Wall clock time and date at job start Mon Mar 30 2020 00:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00221 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99520 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.47800 * 327.19155 * 5 3 2 7 7 C 1.53002 * 109.47080 * 87.19587 * 5 3 2 8 8 N 1.46904 * 109.46909 * 207.19117 * 5 3 2 9 9 C 1.46894 * 111.00092 * 60.30381 * 8 5 3 10 10 C 1.46898 * 110.99869 * 184.25804 * 8 5 3 11 11 C 1.53000 * 109.47218 * 175.00240 * 10 8 5 12 12 C 1.52995 * 109.47453 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47329 * 300.00069 * 12 11 10 14 14 C 1.50695 * 109.47393 * 179.97438 * 13 12 11 15 15 H 1.08008 * 120.00479 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00621 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99357 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00637 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47007 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47551 * 119.99483 * 18 16 14 21 21 H 1.48504 * 109.46882 * 240.00185 * 18 16 14 22 22 C 1.52999 * 109.47277 * 59.99672 * 13 12 11 23 23 C 1.52999 * 109.46910 * 300.00213 * 22 13 12 24 24 H 1.08998 * 109.47028 * 59.99441 * 1 2 3 25 25 H 1.08997 * 109.47403 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46920 * 299.99662 * 1 2 3 27 27 H 1.09000 * 109.46584 * 299.99757 * 7 5 3 28 28 H 1.09000 * 109.47272 * 59.99644 * 7 5 3 29 29 H 1.09002 * 109.47328 * 179.97438 * 7 5 3 30 30 H 1.09002 * 109.47436 * 179.21601 * 9 8 5 31 31 H 1.09007 * 109.47204 * 299.21722 * 9 8 5 32 32 H 1.08999 * 109.47671 * 59.21156 * 9 8 5 33 33 H 1.08998 * 109.47420 * 54.99886 * 10 8 5 34 34 H 1.09007 * 109.47399 * 59.99355 * 11 10 8 35 35 H 1.09005 * 109.47114 * 300.00146 * 11 10 8 36 36 H 1.09001 * 109.47255 * 60.00205 * 12 11 10 37 37 H 1.08999 * 109.47524 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.47332 * 299.99519 * 13 12 11 39 39 H 0.97004 * 119.99713 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.47152 * 180.02562 * 22 13 12 41 41 H 1.08998 * 109.47091 * 60.00209 * 22 13 12 42 42 H 1.09001 * 109.47559 * 299.99498 * 23 22 13 43 43 H 1.09005 * 109.46902 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9742 0.4314 0.5577 7 6 4.0799 1.2307 -1.4400 8 7 3.9906 2.5308 0.6334 9 6 3.5205 2.6052 2.0231 10 6 5.4492 2.6898 0.5619 11 6 5.8406 4.0608 1.1169 12 6 7.3598 4.2262 1.0430 13 6 8.0331 3.1298 1.8708 14 6 9.5294 3.2923 1.7976 15 1 9.9576 4.0970 1.2181 16 6 10.3522 2.4132 2.4694 17 7 9.8310 1.4331 3.1746 18 14 12.2070 2.6151 2.3791 19 1 12.5366 3.7864 1.5279 20 1 12.7490 2.8274 3.7452 21 1 12.8101 1.3917 1.7919 22 6 7.6417 1.7588 1.3159 23 6 6.1225 1.5934 1.3898 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.7650 0.2988 -1.9095 28 1 3.6721 2.0742 -1.9971 29 1 5.1684 1.2882 -1.4396 30 1 3.8602 3.5385 2.4722 31 1 2.4311 2.5689 2.0406 32 1 3.9210 1.7634 2.5878 33 1 5.7727 2.6122 -0.4761 34 1 5.5171 4.1385 2.1549 35 1 5.3606 4.8420 0.5274 36 1 7.6837 4.1485 0.0052 37 1 7.6386 5.2031 1.4380 38 1 7.7093 3.2076 2.9087 39 1 10.4098 0.8144 3.6470 40 1 8.1211 0.9776 1.9060 41 1 7.9656 1.6810 0.2780 42 1 5.7986 1.6712 2.4277 43 1 5.8436 0.6168 0.9940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:19 Heat of formation + Delta-G solvation = -108.241642 kcal Electronic energy + Delta-G solvation = -21907.116106 eV Core-core repulsion = 18758.407238 eV Total energy + Delta-G solvation = -3148.708868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.81927 -40.29729 -37.77332 -36.91671 -34.46487 -32.54901 -31.37628 -30.39106 -28.80404 -27.06280 -25.95772 -24.88462 -23.36092 -22.18357 -20.92733 -19.97489 -18.81311 -18.36319 -17.79095 -17.37936 -16.62697 -16.55184 -16.09193 -15.33523 -15.10259 -14.97187 -14.62770 -14.37887 -14.20725 -13.90054 -13.42096 -13.29940 -13.16220 -12.96045 -12.91817 -12.84079 -12.67830 -12.59323 -12.42480 -12.11073 -11.97002 -11.81842 -11.78365 -11.60062 -11.25858 -11.04902 -10.76941 -10.53408 -10.34744 -9.25050 -8.04506 -6.18047 1.11068 1.40789 1.43524 1.54130 1.59941 2.45727 2.88128 3.21834 3.70907 3.86827 3.96430 4.05791 4.10525 4.29745 4.30510 4.32598 4.41452 4.51892 4.59745 4.68310 4.69850 4.70140 4.78808 4.82016 4.87200 4.94913 4.99052 5.07103 5.19889 5.25856 5.31197 5.39772 5.40286 5.49781 5.63034 5.70905 5.95742 6.01540 6.08536 6.25594 6.45964 6.74912 6.95165 7.49956 8.98924 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039633 B = 0.004081 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.313099 B = 6860.200693 C = 7064.388017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.470 3.530 4 O -0.516 6.516 5 C 0.086 3.914 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.522 5.522 9 C 0.016 3.984 10 C 0.097 3.903 11 C -0.099 4.099 12 C -0.099 4.099 13 C 0.045 3.955 14 C -0.532 4.532 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.916 5.916 18 Si 0.949 3.051 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.281 1.281 22 C -0.095 4.095 23 C -0.138 4.138 24 H 0.064 0.936 25 H 0.132 0.868 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.045 0.955 38 H -0.011 1.011 39 H 0.258 0.742 40 H 0.055 0.945 41 H 0.032 0.968 42 H 0.046 0.954 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.825 -3.689 -7.218 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.313 3.687 4 O -0.404 6.404 5 C -0.024 4.024 6 H 0.099 0.901 7 C -0.198 4.198 8 N -0.247 5.247 9 C -0.132 4.132 10 C -0.010 4.010 11 C -0.137 4.137 12 C -0.137 4.137 13 C 0.027 3.973 14 C -0.570 4.570 15 H 0.068 0.932 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.775 3.225 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.206 1.206 22 C -0.134 4.134 23 C -0.177 4.177 24 H 0.083 0.917 25 H 0.150 0.850 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.007 0.993 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.258 -3.150 -7.382 18.132 hybrid contribution 1.287 -0.578 0.942 1.696 sum -14.972 -3.728 -6.441 16.719 Atomic orbital electron populations 1.23552 0.74659 1.05729 1.02526 1.86512 1.25120 1.32733 1.83796 1.23767 0.91954 0.81331 0.71673 1.90638 1.67353 1.37138 1.45239 1.21328 0.87046 0.93854 1.00159 0.90109 1.21871 1.02844 1.03806 0.91321 1.62138 1.12637 1.32459 1.17453 1.22507 1.00181 1.02064 0.88490 1.21750 0.83891 0.95021 1.00342 1.21521 0.95540 0.96104 1.00513 1.21470 0.93946 0.98521 0.99781 1.18634 0.93303 0.92155 0.93253 1.21674 0.93169 1.12444 1.29695 0.93153 1.25705 1.02642 0.95159 0.95075 1.70031 1.35851 1.17012 1.32742 0.85641 0.81088 0.78070 0.77665 1.19231 1.20967 1.20640 1.21313 0.92784 1.00534 0.98759 1.22141 0.97212 0.98634 0.99675 0.91742 0.84954 0.92186 0.89364 0.91348 0.89928 0.90356 0.91876 0.95060 0.88717 0.92871 0.90939 0.92900 0.93574 0.99260 0.93257 0.92607 0.94887 0.93557 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.37 -8.07 10.57 -51.42 -0.54 -8.62 16 3 C 0.47 12.31 6.17 71.24 0.44 12.75 16 4 O -0.52 -16.13 15.27 21.96 0.34 -15.80 16 5 C 0.09 2.17 2.18 44.17 0.10 2.27 16 6 H 0.08 2.00 6.65 -2.39 -0.02 1.99 16 7 C -0.14 -3.00 8.82 71.98 0.63 -2.37 16 8 N -0.52 -15.14 4.33 -876.20 -3.80 -18.93 16 9 C 0.02 0.45 8.39 127.69 1.07 1.52 16 10 C 0.10 3.05 1.88 44.92 0.08 3.14 16 11 C -0.10 -3.33 5.01 30.59 0.15 -3.18 16 12 C -0.10 -3.97 5.14 30.59 0.16 -3.81 16 13 C 0.04 2.20 2.10 -11.54 -0.02 2.18 16 14 C -0.53 -29.10 8.56 25.60 0.22 -28.88 16 15 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 16 C 0.01 0.69 5.30 84.65 0.45 1.13 16 17 N -0.92 -52.64 11.32 21.45 0.24 -52.39 16 18 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 C -0.10 -4.32 4.98 30.59 0.15 -4.17 16 23 C -0.14 -4.94 4.50 30.59 0.14 -4.80 16 24 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 25 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.78 6.23 -2.39 -0.01 1.77 16 30 H 0.08 2.26 6.09 -2.39 -0.01 2.24 16 31 H 0.06 1.80 6.41 -2.38 -0.02 1.78 16 32 H 0.03 0.90 6.55 -2.39 -0.02 0.88 16 33 H 0.09 2.85 5.95 -2.39 -0.01 2.84 16 34 H 0.05 1.83 6.32 -2.38 -0.02 1.81 16 35 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.06 2.94 6.07 -2.38 -0.01 2.92 16 41 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 1.76 6.49 -2.39 -0.02 1.75 16 43 H 0.06 1.94 6.61 -2.38 -0.02 1.92 16 Total: -1.00 -63.26 326.76 4.01 -59.25 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.98 Total: 13.55 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 4.77 Total: -22.60 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -3.55 Total: -71.33 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.21 Total: -24.41 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -63.26 4.01 -59.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.993 kcal (2) G-P(sol) polarization free energy of solvation -63.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds