Wall clock time and date at job start Mon Mar 30 2020 01:37:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 O 1.45199 * 109.46860 * 2 1
4 4 C 1.34224 * 116.99767 * 179.97438 * 3 2 1
5 5 O 1.20826 * 120.00568 * 0.02562 * 4 3 2
6 6 C 1.50706 * 119.99901 * 179.97438 * 4 3 2
7 7 H 1.09004 * 109.47106 * 60.00319 * 6 4 3
8 8 C 1.52998 * 109.47148 * 300.00350 * 6 4 3
9 9 N 1.46900 * 109.46926 * 180.02562 * 6 4 3
10 10 C 1.46909 * 110.99705 * 205.00238 * 9 6 4
11 11 C 1.53002 * 109.46750 * 204.99952 * 10 9 6
12 12 C 1.52997 * 109.46817 * 179.97438 * 11 10 9
13 13 C 1.53006 * 109.47127 * 60.00361 * 12 11 10
14 14 C 1.50697 * 109.47239 * 59.99504 * 13 12 11
15 15 H 1.07998 * 120.00039 * 0.02562 * 14 13 12
16 16 C 1.37881 * 120.00021 * 179.97438 * 14 13 12
17 17 N 1.31512 * 119.99560 * 0.02562 * 16 14 13
18 18 Si 1.86792 * 120.00122 * 180.02562 * 16 14 13
19 19 H 1.48506 * 109.47271 * 0.02562 * 18 16 14
20 20 H 1.48496 * 109.47166 * 120.00199 * 18 16 14
21 21 H 1.48494 * 109.47366 * 240.00615 * 18 16 14
22 22 C 1.52999 * 109.46626 * 299.99539 * 13 12 11
23 23 C 1.52996 * 109.47268 * 85.00275 * 10 9 6
24 24 H 1.08994 * 109.47238 * 300.00047 * 1 2 3
25 25 H 1.09004 * 109.46751 * 59.99943 * 1 2 3
26 26 H 1.09004 * 109.46956 * 179.97438 * 1 2 3
27 27 H 1.09001 * 109.47083 * 240.00277 * 2 1 3
28 28 H 1.08991 * 109.46926 * 119.99782 * 2 1 3
29 29 H 1.08994 * 109.47407 * 60.00194 * 8 6 4
30 30 H 1.09008 * 109.46570 * 179.97438 * 8 6 4
31 31 H 1.08993 * 109.46908 * 299.99245 * 8 6 4
32 32 H 1.00899 * 111.00149 * 328.95164 * 9 6 4
33 33 H 1.08996 * 109.46883 * 324.99928 * 10 9 6
34 34 H 1.09002 * 109.47070 * 60.00054 * 11 10 9
35 35 H 1.08996 * 109.47407 * 299.99654 * 11 10 9
36 36 H 1.09001 * 109.47502 * 300.00518 * 12 11 10
37 37 H 1.09001 * 109.47289 * 180.02562 * 12 11 10
38 38 H 1.09000 * 109.47050 * 179.97438 * 13 12 11
39 39 H 0.97002 * 119.99397 * 180.02562 * 17 16 14
40 40 H 1.09002 * 109.46719 * 180.02562 * 22 13 12
41 41 H 1.08993 * 109.47839 * 299.99931 * 22 13 12
42 42 H 1.09001 * 109.46993 * 300.00132 * 23 10 9
43 43 H 1.09000 * 109.47380 * 59.99238 * 23 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0808 0.5867 0.0005
6 6 3.9207 2.9375 0.0000
7 1 3.5843 3.4702 0.8896
8 6 3.4496 3.6837 -1.2499
9 7 5.3877 2.8606 0.0001
10 6 5.9784 4.0746 0.5793
11 6 7.3936 4.2651 0.0300
12 6 8.0086 5.5297 0.6328
13 6 8.0667 5.3927 2.1556
14 6 8.9121 4.1998 2.5207
15 1 9.3631 3.5997 1.7444
16 6 9.1105 3.8752 3.8460
17 7 8.5616 4.6064 4.7913
18 14 10.1589 2.3970 4.2987
19 1 10.6583 1.7465 3.0606
20 1 11.3112 2.8413 5.1232
21 1 9.3412 1.4283 5.0719
22 6 6.6515 5.2023 2.7048
23 6 6.0366 3.9370 2.1020
24 1 -0.3633 0.5138 0.8899
25 1 -0.3633 0.5139 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 1.8934 -0.5138 -0.8900
28 1 1.8933 -0.5138 0.8899
29 1 2.3612 3.7408 -1.2504
30 1 3.8659 4.6912 -1.2499
31 1 3.7861 3.1512 -2.1393
32 1 5.7065 2.0360 0.4863
33 1 5.3670 4.9375 0.3156
34 1 7.3522 4.3631 -1.0548
35 1 8.0050 3.4021 0.2938
36 1 7.3971 6.3926 0.3687
37 1 9.0167 5.6658 0.2412
38 1 8.5053 6.2935 2.5849
39 1 8.7015 4.3782 5.7237
40 1 6.6928 5.1051 3.7897
41 1 6.0400 6.0650 2.4407
42 1 5.0283 3.8012 2.4933
43 1 6.6478 3.0739 2.3658
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001173328155.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:37:46
Heat of formation + Delta-G solvation = -110.108005 kcal
Electronic energy + Delta-G solvation = -21595.395771 eV
Core-core repulsion = 18446.605971 eV
Total energy + Delta-G solvation = -3148.789800 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.62423 -38.33430 -36.77439 -35.17375 -32.49560 -31.85449 -30.39426 -29.48961
-27.33556 -25.08841 -24.42492 -22.82611 -21.48383 -20.83804 -20.16978 -18.81469
-17.64884 -16.79571 -16.71346 -15.64693 -15.12364 -14.79735 -14.39512 -14.31314
-13.60847 -13.51677 -13.11937 -13.01736 -12.76396 -12.41364 -12.28057 -12.10711
-12.04926 -11.77009 -11.50628 -11.29846 -11.22854 -10.99032 -10.87307 -10.68437
-10.51250 -10.29735 -10.27912 -10.05351 -9.67113 -9.18871 -8.99318 -8.65983
-8.29539 -7.94227 -5.93888 -3.97770 2.19044 2.52261 3.31750 3.40580
3.44877 4.39377 4.48075 4.56607 4.69950 4.77389 5.04087 5.09750
5.16205 5.36839 5.42899 5.52529 5.57274 5.69059 5.71359 5.76522
5.84625 6.05861 6.16373 6.31955 6.35552 6.43279 6.45907 6.54253
6.75806 6.77251 6.89956 7.08120 7.20752 7.30720 7.47093 7.57856
7.65284 7.76907 7.80425 7.96924 8.18517 8.52834 9.05433 9.65681
11.11930
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.021868 B = 0.004701 C = 0.004240
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1280.126828 B = 5955.165977 C = 6601.461878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.060 3.940
3 O -0.358 6.358
4 C 0.462 3.538
5 O -0.499 6.499
6 C 0.093 3.907
7 H 0.082 0.918
8 C -0.133 4.133
9 N -0.673 5.673
10 C 0.093 3.907
11 C -0.090 4.090
12 C -0.107 4.107
13 C 0.043 3.957
14 C -0.499 4.499
15 H 0.056 0.944
16 C 0.060 3.940
17 N -0.892 5.892
18 Si 0.883 3.117
19 H -0.273 1.273
20 H -0.286 1.286
21 H -0.286 1.286
22 C -0.103 4.103
23 C -0.129 4.129
24 H 0.066 0.934
25 H 0.066 0.934
26 H 0.078 0.922
27 H 0.069 0.931
28 H 0.069 0.931
29 H 0.065 0.935
30 H 0.072 0.928
31 H 0.064 0.936
32 H 0.354 0.646
33 H 0.066 0.934
34 H 0.044 0.956
35 H 0.070 0.930
36 H 0.032 0.968
37 H 0.048 0.952
38 H 0.024 0.976
39 H 0.257 0.743
40 H 0.090 0.910
41 H 0.014 0.986
42 H 0.026 0.974
43 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.707 -4.107 -9.411 17.937
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.014 4.014
3 O -0.275 6.275
4 C 0.304 3.696
5 O -0.385 6.385
6 C -0.018 4.018
7 H 0.100 0.900
8 C -0.191 4.191
9 N -0.308 5.308
10 C -0.015 4.015
11 C -0.128 4.128
12 C -0.145 4.145
13 C 0.024 3.976
14 C -0.537 4.537
15 H 0.075 0.925
16 C -0.140 4.140
17 N -0.532 5.532
18 Si 0.711 3.289
19 H -0.198 1.198
20 H -0.212 1.212
21 H -0.212 1.212
22 C -0.142 4.142
23 C -0.168 4.168
24 H 0.086 0.914
25 H 0.085 0.915
26 H 0.097 0.903
27 H 0.087 0.913
28 H 0.087 0.913
29 H 0.084 0.916
30 H 0.091 0.909
31 H 0.083 0.917
32 H 0.176 0.824
33 H 0.084 0.916
34 H 0.062 0.938
35 H 0.089 0.911
36 H 0.051 0.949
37 H 0.066 0.934
38 H 0.042 0.958
39 H 0.067 0.933
40 H 0.108 0.892
41 H 0.032 0.968
42 H 0.045 0.955
43 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -14.470 -4.232 -9.876 18.023
hybrid contribution 0.389 -1.229 1.426 1.922
sum -14.081 -5.461 -8.449 17.306
Atomic orbital electron populations
1.21800 0.92651 1.02878 1.03528 1.23017 0.95311 0.80426 1.02631
1.86499 1.24623 1.32214 1.84162 1.23947 0.80525 0.93003 0.72106
1.90663 1.60225 1.42864 1.44732 1.21192 0.90783 0.88770 1.01022
0.90028 1.21737 1.00573 1.00753 0.96024 1.60849 1.02173 1.07071
1.60738 1.21708 0.96164 0.90165 0.93499 1.21323 0.94227 0.99767
0.97527 1.21563 0.98419 0.95161 0.99345 1.18700 0.92815 0.97059
0.89008 1.21223 1.29346 1.11671 0.91504 0.92532 1.24940 0.95875
0.96474 0.96753 1.69881 1.44582 1.39003 0.99706 0.86678 0.80448
0.83248 0.78527 1.19761 1.21194 1.21247 1.21457 0.96583 0.92702
1.03449 1.22071 0.98191 1.02227 0.94310 0.91443 0.91480 0.90325
0.91252 0.91260 0.91650 0.90936 0.91660 0.82410 0.91581 0.93756
0.91142 0.94875 0.93362 0.95807 0.93301 0.89180 0.96772 0.95482
0.90779
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.06 10.29 37.16 0.38 -0.68 16
2 C 0.06 0.61 6.19 37.16 0.23 0.84 16
3 O -0.36 -4.50 10.12 -39.24 -0.40 -4.89 16
4 C 0.46 6.76 7.28 36.01 0.26 7.03 16
5 O -0.50 -8.64 15.40 -18.75 -0.29 -8.93 16
6 C 0.09 1.31 2.94 -68.86 -0.20 1.11 16
7 H 0.08 1.12 7.12 -51.93 -0.37 0.75 16
8 C -0.13 -1.54 9.33 37.16 0.35 -1.19 16
9 N -0.67 -11.08 5.93 -100.95 -0.60 -11.67 16
10 C 0.09 1.65 2.28 -67.71 -0.15 1.50 16
11 C -0.09 -1.72 5.30 -26.73 -0.14 -1.86 16
12 C -0.11 -2.18 5.41 -26.73 -0.14 -2.32 16
13 C 0.04 1.03 2.59 -91.77 -0.24 0.79 16
14 C -0.50 -13.22 6.61 -34.44 -0.23 -13.45 16
15 H 0.06 1.51 6.71 -52.49 -0.35 1.15 16
16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16
17 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16
18 Si 0.88 21.36 29.54 -169.99 -5.02 16.34 16
19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16
20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
22 C -0.10 -2.37 5.24 -26.71 -0.14 -2.51 16
23 C -0.13 -2.64 4.94 -26.71 -0.13 -2.77 16
24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16
26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
27 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16
28 H 0.07 0.72 8.13 -51.93 -0.42 0.29 16
29 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16
30 H 0.07 0.82 7.43 -51.92 -0.39 0.44 16
31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
32 H 0.35 6.38 7.19 -39.29 -0.28 6.10 16
33 H 0.07 1.11 7.11 -51.93 -0.37 0.74 16
34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16
35 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16
36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16
37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
38 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16
39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16
40 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16
41 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16
42 H 0.03 0.51 7.43 -51.93 -0.39 0.12 16
43 H 0.07 1.71 7.21 -51.93 -0.37 1.33 16
LS Contribution 336.17 15.07 5.07 5.07
Total: -1.00 -28.79 336.17 -8.25 -37.04
By element:
Atomic # 1 Polarization: 10.99 SS G_CDS: -7.38 Total: 3.61 kcal
Atomic # 6 Polarization: -11.74 SS G_CDS: -0.25 Total: -11.99 kcal
Atomic # 7 Polarization: -36.27 SS G_CDS: 0.03 Total: -36.24 kcal
Atomic # 8 Polarization: -13.13 SS G_CDS: -0.69 Total: -13.82 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal
Total LS contribution 5.07 Total: 5.07 kcal
Total: -28.79 -8.25 -37.04 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173328155.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -73.066 kcal
(2) G-P(sol) polarization free energy of solvation -28.792 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.859 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.108 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds