Wall clock time and date at job start Mon Mar 30 2020 01:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99999 * 2 1 4 4 O 1.20833 * 119.99820 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00180 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47354 * 180.02562 * 5 3 2 7 7 N 1.46898 * 109.47343 * 180.02562 * 6 5 3 8 8 C 1.46902 * 111.00111 * 66.04245 * 7 6 5 9 9 C 1.46898 * 111.00078 * 189.99607 * 7 6 5 10 10 C 1.52999 * 109.47548 * 295.00001 * 9 7 6 11 11 C 1.52997 * 109.47317 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 59.99960 * 11 10 9 13 13 C 1.50696 * 109.47264 * 60.00033 * 12 11 10 14 14 H 1.07998 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99662 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00409 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99651 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47134 * 90.00165 * 17 15 13 19 19 H 1.48507 * 109.46904 * 209.99987 * 17 15 13 20 20 H 1.48501 * 109.47483 * 329.99650 * 17 15 13 21 21 C 1.53002 * 109.47233 * 299.99657 * 12 11 10 22 22 C 1.52997 * 109.46817 * 60.00194 * 21 12 11 23 23 H 1.09005 * 109.46948 * 299.99267 * 1 2 3 24 24 H 1.08994 * 109.47332 * 59.99801 * 1 2 3 25 25 H 1.09001 * 109.47028 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47117 * 60.00229 * 5 3 2 27 27 H 1.09002 * 109.47233 * 300.00323 * 5 3 2 28 28 H 1.08994 * 109.47286 * 59.99800 * 6 5 3 29 29 H 1.09002 * 109.46821 * 300.00094 * 6 5 3 30 30 H 1.09008 * 109.46689 * 183.95707 * 8 7 6 31 31 H 1.09003 * 109.47283 * 303.95381 * 8 7 6 32 32 H 1.08994 * 109.47461 * 63.95735 * 8 7 6 33 33 H 1.09002 * 109.47032 * 54.99709 * 9 7 6 34 34 H 1.08996 * 109.46929 * 59.99097 * 10 9 7 35 35 H 1.09002 * 109.46716 * 299.99902 * 10 9 7 36 36 H 1.09002 * 109.47153 * 299.99641 * 11 10 9 37 37 H 1.09001 * 109.46832 * 179.97438 * 11 10 9 38 38 H 1.09004 * 109.46724 * 180.02562 * 12 11 10 39 39 H 0.96998 * 120.00365 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.47662 * 180.02562 * 21 12 11 41 41 H 1.09002 * 109.47075 * 300.00932 * 21 12 11 42 42 H 1.09002 * 109.47153 * 60.00231 * 22 21 12 43 43 H 1.09001 * 109.47289 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4670 2.8190 -0.0010 8 6 6.0209 2.2914 -1.2552 9 6 5.9223 4.1951 0.2377 10 6 5.4878 5.0856 -0.9281 11 6 5.9614 6.5190 -0.6791 12 6 7.4868 6.5392 -0.5629 13 6 8.0949 6.0243 -1.8420 14 1 7.4571 5.7133 -2.6562 15 6 9.4655 5.9492 -1.9723 16 7 10.2421 6.3274 -0.9806 17 14 10.2192 5.3103 -3.5576 18 1 10.4415 6.4431 -4.4917 19 1 11.5171 4.6531 -3.2589 20 1 9.2986 4.3267 -4.1823 21 6 7.9213 5.6488 0.6030 22 6 7.4477 4.2154 0.3540 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.9557 0.7810 -0.8909 27 1 3.9564 0.7806 0.8891 28 1 3.6107 3.2356 0.8906 29 1 3.6099 3.2368 -0.8893 30 1 7.1096 2.2951 -1.2014 31 1 5.6681 1.2714 -1.4075 32 1 5.6961 2.9163 -2.0871 33 1 5.4828 4.5678 1.1630 34 1 4.4010 5.0715 -1.0107 35 1 5.9273 4.7129 -1.8533 36 1 5.5215 6.8914 0.2461 37 1 5.6522 7.1532 -1.5099 38 1 7.8241 7.5603 -0.3850 39 1 11.2063 6.2742 -1.0722 40 1 9.0080 5.6634 0.6862 41 1 7.4814 6.0211 1.5282 42 1 7.8876 3.8429 -0.5711 43 1 7.7569 3.5811 1.1848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173336910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:36 Heat of formation + Delta-G solvation = -114.364223 kcal Electronic energy + Delta-G solvation = -21628.925348 eV Core-core repulsion = 18479.950985 eV Total energy + Delta-G solvation = -3148.974363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.54184 -40.38309 -37.78081 -37.09897 -34.26562 -32.62204 -31.30129 -29.88256 -28.69105 -27.28401 -26.55725 -24.17752 -23.09287 -21.76180 -21.09331 -20.17917 -18.72511 -17.76439 -17.71195 -17.62554 -16.72106 -16.37034 -15.86934 -15.79364 -15.13061 -14.96193 -14.71890 -14.41616 -14.32699 -13.73175 -13.40520 -13.21015 -13.09565 -13.00993 -12.84938 -12.77800 -12.57188 -12.41296 -12.34487 -12.06672 -11.88125 -11.78340 -11.69376 -11.56181 -11.31884 -10.99688 -10.66333 -10.52337 -10.26875 -9.13290 -8.00730 -6.10950 1.16323 1.41271 1.43734 1.51751 1.71565 2.47103 3.09517 3.27360 3.73984 3.95615 4.04940 4.12640 4.20817 4.32243 4.33597 4.40707 4.44544 4.58204 4.68958 4.71779 4.75762 4.79605 4.84437 4.89022 4.97518 4.99950 5.05522 5.07302 5.19611 5.22833 5.38324 5.42694 5.50167 5.69220 5.71973 5.76984 5.93578 6.17125 6.22317 6.28957 6.48797 6.71735 6.98341 7.54734 9.04111 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.004137 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.281741 B = 6766.043383 C = 7094.847984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.466 3.534 4 O -0.543 6.543 5 C -0.103 4.103 6 C 0.067 3.933 7 N -0.531 5.531 8 C 0.014 3.986 9 C 0.100 3.900 10 C -0.129 4.129 11 C -0.099 4.099 12 C 0.039 3.961 13 C -0.504 4.504 14 H 0.050 0.950 15 C 0.016 3.984 16 N -0.918 5.918 17 Si 0.939 3.061 18 H -0.283 1.283 19 H -0.286 1.286 20 H -0.266 1.266 21 C -0.103 4.103 22 C -0.080 4.080 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.132 0.868 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.040 0.960 38 H -0.014 1.014 39 H 0.257 0.743 40 H 0.059 0.941 41 H 0.025 0.975 42 H 0.052 0.948 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.063 -13.949 2.237 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.433 6.433 5 C -0.140 4.140 6 C -0.061 4.061 7 N -0.254 5.254 8 C -0.134 4.134 9 C -0.008 4.008 10 C -0.168 4.168 11 C -0.137 4.137 12 C 0.021 3.979 13 C -0.542 4.542 14 H 0.068 0.932 15 C -0.182 4.182 16 N -0.558 5.558 17 Si 0.766 3.234 18 H -0.209 1.209 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.142 4.142 22 C -0.118 4.118 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.150 0.850 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.004 0.996 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.944 -13.971 2.669 20.631 hybrid contribution 0.281 0.865 -1.506 1.759 sum -14.662 -13.106 1.163 19.701 Atomic orbital electron populations 1.23533 0.74958 1.05663 1.02401 1.86505 1.24892 1.32780 1.83740 1.24101 0.92737 0.81060 0.71021 1.90677 1.68185 1.37483 1.46952 1.21360 0.85668 0.98857 1.08142 1.21794 0.87738 0.94967 1.01588 1.62262 1.07621 1.20628 1.34872 1.22556 1.00822 1.00245 0.89791 1.21571 0.95775 0.86307 0.97136 1.21964 0.98564 0.96298 0.99944 1.21408 0.97085 0.96042 0.99161 1.18681 0.91157 0.93713 0.94384 1.21337 0.91239 1.41637 1.00028 0.93202 1.25590 0.97931 0.96068 0.98596 1.70006 1.03941 1.49386 1.32501 0.85845 0.78046 0.78579 0.80952 1.20883 1.21174 1.19081 1.21370 1.01478 0.95260 0.96053 1.21247 0.93635 0.96442 1.00487 0.92057 0.92207 0.84984 0.85812 0.84998 0.90771 0.94961 0.91980 0.89025 0.95966 0.90744 0.92903 0.92390 0.93370 0.94150 0.99567 0.93358 0.92205 0.95599 0.92930 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.78 10.57 -51.40 -0.54 -7.32 16 3 C 0.47 10.30 7.96 71.23 0.57 10.87 16 4 O -0.54 -15.60 15.73 21.94 0.35 -15.26 16 5 C -0.10 -1.94 5.74 29.85 0.17 -1.77 16 6 C 0.07 1.71 3.69 86.30 0.32 2.02 16 7 N -0.53 -15.32 4.75 -897.04 -4.26 -19.58 16 8 C 0.01 0.38 8.62 127.69 1.10 1.48 16 9 C 0.10 3.48 2.22 44.92 0.10 3.58 16 10 C -0.13 -4.78 4.28 30.59 0.13 -4.65 16 11 C -0.10 -4.10 5.41 30.59 0.17 -3.94 16 12 C 0.04 1.94 2.59 -11.54 -0.03 1.91 16 13 C -0.50 -26.85 6.61 25.60 0.17 -26.68 16 14 H 0.05 2.64 6.71 -2.91 -0.02 2.62 16 15 C 0.02 0.88 5.30 84.66 0.45 1.33 16 16 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 17 Si 0.94 43.13 29.54 68.60 2.03 45.15 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 C -0.10 -4.83 5.24 30.59 0.16 -4.67 16 22 C -0.08 -3.26 4.78 30.60 0.15 -3.12 16 23 H 0.06 0.84 8.13 -2.38 -0.02 0.82 16 24 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 25 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.12 1.92 6.47 -2.39 -0.02 1.91 16 27 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.07 1.98 7.96 -2.39 -0.02 1.96 16 29 H 0.03 0.91 6.89 -2.39 -0.02 0.89 16 30 H 0.06 1.96 6.33 -2.38 -0.02 1.94 16 31 H 0.09 1.90 6.30 -2.39 -0.02 1.89 16 32 H 0.02 0.67 6.28 -2.39 -0.02 0.65 16 33 H 0.07 2.53 8.03 -2.39 -0.02 2.51 16 34 H 0.05 1.79 6.75 -2.39 -0.02 1.77 16 35 H 0.06 2.35 4.86 -2.39 -0.01 2.34 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 39 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 40 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 2.35 5.50 -2.39 -0.01 2.34 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -62.86 325.96 3.44 -59.42 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.99 Total: 12.04 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 4.64 Total: -22.06 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -4.02 Total: -71.98 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.20 Total: -22.58 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -62.86 3.44 -59.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.948 kcal (2) G-P(sol) polarization free energy of solvation -62.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds