Wall clock time and date at job start Mon Mar 30 2020 01:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99999 * 2 1 4 4 O 1.20833 * 119.99820 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00180 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47354 * 180.02562 * 5 3 2 7 7 N 1.46898 * 109.47343 * 180.02562 * 6 5 3 8 8 C 1.46902 * 111.00111 * 66.04245 * 7 6 5 9 9 C 1.46898 * 111.00078 * 189.99607 * 7 6 5 10 10 C 1.52999 * 109.47548 * 295.00001 * 9 7 6 11 11 C 1.52997 * 109.47317 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 59.99960 * 11 10 9 13 13 C 1.50696 * 109.47264 * 60.00033 * 12 11 10 14 14 H 1.07998 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99662 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00409 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99651 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47134 * 90.00165 * 17 15 13 19 19 H 1.48507 * 109.46904 * 209.99987 * 17 15 13 20 20 H 1.48501 * 109.47483 * 329.99650 * 17 15 13 21 21 C 1.53002 * 109.47233 * 299.99657 * 12 11 10 22 22 C 1.52997 * 109.46817 * 60.00194 * 21 12 11 23 23 H 1.09005 * 109.46948 * 299.99267 * 1 2 3 24 24 H 1.08994 * 109.47332 * 59.99801 * 1 2 3 25 25 H 1.09001 * 109.47028 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47117 * 60.00229 * 5 3 2 27 27 H 1.09002 * 109.47233 * 300.00323 * 5 3 2 28 28 H 1.08994 * 109.47286 * 59.99800 * 6 5 3 29 29 H 1.09002 * 109.46821 * 300.00094 * 6 5 3 30 30 H 1.09008 * 109.46689 * 183.95707 * 8 7 6 31 31 H 1.09003 * 109.47283 * 303.95381 * 8 7 6 32 32 H 1.08994 * 109.47461 * 63.95735 * 8 7 6 33 33 H 1.09002 * 109.47032 * 54.99709 * 9 7 6 34 34 H 1.08996 * 109.46929 * 59.99097 * 10 9 7 35 35 H 1.09002 * 109.46716 * 299.99902 * 10 9 7 36 36 H 1.09002 * 109.47153 * 299.99641 * 11 10 9 37 37 H 1.09001 * 109.46832 * 179.97438 * 11 10 9 38 38 H 1.09004 * 109.46724 * 180.02562 * 12 11 10 39 39 H 0.96998 * 120.00365 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.47662 * 180.02562 * 21 12 11 41 41 H 1.09002 * 109.47075 * 300.00932 * 21 12 11 42 42 H 1.09002 * 109.47153 * 60.00231 * 22 21 12 43 43 H 1.09001 * 109.47289 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4670 2.8190 -0.0010 8 6 6.0209 2.2914 -1.2552 9 6 5.9223 4.1951 0.2377 10 6 5.4878 5.0856 -0.9281 11 6 5.9614 6.5190 -0.6791 12 6 7.4868 6.5392 -0.5629 13 6 8.0949 6.0243 -1.8420 14 1 7.4571 5.7133 -2.6562 15 6 9.4655 5.9492 -1.9723 16 7 10.2421 6.3274 -0.9806 17 14 10.2192 5.3103 -3.5576 18 1 10.4415 6.4431 -4.4917 19 1 11.5171 4.6531 -3.2589 20 1 9.2986 4.3267 -4.1823 21 6 7.9213 5.6488 0.6030 22 6 7.4477 4.2154 0.3540 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.9557 0.7810 -0.8909 27 1 3.9564 0.7806 0.8891 28 1 3.6107 3.2356 0.8906 29 1 3.6099 3.2368 -0.8893 30 1 7.1096 2.2951 -1.2014 31 1 5.6681 1.2714 -1.4075 32 1 5.6961 2.9163 -2.0871 33 1 5.4828 4.5678 1.1630 34 1 4.4010 5.0715 -1.0107 35 1 5.9273 4.7129 -1.8533 36 1 5.5215 6.8914 0.2461 37 1 5.6522 7.1532 -1.5099 38 1 7.8241 7.5603 -0.3850 39 1 11.2063 6.2742 -1.0722 40 1 9.0080 5.6634 0.6862 41 1 7.4814 6.0211 1.5282 42 1 7.8876 3.8429 -0.5711 43 1 7.7569 3.5811 1.1848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173336910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:37 Heat of formation + Delta-G solvation = -97.514982 kcal Electronic energy + Delta-G solvation = -21628.194710 eV Core-core repulsion = 18479.950985 eV Total energy + Delta-G solvation = -3148.243725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61781 -38.91390 -36.77171 -35.66152 -32.48165 -31.28425 -29.61778 -28.39214 -27.82399 -26.03722 -24.70517 -22.89182 -21.51528 -20.54411 -19.69091 -18.46315 -17.78950 -16.81785 -16.75830 -15.76638 -15.20179 -14.78873 -14.74653 -14.33707 -13.73141 -13.49412 -13.44140 -13.22689 -12.76682 -12.50698 -12.40193 -11.93275 -11.62911 -11.45547 -11.37174 -11.12005 -11.01645 -10.94831 -10.83994 -10.80612 -10.60695 -10.53675 -10.18327 -10.00166 -9.51091 -9.22216 -8.85553 -8.60856 -8.24122 -7.81249 -5.93829 -3.98111 2.07475 2.52548 3.30667 3.38297 3.40104 4.29578 4.46083 4.66693 4.85942 4.90059 4.95543 5.07446 5.27997 5.36543 5.46251 5.53943 5.64915 5.77299 5.79593 5.98537 6.02968 6.07659 6.20948 6.29503 6.38662 6.51759 6.56583 6.65745 6.75088 6.82429 6.89428 7.10069 7.18298 7.36343 7.49554 7.56527 7.60670 7.65749 7.78643 7.99282 8.21099 8.52770 9.04181 9.64786 11.12038 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.004137 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.281741 B = 6766.043383 C = 7094.847984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.462 3.538 4 O -0.508 6.508 5 C -0.111 4.111 6 C 0.064 3.936 7 N -0.537 5.537 8 C 0.014 3.986 9 C 0.092 3.908 10 C -0.138 4.138 11 C -0.103 4.103 12 C 0.043 3.957 13 C -0.500 4.500 14 H 0.053 0.947 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.882 3.118 18 H -0.283 1.283 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.107 4.107 22 C -0.091 4.091 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.043 0.957 38 H 0.023 0.977 39 H 0.258 0.742 40 H 0.092 0.908 41 H 0.014 0.986 42 H 0.073 0.927 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.667 -11.795 2.463 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.305 3.695 4 O -0.395 6.395 5 C -0.149 4.149 6 C -0.064 4.064 7 N -0.260 5.260 8 C -0.134 4.134 9 C -0.015 4.015 10 C -0.177 4.177 11 C -0.141 4.141 12 C 0.025 3.975 13 C -0.538 4.538 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.710 3.290 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.146 4.146 22 C -0.129 4.129 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.032 0.968 42 H 0.091 0.909 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.532 -11.791 2.900 18.181 hybrid contribution -0.102 0.188 -1.596 1.610 sum -13.634 -11.602 1.304 17.950 Atomic orbital electron populations 1.23242 0.76556 1.03531 1.02547 1.86517 1.23320 1.33790 1.84294 1.23951 0.92388 0.81157 0.72022 1.90683 1.67375 1.36317 1.45126 1.21434 0.86258 1.00793 1.06407 1.21831 0.89307 0.92872 1.02398 1.62300 1.06411 1.22725 1.34536 1.22523 1.01798 0.98516 0.90577 1.21770 0.97663 0.84751 0.97306 1.22071 0.97759 0.97652 1.00229 1.21491 0.99626 0.94486 0.98482 1.18694 0.88749 0.95671 0.94401 1.21125 0.91037 1.42133 0.99495 0.92925 1.24923 0.97377 0.95676 0.95910 1.69863 1.03919 1.48317 1.30858 0.86755 0.78791 0.79070 0.84341 1.20901 1.21316 1.20049 1.21511 1.03423 0.93572 0.96066 1.21426 0.91767 0.98418 1.01251 0.91930 0.91958 0.88211 0.87608 0.86830 0.90265 0.93759 0.90278 0.92468 0.94846 0.91392 0.94608 0.90789 0.94864 0.93791 0.95880 0.93167 0.88975 0.96774 0.90889 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.86 10.57 -39.25 -0.41 -4.28 16 3 C 0.46 5.64 7.96 36.00 0.29 5.92 16 4 O -0.51 -7.66 15.73 -18.76 -0.30 -7.96 16 5 C -0.11 -1.22 5.74 -27.89 -0.16 -1.38 16 6 C 0.06 0.89 3.69 -3.83 -0.01 0.88 16 7 N -0.54 -8.35 4.75 -234.89 -1.12 -9.46 16 8 C 0.01 0.21 8.62 60.07 0.52 0.73 16 9 C 0.09 1.67 2.22 -67.71 -0.15 1.52 16 10 C -0.14 -2.64 4.28 -26.73 -0.11 -2.76 16 11 C -0.10 -2.15 5.41 -26.73 -0.14 -2.30 16 12 C 0.04 1.05 2.59 -91.77 -0.24 0.82 16 13 C -0.50 -13.11 6.61 -34.44 -0.23 -13.34 16 14 H 0.05 1.38 6.71 -52.49 -0.35 1.03 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -24.91 11.32 55.43 0.63 -24.29 16 17 Si 0.88 20.89 29.54 -169.99 -5.02 15.87 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.11 -2.48 5.24 -26.73 -0.14 -2.62 16 22 C -0.09 -1.87 4.78 -26.73 -0.13 -1.99 16 23 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 24 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.11 1.03 6.47 -51.93 -0.34 0.70 16 27 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.14 7.96 -51.93 -0.41 0.73 16 29 H 0.04 0.67 6.89 -51.93 -0.36 0.31 16 30 H 0.08 1.30 6.33 -51.92 -0.33 0.97 16 31 H 0.06 0.69 6.30 -51.93 -0.33 0.37 16 32 H 0.03 0.53 6.28 -51.93 -0.33 0.21 16 33 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 34 H 0.04 0.64 6.75 -51.93 -0.35 0.29 16 35 H 0.07 1.53 4.86 -51.93 -0.25 1.27 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 40 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 41 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 1.63 5.50 -51.93 -0.29 1.35 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -28.94 325.96 -7.85 -36.79 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.00 Total: 0.03 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 0.46 Total: -11.61 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: -0.49 Total: -33.75 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.71 Total: -12.24 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.94 -7.85 -36.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.725 kcal (2) G-P(sol) polarization free energy of solvation -28.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds