Wall clock time and date at job start Mon Mar 30 2020 01:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.46860 * 2 1 4 4 C 1.34224 * 116.99767 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00568 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99901 * 179.97438 * 4 3 2 7 7 H 1.09004 * 109.47106 * 60.00319 * 6 4 3 8 8 C 1.52998 * 109.47148 * 300.00350 * 6 4 3 9 9 N 1.46900 * 109.46926 * 180.02562 * 6 4 3 10 10 C 1.46909 * 110.99705 * 205.00238 * 9 6 4 11 11 C 1.53002 * 109.46750 * 204.99952 * 10 9 6 12 12 C 1.52997 * 109.46817 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47127 * 60.00361 * 12 11 10 14 14 C 1.50697 * 109.47239 * 59.99504 * 13 12 11 15 15 H 1.07998 * 120.00039 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00021 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99560 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47271 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47166 * 120.00199 * 18 16 14 21 21 H 1.48494 * 109.47366 * 240.00615 * 18 16 14 22 22 C 1.52999 * 109.46626 * 299.99539 * 13 12 11 23 23 C 1.52996 * 109.47268 * 85.00275 * 10 9 6 24 24 H 1.08994 * 109.47238 * 300.00047 * 1 2 3 25 25 H 1.09004 * 109.46751 * 59.99943 * 1 2 3 26 26 H 1.09004 * 109.46956 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47083 * 240.00277 * 2 1 3 28 28 H 1.08991 * 109.46926 * 119.99782 * 2 1 3 29 29 H 1.08994 * 109.47407 * 60.00194 * 8 6 4 30 30 H 1.09008 * 109.46570 * 179.97438 * 8 6 4 31 31 H 1.08993 * 109.46908 * 299.99245 * 8 6 4 32 32 H 1.00899 * 111.00149 * 328.95164 * 9 6 4 33 33 H 1.08996 * 109.46883 * 324.99928 * 10 9 6 34 34 H 1.09002 * 109.47070 * 60.00054 * 11 10 9 35 35 H 1.08996 * 109.47407 * 299.99654 * 11 10 9 36 36 H 1.09001 * 109.47502 * 300.00518 * 12 11 10 37 37 H 1.09001 * 109.47289 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.47050 * 179.97438 * 13 12 11 39 39 H 0.97002 * 119.99397 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.46719 * 180.02562 * 22 13 12 41 41 H 1.08993 * 109.47839 * 299.99931 * 22 13 12 42 42 H 1.09001 * 109.46993 * 300.00132 * 23 10 9 43 43 H 1.09000 * 109.47380 * 59.99238 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5843 3.4702 0.8896 8 6 3.4496 3.6837 -1.2499 9 7 5.3877 2.8606 0.0001 10 6 5.9784 4.0746 0.5793 11 6 7.3936 4.2651 0.0300 12 6 8.0086 5.5297 0.6328 13 6 8.0667 5.3927 2.1556 14 6 8.9121 4.1998 2.5207 15 1 9.3631 3.5997 1.7444 16 6 9.1105 3.8752 3.8460 17 7 8.5616 4.6064 4.7913 18 14 10.1589 2.3970 4.2987 19 1 10.6583 1.7465 3.0606 20 1 11.3112 2.8413 5.1232 21 1 9.3412 1.4283 5.0719 22 6 6.6515 5.2023 2.7048 23 6 6.0366 3.9370 2.1020 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.3612 3.7408 -1.2504 30 1 3.8659 4.6912 -1.2499 31 1 3.7861 3.1512 -2.1393 32 1 5.7065 2.0360 0.4863 33 1 5.3670 4.9375 0.3156 34 1 7.3522 4.3631 -1.0548 35 1 8.0050 3.4021 0.2938 36 1 7.3971 6.3926 0.3687 37 1 9.0167 5.6658 0.2412 38 1 8.5053 6.2935 2.5849 39 1 8.7015 4.3782 5.7237 40 1 6.6928 5.1051 3.7897 41 1 6.0400 6.0650 2.4407 42 1 5.0283 3.8012 2.4933 43 1 6.6478 3.0739 2.3658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:46 Heat of formation + Delta-G solvation = -126.460617 kcal Electronic energy + Delta-G solvation = -21596.104873 eV Core-core repulsion = 18446.605971 eV Total energy + Delta-G solvation = -3149.498902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.73678 -39.85816 -37.92486 -36.58603 -34.27767 -32.78761 -31.72888 -31.18919 -28.83005 -26.67503 -25.78376 -23.72862 -23.11918 -22.27616 -21.36217 -20.58675 -18.81040 -18.12667 -17.74509 -17.43134 -16.63240 -16.32556 -15.92960 -15.37365 -15.02478 -14.88730 -14.57846 -14.45995 -13.77175 -13.63131 -13.57484 -13.27347 -13.06802 -12.95727 -12.88750 -12.73711 -12.67385 -12.57503 -12.48591 -12.35919 -12.16144 -11.72644 -11.56536 -11.47525 -11.40288 -10.96981 -10.72357 -10.57360 -10.32927 -9.36397 -8.03480 -6.12374 1.06583 1.36491 1.40664 1.49903 1.52910 2.44705 3.12643 3.24889 3.59900 3.97289 3.98324 4.06299 4.08304 4.14458 4.26387 4.32304 4.48004 4.67951 4.72286 4.78320 4.78693 4.88176 4.91426 4.91713 4.98391 5.01340 5.11019 5.12483 5.28672 5.30683 5.39943 5.46711 5.56266 5.59933 5.65530 5.74682 5.97250 6.09542 6.24391 6.29084 6.48658 6.65227 6.98456 7.53368 9.00989 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021868 B = 0.004701 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.126828 B = 5955.165977 C = 6601.461878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.465 3.535 5 O -0.532 6.532 6 C 0.089 3.911 7 H 0.090 0.910 8 C -0.126 4.126 9 N -0.673 5.673 10 C 0.106 3.894 11 C -0.085 4.085 12 C -0.100 4.100 13 C 0.037 3.963 14 C -0.503 4.503 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.936 3.064 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.287 1.287 22 C -0.099 4.099 23 C -0.120 4.120 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.343 0.657 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.045 0.955 38 H -0.010 1.010 39 H 0.256 0.744 40 H 0.054 0.946 41 H 0.034 0.966 42 H 0.041 0.959 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.426 -4.197 -10.977 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.308 3.692 5 O -0.421 6.421 6 C -0.021 4.021 7 H 0.107 0.893 8 C -0.184 4.184 9 N -0.307 5.307 10 C -0.003 4.003 11 C -0.123 4.123 12 C -0.138 4.138 13 C 0.018 3.982 14 C -0.542 4.542 15 H 0.069 0.931 16 C -0.183 4.183 17 N -0.559 5.559 18 Si 0.763 3.237 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.213 1.213 22 C -0.137 4.137 23 C -0.159 4.159 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.008 0.992 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -16.211 -4.315 -11.459 20.315 hybrid contribution 0.874 -1.208 1.917 2.429 sum -15.337 -5.524 -9.542 18.888 Atomic orbital electron populations 1.21819 0.89990 1.04416 1.03886 1.23325 0.97359 0.79182 1.02406 1.86495 1.23306 1.33744 1.83524 1.24082 0.81025 0.92860 0.71216 1.90653 1.61091 1.43912 1.46489 1.21363 0.89169 0.88881 1.02709 0.89257 1.21731 1.01904 1.00491 0.94283 1.60845 1.03968 1.05914 1.59952 1.21529 0.96037 0.91603 0.91112 1.21246 0.94436 0.97798 0.98824 1.21461 0.99155 0.96934 0.96287 1.18708 0.93037 0.94582 0.91829 1.21485 1.29202 1.12122 0.91362 0.93093 1.25573 0.97098 0.98696 0.96979 1.70012 1.45767 1.40334 0.99768 0.85835 0.79059 0.80599 0.78191 1.19367 1.20917 1.21300 1.21305 0.96374 0.94763 1.01284 1.21944 0.97932 0.99420 0.96605 0.91336 0.90811 0.88208 0.91221 0.91888 0.89596 0.90149 0.92041 0.83653 0.89311 0.91402 0.93743 0.92479 0.93572 0.99179 0.93505 0.92776 0.94754 0.94081 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 10.29 71.98 0.74 -0.93 16 2 C 0.05 0.95 6.19 71.98 0.45 1.40 16 3 O -0.35 -8.26 10.12 -51.36 -0.52 -8.78 16 4 C 0.46 12.97 7.28 71.24 0.52 13.49 16 5 O -0.53 -18.24 15.40 21.97 0.34 -17.90 16 6 C 0.09 2.30 2.94 44.17 0.13 2.43 16 7 H 0.09 2.21 7.12 -2.38 -0.02 2.19 16 8 C -0.13 -2.51 9.33 71.98 0.67 -1.83 16 9 N -0.67 -21.05 5.93 -473.28 -2.81 -23.86 16 10 C 0.11 3.55 2.28 44.91 0.10 3.65 16 11 C -0.09 -3.09 5.30 30.59 0.16 -2.93 16 12 C -0.10 -3.96 5.41 30.60 0.17 -3.79 16 13 C 0.04 1.80 2.59 -11.54 -0.03 1.77 16 14 C -0.50 -27.15 6.61 25.60 0.17 -26.98 16 15 H 0.05 2.75 6.71 -2.91 -0.02 2.73 16 16 C 0.01 0.79 5.30 84.66 0.45 1.24 16 17 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 18 Si 0.94 44.59 29.54 68.60 2.03 46.61 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 C -0.10 -4.51 5.24 30.61 0.16 -4.35 16 23 C -0.12 -4.83 4.94 30.61 0.15 -4.68 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 28 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 29 H 0.09 1.36 8.11 -2.39 -0.02 1.34 16 30 H 0.08 1.49 7.43 -2.38 -0.02 1.48 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.34 12.23 7.19 -89.69 -0.64 11.58 16 33 H 0.09 2.63 7.11 -2.39 -0.02 2.62 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.04 1.84 6.62 -2.39 -0.02 1.83 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 40 H 0.05 2.88 6.07 -2.39 -0.01 2.87 16 41 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.04 1.51 7.43 -2.39 -0.02 1.49 16 43 H 0.04 1.91 7.21 -2.39 -0.02 1.90 16 Total: -1.00 -62.90 336.17 3.45 -59.45 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.34 Total: 18.97 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 3.84 Total: -21.53 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -2.57 Total: -76.82 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.18 Total: -26.68 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -62.90 3.45 -59.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.009 kcal (2) G-P(sol) polarization free energy of solvation -62.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds