Wall clock time and date at job start Mon Mar 30 2020 00:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00221 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99520 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.47800 * 327.19155 * 5 3 2 7 7 C 1.53002 * 109.47080 * 87.19587 * 5 3 2 8 8 N 1.46904 * 109.46909 * 207.19117 * 5 3 2 9 9 C 1.46894 * 111.00092 * 60.30381 * 8 5 3 10 10 C 1.46898 * 110.99869 * 184.25804 * 8 5 3 11 11 C 1.53000 * 109.47218 * 175.00240 * 10 8 5 12 12 C 1.52995 * 109.47453 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47329 * 300.00069 * 12 11 10 14 14 C 1.50695 * 109.47393 * 179.97438 * 13 12 11 15 15 H 1.08008 * 120.00479 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00621 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99357 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00637 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47007 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47551 * 119.99483 * 18 16 14 21 21 H 1.48504 * 109.46882 * 240.00185 * 18 16 14 22 22 C 1.52999 * 109.47277 * 59.99672 * 13 12 11 23 23 C 1.52999 * 109.46910 * 300.00213 * 22 13 12 24 24 H 1.08998 * 109.47028 * 59.99441 * 1 2 3 25 25 H 1.08997 * 109.47403 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46920 * 299.99662 * 1 2 3 27 27 H 1.09000 * 109.46584 * 299.99757 * 7 5 3 28 28 H 1.09000 * 109.47272 * 59.99644 * 7 5 3 29 29 H 1.09002 * 109.47328 * 179.97438 * 7 5 3 30 30 H 1.09002 * 109.47436 * 179.21601 * 9 8 5 31 31 H 1.09007 * 109.47204 * 299.21722 * 9 8 5 32 32 H 1.08999 * 109.47671 * 59.21156 * 9 8 5 33 33 H 1.08998 * 109.47420 * 54.99886 * 10 8 5 34 34 H 1.09007 * 109.47399 * 59.99355 * 11 10 8 35 35 H 1.09005 * 109.47114 * 300.00146 * 11 10 8 36 36 H 1.09001 * 109.47255 * 60.00205 * 12 11 10 37 37 H 1.08999 * 109.47524 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.47332 * 299.99519 * 13 12 11 39 39 H 0.97004 * 119.99713 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.47152 * 180.02562 * 22 13 12 41 41 H 1.08998 * 109.47091 * 60.00209 * 22 13 12 42 42 H 1.09001 * 109.47559 * 299.99498 * 23 22 13 43 43 H 1.09005 * 109.46902 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9742 0.4314 0.5577 7 6 4.0799 1.2307 -1.4400 8 7 3.9906 2.5308 0.6334 9 6 3.5205 2.6052 2.0231 10 6 5.4492 2.6898 0.5619 11 6 5.8406 4.0608 1.1169 12 6 7.3598 4.2262 1.0430 13 6 8.0331 3.1298 1.8708 14 6 9.5294 3.2923 1.7976 15 1 9.9576 4.0970 1.2181 16 6 10.3522 2.4132 2.4694 17 7 9.8310 1.4331 3.1746 18 14 12.2070 2.6151 2.3791 19 1 12.5366 3.7864 1.5279 20 1 12.7490 2.8274 3.7452 21 1 12.8101 1.3917 1.7919 22 6 7.6417 1.7588 1.3159 23 6 6.1225 1.5934 1.3898 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.7650 0.2988 -1.9095 28 1 3.6721 2.0742 -1.9971 29 1 5.1684 1.2882 -1.4396 30 1 3.8602 3.5385 2.4722 31 1 2.4311 2.5689 2.0406 32 1 3.9210 1.7634 2.5878 33 1 5.7727 2.6122 -0.4761 34 1 5.5171 4.1385 2.1549 35 1 5.3606 4.8420 0.5274 36 1 7.6837 4.1485 0.0052 37 1 7.6386 5.2031 1.4380 38 1 7.7093 3.2076 2.9087 39 1 10.4098 0.8144 3.6470 40 1 8.1211 0.9776 1.9060 41 1 7.9656 1.6810 0.2780 42 1 5.7986 1.6712 2.4277 43 1 5.8436 0.6168 0.9940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:19 Heat of formation + Delta-G solvation = -91.240401 kcal Electronic energy + Delta-G solvation = -21906.378877 eV Core-core repulsion = 18758.407238 eV Total energy + Delta-G solvation = -3147.971639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.73685 -38.97034 -36.60688 -35.49190 -32.64568 -31.27658 -29.77394 -28.80198 -27.97518 -25.49993 -24.74243 -23.45450 -21.78069 -20.83150 -19.48553 -18.50361 -17.75430 -16.75045 -16.40023 -16.30189 -15.37514 -14.93287 -14.56801 -14.22946 -13.81176 -13.46613 -13.23435 -13.10823 -12.76618 -12.45912 -12.26011 -12.18416 -11.88302 -11.59949 -11.50468 -11.46381 -11.34786 -10.99085 -10.86369 -10.71885 -10.43793 -10.36310 -10.16132 -10.04039 -9.89474 -9.33126 -8.99482 -8.66776 -8.31861 -7.94923 -5.96792 -4.02676 2.17618 2.54631 3.29854 3.38268 3.42237 4.04748 4.45248 4.69071 4.92268 4.94721 5.01738 5.09321 5.25359 5.32086 5.33109 5.49811 5.55080 5.61763 5.73729 5.76120 5.93530 6.05660 6.07333 6.16389 6.24402 6.28774 6.38426 6.41203 6.60722 6.64470 6.80748 6.90600 7.09459 7.15113 7.22872 7.35096 7.52306 7.76736 7.78087 8.03401 8.16835 8.49316 9.01976 9.62072 11.08584 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039633 B = 0.004081 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.313099 B = 6860.200693 C = 7064.388017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.465 3.535 4 O -0.488 6.488 5 C 0.091 3.909 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.520 5.520 9 C 0.013 3.987 10 C 0.086 3.914 11 C -0.106 4.106 12 C -0.107 4.107 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.054 0.946 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.104 4.104 23 C -0.150 4.150 24 H 0.061 0.939 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.023 0.977 39 H 0.258 0.742 40 H 0.091 0.909 41 H 0.033 0.967 42 H 0.057 0.943 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.055 -3.314 -6.013 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.373 6.373 5 C -0.019 4.019 6 H 0.095 0.905 7 C -0.202 4.202 8 N -0.245 5.245 9 C -0.135 4.135 10 C -0.021 4.021 11 C -0.143 4.143 12 C -0.145 4.145 13 C 0.030 3.970 14 C -0.549 4.549 15 H 0.073 0.927 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.142 4.142 23 C -0.189 4.189 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.476 -2.764 -6.171 16.889 hybrid contribution 1.103 -0.652 0.540 1.390 sum -14.373 -3.416 -5.631 15.810 Atomic orbital electron populations 1.23225 0.76643 1.03486 1.02444 1.86529 1.23198 1.33893 1.84375 1.23806 0.91959 0.81221 0.72425 1.90647 1.66774 1.36182 1.43720 1.21201 0.86803 0.94717 0.99152 0.90525 1.21866 1.03047 1.02750 0.92537 1.62172 1.13936 1.31100 1.17249 1.22537 1.00165 1.02201 0.88608 1.21931 0.83114 0.96557 1.00468 1.21614 0.97712 0.94815 1.00208 1.21617 0.92161 1.00231 1.00531 1.18658 0.94257 0.89756 0.94365 1.21288 0.91319 1.12570 1.29724 0.92744 1.24971 0.98449 0.95361 0.95274 1.69891 1.34527 1.16440 1.32185 0.86600 0.86107 0.77962 0.77709 1.19835 1.21143 1.21128 1.21543 0.90017 1.02766 0.99911 1.22297 1.00233 0.96727 0.99639 0.92001 0.88228 0.92022 0.91431 0.91083 0.89838 0.90159 0.92015 0.94924 0.89682 0.92505 0.92694 0.93348 0.93257 0.95849 0.93213 0.89093 0.94793 0.92470 0.93951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.41 10.57 -39.26 -0.41 -4.83 16 3 C 0.46 6.51 6.17 36.01 0.22 6.73 16 4 O -0.49 -7.98 15.27 -18.75 -0.29 -8.26 16 5 C 0.09 1.25 2.18 -68.86 -0.15 1.10 16 6 H 0.08 1.04 6.65 -51.93 -0.35 0.69 16 7 C -0.14 -1.72 8.82 37.16 0.33 -1.39 16 8 N -0.52 -7.98 4.33 -228.30 -0.99 -8.97 16 9 C 0.01 0.19 8.39 60.06 0.50 0.70 16 10 C 0.09 1.42 1.88 -67.71 -0.13 1.29 16 11 C -0.11 -1.84 5.01 -26.73 -0.13 -1.98 16 12 C -0.11 -2.17 5.14 -26.74 -0.14 -2.31 16 13 C 0.05 1.16 2.10 -91.78 -0.19 0.96 16 14 C -0.51 -13.79 8.56 -34.44 -0.29 -14.08 16 15 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.64 5.30 -17.81 -0.09 1.55 16 17 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 22 C -0.10 -2.33 4.98 -26.73 -0.13 -2.47 16 23 C -0.15 -2.75 4.50 -26.73 -0.12 -2.87 16 24 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.01 6.23 -51.93 -0.32 0.68 16 30 H 0.08 1.19 6.09 -51.93 -0.32 0.88 16 31 H 0.06 0.91 6.41 -51.92 -0.33 0.58 16 32 H 0.03 0.48 6.55 -51.93 -0.34 0.14 16 33 H 0.09 1.38 5.95 -51.93 -0.31 1.07 16 34 H 0.06 1.00 6.32 -51.93 -0.33 0.67 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.09 6.49 -51.93 -0.34 0.75 16 43 H 0.04 0.71 6.61 -51.93 -0.34 0.37 16 LS Contribution 326.76 15.07 4.92 4.92 Total: -1.00 -29.44 326.76 -7.48 -36.92 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.06 Total: -0.01 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 0.74 Total: -11.39 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: -0.36 Total: -33.43 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.70 Total: -13.09 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.44 -7.48 -36.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.318 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds