 * 109.46987 * 59.99359 * 10 9 8 35 35 H 1.09005 * 109.46648 * 300.00005 * 10 9 8 36 36 H 1.08996 * 109.46678 * 299.99615 * 11 10 9 37 37 H 1.09004 * 109.46869 * 179.97438 * 11 10 9 38 38 H 1.08997 * 109.47279 * 180.02562 * 12 11 10 39 39 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47453 * 180.02562 * 21 12 11 41 41 H 1.08996 * 109.47248 * 300.00419 * 21 12 11 42 42 H 1.08999 * 109.47824 * 300.01002 * 22 9 8 43 43 H 1.09005 * 109.46726 * 60.00969 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3688 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5864 0.0015 6 6 3.9209 2.9372 0.0000 7 6 5.4487 2.8571 0.0001 8 7 6.0102 4.2145 -0.0010 9 6 7.4788 4.1768 -0.0003 10 6 8.0220 5.4712 0.6083 11 6 9.5515 5.4321 0.6084 12 6 10.0582 5.2922 -0.8284 13 6 9.5858 6.4678 -1.6444 14 1 8.9839 7.2376 -1.1843 15 6 9.9211 6.5602 -2.9787 16 7 10.6577 5.6251 -3.5378 17 14 9.3361 8.0178 -3.9899 18 1 9.8643 9.2738 -3.3995 19 1 9.8278 7.8819 -5.3845 20 1 7.8516 8.0567 -3.9896 21 6 9.5150 3.9978 -1.4370 22 6 7.9860 4.0365 -1.4369 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.5845 3.4699 0.8896 29 1 3.5853 3.4689 -0.8905 30 1 5.7847 2.3246 -0.8896 31 1 5.7847 2.3253 0.8903 32 1 5.6624 4.7491 -0.7828 33 1 7.8201 3.3265 0.5901 34 1 7.6606 5.5711 1.6317 35 1 7.6806 6.3215 0.0178 36 1 9.8931 4.5818 1.1986 37 1 9.9384 6.3545 1.0416 38 1 11.1478 5.2639 -0.8283 39 1 10.8932 5.6900 -4.4765 40 1 9.8764 3.8979 -2.4605 41 1 9.8566 3.1475 -0.8468 42 1 7.5990 3.1144 -1.8705 43 1 7.6447 4.8869 -2.0274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173325036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:42 Heat of formation + Delta-G solvation = -133.030051 kcal Electronic energy + Delta-G solvation = -20878.048311 eV Core-core repulsion = 17728.264537 eV Total energy + Delta-G solvation = -3149.783774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.55683 -39.85130 -37.89369 -36.57637 -34.26309 -32.88493 -31.96143 -31.20254 -29.07586 -26.67724 -24.96046 -23.51056 -23.08243 -22.22122 -21.68811 -20.46825 -18.78559 -17.90684 -17.75760 -17.36296 -16.77111 -16.31334 -16.00797 -15.46498 -15.13962 -14.92446 -14.63764 -14.37882 -14.25105 -13.69030 -13.53577 -13.23870 -13.13346 -12.89481 -12.80693 -12.65857 -12.54923 -12.45609 -12.44366 -12.29251 -12.11993 -11.72692 -11.58287 -11.54103 -11.44440 -10.92835 -10.71521 -10.57896 -10.30333 -9.25025 -8.00492 -6.10886 1.14262 1.44013 1.44935 1.51647 1.62624 2.47901 3.26949 3.27854 3.70183 3.96550 3.99880 4.07334 4.10085 4.12813 4.27606 4.34409 4.50404 4.55666 4.71924 4.73160 4.81445 4.84921 4.88595 4.90604 4.92361 4.99778 5.03529 5.14750 5.15862 5.29171 5.45147 5.47349 5.58492 5.60219 5.66608 5.75162 5.97300 6.14609 6.23367 6.47075 6.52863 6.69892 6.99585 7.55061 9.04144 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027137 B = 0.003485 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.566192 B = 8031.561604 C = 8420.406349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.361 6.361 4 C 0.467 3.533 5 O -0.545 6.545 6 C -0.102 4.102 7 C 0.073 3.927 8 N -0.677 5.677 9 C 0.104 3.896 10 C -0.083 4.083 11 C -0.103 4.103 12 C 0.037 3.963 13 C -0.502 4.502 14 H 0.057 0.943 15 C 0.010 3.990 16 N -0.923 5.923 17 Si 0.944 3.056 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.267 1.267 21 C -0.102 4.102 22 C -0.115 4.115 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.135 0.865 29 H 0.125 0.875 30 H 0.022 0.978 31 H 0.070 0.930 32 H 0.345 0.655 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.048 0.952 38 H -0.015 1.015 39 H 0.256 0.744 40 H 0.054 0.946 41 H 0.021 0.979 42 H 0.034 0.966 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.368 -7.481 7.463 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.311 3.689 5 O -0.435 6.435 6 C -0.140 4.140 7 C -0.057 4.057 8 N -0.307 5.307 9 C -0.005 4.005 10 C -0.121 4.121 11 C -0.142 4.142 12 C 0.019 3.981 13 C -0.540 4.540 14 H 0.075 0.925 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.770 3.230 18 H -0.200 1.200 19 H -0.218 1.218 20 H -0.192 1.192 21 C -0.140 4.140 22 C -0.154 4.154 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.143 0.857 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.164 0.836 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.004 0.996 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.053 0.947 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.176 -7.763 7.993 22.179 hybrid contribution 0.639 0.045 -1.929 2.032 sum -18.538 -7.718 6.064 20.976 Atomic orbital electron populations 1.21822 0.90305 1.04347 1.03805 1.23286 0.97178 0.79340 1.02430 1.86512 1.23954 1.33613 1.83659 1.24099 0.80614 0.93126 0.71020 1.90676 1.61183 1.44604 1.47027 1.21318 0.94607 0.89761 1.08302 1.21641 0.92687 0.90386 1.00952 1.60625 1.06755 1.13320 1.49972 1.21387 0.86263 0.98261 0.94628 1.21246 0.94165 0.96855 0.99849 1.21480 0.96174 0.99602 0.96894 1.18700 0.93526 0.93714 0.92201 1.21388 1.31443 1.06656 0.94555 0.92473 1.25677 0.95616 0.98188 0.99243 1.70032 1.38978 1.35062 1.12260 0.85830 0.79045 0.80548 0.77561 1.19994 1.21848 1.19238 1.21319 0.94909 0.96585 1.01223 1.21872 0.96818 0.99188 0.97568 0.91064 0.91279 0.88307 0.91665 0.91360 0.84728 0.85723 0.95970 0.91154 0.83617 0.91654 0.91542 0.92603 0.93510 0.93311 0.99643 0.93531 0.92729 0.96017 0.94692 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 71.98 0.74 -0.70 16 2 C 0.05 0.83 6.18 71.98 0.45 1.28 16 3 O -0.36 -7.27 10.22 -51.46 -0.53 -7.80 16 4 C 0.47 10.82 7.96 71.24 0.57 11.38 16 5 O -0.54 -16.40 15.73 21.96 0.35 -16.06 16 6 C -0.10 -1.94 6.07 29.85 0.18 -1.76 16 7 C 0.07 1.87 4.77 86.30 0.41 2.28 16 8 N -0.68 -18.80 6.25 -491.59 -3.07 -21.88 16 9 C 0.10 3.57 2.47 44.91 0.11 3.68 16 10 C -0.08 -2.97 5.30 30.59 0.16 -2.81 16 11 C -0.10 -4.18 5.41 30.59 0.17 -4.02 16 12 C 0.04 1.84 2.58 -11.54 -0.03 1.81 16 13 C -0.50 -26.57 6.61 25.60 0.17 -26.40 16 14 H 0.06 2.95 6.71 -2.91 -0.02 2.93 16 15 C 0.01 0.56 5.30 84.66 0.45 1.00 16 16 N -0.92 -53.56 11.33 21.45 0.24 -53.32 16 17 Si 0.94 43.14 29.54 68.60 2.03 45.17 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 C -0.10 -4.84 5.23 30.58 0.16 -4.68 16 22 C -0.12 -4.71 4.95 30.58 0.15 -4.56 16 23 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 25 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 27 H 0.07 1.12 8.13 -2.38 -0.02 1.10 16 28 H 0.13 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.02 0.65 7.39 -2.39 -0.02 0.63 16 31 H 0.07 1.92 8.01 -2.39 -0.02 1.90 16 32 H 0.35 9.22 8.47 -89.70 -0.76 8.46 16 33 H 0.07 2.24 7.80 -2.38 -0.02 2.23 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 2.16 6.62 -2.38 -0.02 2.14 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 38 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.05 2.99 6.08 -2.39 -0.01 2.97 16 41 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.03 1.35 7.45 -2.39 -0.02 1.34 16 43 H 0.05 2.36 7.20 -2.38 -0.02 2.34 16 Total: -1.00 -63.29 339.26 2.92 -60.37 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.22 Total: 17.00 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 3.68 Total: -23.49 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -2.83 Total: -75.20 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.18 Total: -23.85 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -63.29 2.92 -60.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.660 kcal (2) G-P(sol) polarization free energy of solvation -63.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds