Wall clock time and date at job start Mon Mar 30 2020 01:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47163 * 2 1 4 4 C 1.46900 * 110.99984 * 296.54173 * 3 2 1 5 5 C 1.50706 * 109.47252 * 296.13604 * 4 3 2 6 6 O 1.20825 * 119.99622 * 4.25385 * 5 4 3 7 7 O 1.34230 * 119.99738 * 184.25860 * 5 4 3 8 8 C 1.45200 * 116.99231 * 179.97438 * 7 5 4 9 9 C 1.46902 * 111.00099 * 172.58857 * 3 2 1 10 10 C 1.53003 * 109.46836 * 179.97438 * 9 3 2 11 11 C 1.53005 * 109.46804 * 179.97438 * 10 9 3 12 12 C 1.53002 * 109.47034 * 300.00087 * 11 10 9 13 13 C 1.50704 * 109.46888 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99676 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99656 * 179.72685 * 15 13 12 17 17 Si 1.86792 * 120.00302 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47412 * 89.99992 * 17 15 13 19 19 H 1.48510 * 109.47385 * 210.00111 * 17 15 13 20 20 H 1.48500 * 109.47097 * 329.99706 * 17 15 13 21 21 C 1.53002 * 109.47030 * 60.00203 * 12 11 10 22 22 C 1.52990 * 109.47220 * 299.99914 * 9 3 2 23 23 H 1.09004 * 109.47206 * 296.59073 * 1 2 3 24 24 H 1.09001 * 109.47442 * 56.59271 * 1 2 3 25 25 H 1.09003 * 109.47207 * 176.59554 * 1 2 3 26 26 H 1.09003 * 109.47169 * 240.00027 * 2 1 3 27 27 H 1.09002 * 109.47281 * 119.99589 * 2 1 3 28 28 H 1.09006 * 109.47403 * 56.13373 * 4 3 2 29 29 H 1.08996 * 109.47373 * 176.13444 * 4 3 2 30 30 H 1.09009 * 109.47003 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47484 * 299.99255 * 8 7 5 32 32 H 1.08996 * 109.47879 * 59.99792 * 8 7 5 33 33 H 1.09007 * 109.46863 * 60.00133 * 9 3 2 34 34 H 1.08993 * 109.46927 * 60.00743 * 10 9 3 35 35 H 1.08991 * 109.47341 * 299.99785 * 10 9 3 36 36 H 1.08997 * 109.47263 * 180.02562 * 11 10 9 37 37 H 1.09004 * 109.47207 * 60.00114 * 11 10 9 38 38 H 1.08990 * 109.47362 * 300.00067 * 12 11 10 39 39 H 0.97000 * 119.99665 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.47269 * 59.99938 * 21 12 11 41 41 H 1.09000 * 109.47226 * 179.97438 * 21 12 11 42 42 H 1.09000 * 109.47593 * 300.00279 * 22 9 3 43 43 H 1.09006 * 109.47045 * 59.99882 * 22 9 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6174 2.0856 -1.2269 5 6 2.2664 1.4273 -2.4171 6 8 2.9275 0.4270 -2.2682 7 8 2.1100 1.9524 -3.6425 8 6 2.7641 1.2658 -4.7421 9 6 3.4773 1.4280 0.1769 10 6 3.9490 2.8835 0.1710 11 6 5.4672 2.9284 0.3559 12 6 5.8379 2.2775 1.6900 13 6 7.3333 2.3211 1.8718 14 1 7.9567 2.7687 1.1120 15 6 7.9053 1.7895 3.0081 16 7 9.2108 1.8228 3.1643 17 14 6.8270 1.0148 4.3219 18 1 6.6555 -0.4315 4.0321 19 1 7.4691 1.1806 5.6507 20 1 5.4990 1.6794 4.3276 21 6 5.3662 0.8220 1.6958 22 6 3.8487 0.7765 1.5104 23 1 -0.3634 0.4600 0.9190 24 1 -0.3634 0.5658 -0.8579 25 1 -0.3634 -1.0259 -0.0610 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5334 2.0399 -1.3327 29 1 1.9333 3.1273 -1.1707 30 1 2.5580 1.7930 -5.6737 31 1 3.8399 1.2436 -4.5681 32 1 2.3859 0.2458 -4.8101 33 1 3.9584 0.8872 -0.6382 34 1 3.4681 3.4246 0.9858 35 1 3.6845 3.3473 -0.7792 36 1 5.8032 3.9652 0.3521 37 1 5.9486 2.3871 -0.4587 38 1 5.3566 2.8186 2.5045 39 1 9.6133 1.4485 3.9635 40 1 5.8476 0.2807 0.8813 41 1 5.6307 0.3581 2.6461 42 1 3.3677 1.3172 2.3255 43 1 3.5126 -0.2605 1.5142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173341415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:54 Heat of formation + Delta-G solvation = -82.140958 kcal Electronic energy + Delta-G solvation = -22256.294914 eV Core-core repulsion = 19108.717856 eV Total energy + Delta-G solvation = -3147.577057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98551 -38.79196 -36.77836 -35.64184 -32.58005 -31.25971 -30.32814 -29.57964 -28.01622 -26.38572 -24.09104 -22.59166 -21.51046 -21.07018 -19.95301 -19.01492 -17.68836 -16.92629 -16.64518 -16.38632 -15.88065 -15.08772 -14.83144 -14.22233 -14.12101 -13.43890 -13.28236 -13.20709 -13.07653 -12.61418 -12.41409 -12.28656 -12.14267 -11.85414 -11.50657 -11.46334 -11.18873 -11.05590 -10.94081 -10.74382 -10.69624 -10.43214 -10.31897 -9.93558 -9.73436 -9.44853 -8.93982 -8.83492 -8.44988 -8.22169 -6.01225 -3.99418 2.08770 2.65425 3.32307 3.42698 3.45743 3.81315 4.47203 4.73766 4.88016 4.94555 4.95653 5.04341 5.21859 5.23644 5.31464 5.35710 5.41307 5.46863 5.51871 5.78400 5.81764 5.94258 6.00159 6.11874 6.12329 6.17812 6.21567 6.30320 6.33194 6.42709 6.59576 6.72390 6.76516 6.96095 7.02764 7.08020 7.20413 7.35580 7.65158 7.66886 7.85638 8.59839 9.03314 9.62241 11.12336 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.005479 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.033628 B = 5109.136929 C = 5767.481448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.023 3.977 3 N -0.505 5.505 4 C 0.054 3.946 5 C 0.427 3.573 6 O -0.499 6.499 7 O -0.365 6.365 8 C 0.034 3.966 9 C 0.071 3.929 10 C -0.114 4.114 11 C -0.096 4.096 12 C 0.015 3.985 13 C -0.511 4.511 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.299 1.299 20 H -0.264 1.264 21 C -0.118 4.118 22 C -0.110 4.110 23 H 0.062 0.938 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.027 0.973 39 H 0.262 0.738 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.686 -1.098 -11.316 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 N -0.227 5.227 4 C -0.076 4.076 5 C 0.268 3.732 6 O -0.387 6.387 7 O -0.281 6.281 8 C -0.060 4.060 9 C -0.036 4.036 10 C -0.152 4.152 11 C -0.134 4.134 12 C -0.004 4.004 13 C -0.549 4.549 14 H 0.090 0.910 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.227 1.227 20 H -0.189 1.189 21 C -0.156 4.156 22 C -0.147 4.147 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.542 -1.220 -10.781 21.483 hybrid contribution 0.096 -1.134 -0.075 1.141 sum -18.446 -2.355 -10.856 21.532 Atomic orbital electron populations 1.21848 0.95427 1.01337 1.02046 1.22468 0.95173 0.89485 1.03252 1.62645 1.14712 1.16068 1.29322 1.22365 1.01572 1.00638 0.83066 1.25820 0.78912 0.83433 0.85010 1.90615 1.37690 1.25171 1.85198 1.86555 1.69070 1.55330 1.17163 1.23222 0.97990 0.97553 0.87260 1.22011 0.84779 0.97704 0.99131 1.21741 0.98251 0.94717 1.00470 1.21408 0.92068 1.00553 0.99383 1.19145 0.96770 0.91036 0.93450 1.21102 0.89972 1.38470 1.05362 0.91024 1.25032 0.94747 0.95604 0.97955 1.69913 1.09757 1.46524 1.28150 0.86832 0.81069 0.79683 0.80583 1.20742 1.22720 1.18876 1.21942 0.92276 1.00838 1.00499 1.21652 0.98112 0.98953 0.96018 0.91867 0.93185 0.92458 0.92036 0.89876 0.86568 0.86105 0.88347 0.91817 0.92188 0.91219 0.91453 0.93647 0.92492 0.93051 0.95483 0.92805 0.92402 0.93492 0.91922 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.87 37.16 0.37 -1.11 16 2 C 0.02 0.30 5.18 -3.83 -0.02 0.28 16 3 N -0.50 -6.87 4.60 -228.08 -1.05 -7.92 16 4 C 0.05 0.61 5.26 -4.97 -0.03 0.58 16 5 C 0.43 5.56 7.32 36.01 0.26 5.82 16 6 O -0.50 -7.92 11.36 -18.75 -0.21 -8.14 16 7 O -0.37 -4.25 10.57 -39.26 -0.41 -4.67 16 8 C 0.03 0.31 10.55 101.05 1.07 1.38 16 9 C 0.07 1.17 1.52 -67.72 -0.10 1.07 16 10 C -0.11 -1.89 4.84 -26.73 -0.13 -2.02 16 11 C -0.10 -1.94 5.14 -26.73 -0.14 -2.08 16 12 C 0.01 0.35 1.70 -91.77 -0.16 0.19 16 13 C -0.51 -14.58 9.14 -34.44 -0.31 -14.89 16 14 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 15 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 16 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 17 Si 0.89 22.49 24.37 -169.99 -4.14 18.35 16 18 H -0.28 -6.95 6.87 56.52 0.39 -6.56 16 19 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 20 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 21 C -0.12 -2.61 4.68 -26.76 -0.13 -2.73 16 22 C -0.11 -2.01 4.99 -26.76 -0.13 -2.14 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.44 6.24 -51.93 -0.32 0.12 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.89 5.49 -51.93 -0.28 0.60 16 27 H 0.08 1.12 5.94 -51.93 -0.31 0.81 16 28 H 0.12 1.02 6.14 -51.93 -0.32 0.70 16 29 H 0.12 1.25 6.23 -51.93 -0.32 0.93 16 30 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.07 1.30 5.62 -51.93 -0.29 1.00 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.04 0.66 6.34 -51.93 -0.33 0.33 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.05 1.10 3.27 -51.93 -0.17 0.94 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.86 6.25 -51.93 -0.32 0.53 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -32.04 317.41 -6.68 -38.72 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.88 Total: 0.08 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 0.45 Total: -13.76 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.28 Total: -35.38 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.63 Total: -12.80 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.14 Total: 18.35 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.04 -6.68 -38.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173341415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.417 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds