Wall clock time and date at job start Mon Mar 30 2020 01:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.46860 * 2 1 4 4 C 1.34224 * 116.99767 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00568 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99901 * 179.97438 * 4 3 2 7 7 H 1.09004 * 109.47106 * 60.00319 * 6 4 3 8 8 C 1.52998 * 109.47148 * 300.00350 * 6 4 3 9 9 N 1.46900 * 109.46926 * 180.02562 * 6 4 3 10 10 C 1.46909 * 110.99705 * 205.00238 * 9 6 4 11 11 C 1.53002 * 109.46750 * 204.99952 * 10 9 6 12 12 C 1.52997 * 109.46817 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47127 * 60.00361 * 12 11 10 14 14 C 1.50697 * 109.47239 * 59.99504 * 13 12 11 15 15 H 1.07998 * 120.00039 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00021 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99560 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47271 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47166 * 120.00199 * 18 16 14 21 21 H 1.48494 * 109.47366 * 240.00615 * 18 16 14 22 22 C 1.52999 * 109.46626 * 299.99539 * 13 12 11 23 23 C 1.52996 * 109.47268 * 85.00275 * 10 9 6 24 24 H 1.08994 * 109.47238 * 300.00047 * 1 2 3 25 25 H 1.09004 * 109.46751 * 59.99943 * 1 2 3 26 26 H 1.09004 * 109.46956 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47083 * 240.00277 * 2 1 3 28 28 H 1.08991 * 109.46926 * 119.99782 * 2 1 3 29 29 H 1.08994 * 109.47407 * 60.00194 * 8 6 4 30 30 H 1.09008 * 109.46570 * 179.97438 * 8 6 4 31 31 H 1.08993 * 109.46908 * 299.99245 * 8 6 4 32 32 H 1.00899 * 111.00149 * 328.95164 * 9 6 4 33 33 H 1.08996 * 109.46883 * 324.99928 * 10 9 6 34 34 H 1.09002 * 109.47070 * 60.00054 * 11 10 9 35 35 H 1.08996 * 109.47407 * 299.99654 * 11 10 9 36 36 H 1.09001 * 109.47502 * 300.00518 * 12 11 10 37 37 H 1.09001 * 109.47289 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.47050 * 179.97438 * 13 12 11 39 39 H 0.97002 * 119.99397 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.46719 * 180.02562 * 22 13 12 41 41 H 1.08993 * 109.47839 * 299.99931 * 22 13 12 42 42 H 1.09001 * 109.46993 * 300.00132 * 23 10 9 43 43 H 1.09000 * 109.47380 * 59.99238 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5843 3.4702 0.8896 8 6 3.4496 3.6837 -1.2499 9 7 5.3877 2.8606 0.0001 10 6 5.9784 4.0746 0.5793 11 6 7.3936 4.2651 0.0300 12 6 8.0086 5.5297 0.6328 13 6 8.0667 5.3927 2.1556 14 6 8.9121 4.1998 2.5207 15 1 9.3631 3.5997 1.7444 16 6 9.1105 3.8752 3.8460 17 7 8.5616 4.6064 4.7913 18 14 10.1589 2.3970 4.2987 19 1 10.6583 1.7465 3.0606 20 1 11.3112 2.8413 5.1232 21 1 9.3412 1.4283 5.0719 22 6 6.6515 5.2023 2.7048 23 6 6.0366 3.9370 2.1020 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.3612 3.7408 -1.2504 30 1 3.8659 4.6912 -1.2499 31 1 3.7861 3.1512 -2.1393 32 1 5.7065 2.0360 0.4863 33 1 5.3670 4.9375 0.3156 34 1 7.3522 4.3631 -1.0548 35 1 8.0050 3.4021 0.2938 36 1 7.3971 6.3926 0.3687 37 1 9.0167 5.6658 0.2412 38 1 8.5053 6.2935 2.5849 39 1 8.7015 4.3782 5.7237 40 1 6.6928 5.1051 3.7897 41 1 6.0400 6.0650 2.4407 42 1 5.0283 3.8012 2.4933 43 1 6.6478 3.0739 2.3658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:46 Heat of formation + Delta-G solvation = -110.108005 kcal Electronic energy + Delta-G solvation = -21595.395771 eV Core-core repulsion = 18446.605971 eV Total energy + Delta-G solvation = -3148.789800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.62423 -38.33430 -36.77439 -35.17375 -32.49560 -31.85449 -30.39426 -29.48961 -27.33556 -25.08841 -24.42492 -22.82611 -21.48383 -20.83804 -20.16978 -18.81469 -17.64884 -16.79571 -16.71346 -15.64693 -15.12364 -14.79735 -14.39512 -14.31314 -13.60847 -13.51677 -13.11937 -13.01736 -12.76396 -12.41364 -12.28057 -12.10711 -12.04926 -11.77009 -11.50628 -11.29846 -11.22854 -10.99032 -10.87307 -10.68437 -10.51250 -10.29735 -10.27912 -10.05351 -9.67113 -9.18871 -8.99318 -8.65983 -8.29539 -7.94227 -5.93888 -3.97770 2.19044 2.52261 3.31750 3.40580 3.44877 4.39377 4.48075 4.56607 4.69950 4.77389 5.04087 5.09750 5.16205 5.36839 5.42899 5.52529 5.57274 5.69059 5.71359 5.76522 5.84625 6.05861 6.16373 6.31955 6.35552 6.43279 6.45907 6.54253 6.75806 6.77251 6.89956 7.08120 7.20752 7.30720 7.47093 7.57856 7.65284 7.76907 7.80425 7.96924 8.18517 8.52834 9.05433 9.65681 11.11930 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021868 B = 0.004701 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.126828 B = 5955.165977 C = 6601.461878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.462 3.538 5 O -0.499 6.499 6 C 0.093 3.907 7 H 0.082 0.918 8 C -0.133 4.133 9 N -0.673 5.673 10 C 0.093 3.907 11 C -0.090 4.090 12 C -0.107 4.107 13 C 0.043 3.957 14 C -0.499 4.499 15 H 0.056 0.944 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.883 3.117 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.286 1.286 22 C -0.103 4.103 23 C -0.129 4.129 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.354 0.646 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.032 0.968 37 H 0.048 0.952 38 H 0.024 0.976 39 H 0.257 0.743 40 H 0.090 0.910 41 H 0.014 0.986 42 H 0.026 0.974 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.707 -4.107 -9.411 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.304 3.696 5 O -0.385 6.385 6 C -0.018 4.018 7 H 0.100 0.900 8 C -0.191 4.191 9 N -0.308 5.308 10 C -0.015 4.015 11 C -0.128 4.128 12 C -0.145 4.145 13 C 0.024 3.976 14 C -0.537 4.537 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.711 3.289 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.142 4.142 23 C -0.168 4.168 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.176 0.824 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.032 0.968 42 H 0.045 0.955 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.470 -4.232 -9.876 18.023 hybrid contribution 0.389 -1.229 1.426 1.922 sum -14.081 -5.461 -8.449 17.306 Atomic orbital electron populations 1.21800 0.92651 1.02878 1.03528 1.23017 0.95311 0.80426 1.02631 1.86499 1.24623 1.32214 1.84162 1.23947 0.80525 0.93003 0.72106 1.90663 1.60225 1.42864 1.44732 1.21192 0.90783 0.88770 1.01022 0.90028 1.21737 1.00573 1.00753 0.96024 1.60849 1.02173 1.07071 1.60738 1.21708 0.96164 0.90165 0.93499 1.21323 0.94227 0.99767 0.97527 1.21563 0.98419 0.95161 0.99345 1.18700 0.92815 0.97059 0.89008 1.21223 1.29346 1.11671 0.91504 0.92532 1.24940 0.95875 0.96474 0.96753 1.69881 1.44582 1.39003 0.99706 0.86678 0.80448 0.83248 0.78527 1.19761 1.21194 1.21247 1.21457 0.96583 0.92702 1.03449 1.22071 0.98191 1.02227 0.94310 0.91443 0.91480 0.90325 0.91252 0.91260 0.91650 0.90936 0.91660 0.82410 0.91581 0.93756 0.91142 0.94875 0.93362 0.95807 0.93301 0.89180 0.96772 0.95482 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.29 37.16 0.38 -0.68 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.36 -4.50 10.12 -39.24 -0.40 -4.89 16 4 C 0.46 6.76 7.28 36.01 0.26 7.03 16 5 O -0.50 -8.64 15.40 -18.75 -0.29 -8.93 16 6 C 0.09 1.31 2.94 -68.86 -0.20 1.11 16 7 H 0.08 1.12 7.12 -51.93 -0.37 0.75 16 8 C -0.13 -1.54 9.33 37.16 0.35 -1.19 16 9 N -0.67 -11.08 5.93 -100.95 -0.60 -11.67 16 10 C 0.09 1.65 2.28 -67.71 -0.15 1.50 16 11 C -0.09 -1.72 5.30 -26.73 -0.14 -1.86 16 12 C -0.11 -2.18 5.41 -26.73 -0.14 -2.32 16 13 C 0.04 1.03 2.59 -91.77 -0.24 0.79 16 14 C -0.50 -13.22 6.61 -34.44 -0.23 -13.45 16 15 H 0.06 1.51 6.71 -52.49 -0.35 1.15 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 18 Si 0.88 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.10 -2.37 5.24 -26.71 -0.14 -2.51 16 23 C -0.13 -2.64 4.94 -26.71 -0.13 -2.77 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.07 0.72 8.13 -51.93 -0.42 0.29 16 29 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.07 0.82 7.43 -51.92 -0.39 0.44 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.35 6.38 7.19 -39.29 -0.28 6.10 16 33 H 0.07 1.11 7.11 -51.93 -0.37 0.74 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.03 0.51 7.43 -51.93 -0.39 0.12 16 43 H 0.07 1.71 7.21 -51.93 -0.37 1.33 16 LS Contribution 336.17 15.07 5.07 5.07 Total: -1.00 -28.79 336.17 -8.25 -37.04 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.38 Total: 3.61 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.25 Total: -11.99 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.03 Total: -36.24 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.69 Total: -13.82 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.79 -8.25 -37.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.066 kcal (2) G-P(sol) polarization free energy of solvation -28.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds