Wall clock time and date at job start Mon Mar 30 2020 01:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47165 * 2 1 4 4 C 1.34228 * 116.99849 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00291 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99781 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.46872 * 179.97438 * 6 4 3 8 8 H 1.08999 * 110.43384 * 52.46370 * 7 6 4 9 9 C 1.54268 * 110.60199 * 289.84180 * 7 6 4 10 10 C 1.53873 * 106.59675 * 217.65487 * 9 7 6 11 11 C 1.54264 * 106.60152 * 0.02562 * 10 9 7 12 12 H 1.08998 * 110.49036 * 264.93341 * 11 10 9 13 13 N 1.46903 * 110.48958 * 142.28692 * 11 10 9 14 14 C 1.46892 * 111.00042 * 90.22257 * 13 11 10 15 15 C 1.53002 * 109.47236 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.47191 * 180.02562 * 15 14 13 17 17 H 1.07992 * 119.99724 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99621 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00393 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99728 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47197 * 89.99685 * 20 18 16 22 22 H 1.48501 * 109.47421 * 209.99454 * 20 18 16 23 23 H 1.48504 * 109.47341 * 329.99610 * 20 18 16 24 24 C 1.54889 * 110.48251 * 174.99970 * 7 6 4 25 25 H 1.09001 * 109.47498 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47575 * 300.00237 * 1 2 3 27 27 H 1.08999 * 109.47011 * 59.99897 * 1 2 3 28 28 H 1.08994 * 109.47162 * 240.00149 * 2 1 3 29 29 H 1.09000 * 109.46915 * 119.99556 * 2 1 3 30 30 H 1.09007 * 109.46914 * 60.00163 * 6 4 3 31 31 H 1.08995 * 109.47242 * 300.00320 * 6 4 3 32 32 H 1.08999 * 110.03152 * 336.94354 * 9 7 6 33 33 H 1.08994 * 110.02899 * 98.37081 * 9 7 6 34 34 H 1.09001 * 110.03473 * 240.71407 * 10 9 7 35 35 H 1.09005 * 110.03108 * 119.28164 * 10 9 7 36 36 H 1.00905 * 110.99694 * 326.26945 * 13 11 10 37 37 H 1.08999 * 109.47594 * 300.00354 * 14 13 11 38 38 H 1.08998 * 109.46935 * 60.00366 * 14 13 11 39 39 H 1.08999 * 109.47075 * 300.00619 * 15 14 13 40 40 H 1.08998 * 109.46902 * 60.00293 * 15 14 13 41 41 H 0.96998 * 120.00374 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.75622 * 38.44441 * 24 7 6 43 43 H 1.09003 * 110.92015 * 275.14051 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0014 8 1 5.7968 2.2153 -0.8077 9 6 5.9638 2.3404 1.3606 10 6 7.2537 3.1213 1.6675 11 6 7.4769 4.0859 0.4845 12 1 8.1525 3.6426 -0.2470 13 7 8.0052 5.3710 0.9615 14 6 9.4739 5.3608 0.9836 15 6 9.9859 6.7125 1.4853 16 6 11.4927 6.7023 1.5073 17 1 12.0313 5.8201 1.1944 18 6 12.1836 7.8193 1.9270 19 7 11.5277 8.8937 2.3076 20 14 14.0513 7.8063 1.9551 21 1 14.5693 8.2827 0.6474 22 1 14.5364 8.7021 3.0356 23 1 14.5331 6.4239 2.2045 24 6 6.0657 4.2723 -0.1256 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.5843 3.4701 0.8896 31 1 3.5852 3.4690 -0.8904 32 1 5.2212 2.5262 2.1365 33 1 6.1792 1.2739 1.2970 34 1 8.0951 2.4337 1.7530 35 1 7.1370 3.6862 2.5924 36 1 7.6315 5.6007 1.8702 37 1 9.8219 4.5711 1.6494 38 1 9.8512 5.1798 -0.0229 39 1 9.6379 7.5025 0.8198 40 1 9.6087 6.8931 2.4918 41 1 12.0137 9.6796 2.6025 42 1 5.4897 4.9978 0.4488 43 1 6.1333 4.5750 -1.1705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173637600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:02 Heat of formation + Delta-G solvation = -119.822851 kcal Electronic energy + Delta-G solvation = -20119.202369 eV Core-core repulsion = 16969.991302 eV Total energy + Delta-G solvation = -3149.211067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.79241 -38.69157 -36.87008 -34.99069 -32.92208 -32.20216 -31.00170 -29.17788 -27.81901 -25.59800 -23.72202 -23.29954 -21.44908 -20.72304 -20.07104 -19.65112 -17.85037 -17.03463 -16.55572 -16.27700 -15.84441 -14.96107 -14.66602 -14.41280 -14.17295 -13.76078 -13.39569 -13.32565 -13.21713 -12.75202 -12.51541 -12.24785 -12.14197 -11.95679 -11.71527 -11.38529 -11.09309 -11.03465 -10.89676 -10.89563 -10.85304 -10.59490 -10.57331 -10.50915 -10.31475 -9.97019 -9.31630 -9.11727 -8.33417 -7.72078 -5.97853 -4.00218 2.00327 2.39894 3.33523 3.39468 3.42832 4.32188 4.43154 4.51103 4.52538 4.56705 4.61889 4.76315 4.87133 5.09042 5.11037 5.18952 5.28599 5.36423 5.38031 5.39162 5.55907 5.57374 5.63381 5.69398 5.80607 5.84672 5.99907 6.10812 6.21222 6.27396 6.37326 6.41189 6.43438 6.50326 7.01616 7.53643 7.55079 7.76626 7.86577 8.00934 8.11740 8.46360 9.07154 9.63400 11.13566 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.072569 B = 0.002421 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.744553 B =11561.391120 C =11725.556864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.460 3.540 5 O -0.505 6.505 6 C -0.106 4.106 7 C -0.084 4.084 8 H 0.083 0.917 9 C -0.112 4.112 10 C -0.153 4.153 11 C 0.084 3.916 12 H 0.078 0.922 13 N -0.685 5.685 14 C 0.066 3.934 15 C 0.025 3.975 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.105 4.105 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.337 0.663 37 H 0.015 0.985 38 H 0.057 0.943 39 H 0.025 0.975 40 H 0.013 0.987 41 H 0.260 0.740 42 H 0.074 0.926 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.608 -15.782 -4.302 27.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.303 3.697 5 O -0.392 6.392 6 C -0.143 4.143 7 C -0.103 4.103 8 H 0.102 0.898 9 C -0.150 4.150 10 C -0.193 4.193 11 C -0.027 4.027 12 H 0.096 0.904 13 N -0.314 5.314 14 C -0.062 4.062 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.143 4.143 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.043 0.957 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.398 -15.609 -4.847 26.926 hybrid contribution 1.233 -0.743 0.888 1.691 sum -20.166 -16.352 -3.960 26.262 Atomic orbital electron populations 1.21808 0.92650 1.02960 1.03565 1.23004 0.95354 0.80377 1.02565 1.86521 1.24992 1.32302 1.84193 1.23966 0.80292 0.93249 0.72184 1.90668 1.60286 1.43283 1.44943 1.21555 0.96460 0.90364 1.05935 1.21874 0.91001 0.98181 0.99210 0.89832 1.22117 0.96943 1.00119 0.95844 1.22925 0.97569 0.99280 0.99519 1.22388 0.95596 0.89089 0.95670 0.90384 1.60625 1.09399 1.28788 1.32608 1.22170 0.84345 1.00105 0.99614 1.19075 0.95111 0.90850 0.96256 1.21187 0.91772 0.99183 1.43842 0.92783 1.25006 0.98420 0.95593 0.95407 1.69970 1.35354 1.03474 1.44471 0.86589 0.85818 0.77862 0.77674 1.20641 1.21237 1.19953 1.22517 0.95820 0.94543 1.01435 0.90278 0.91444 0.91453 0.91296 0.91287 0.87514 0.87514 0.92407 0.91454 0.92044 0.91688 0.84515 0.96680 0.92452 0.95680 0.96862 0.93019 0.90768 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.29 37.16 0.38 -0.38 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.36 -3.46 10.22 -39.25 -0.40 -3.86 16 4 C 0.46 4.80 7.77 36.01 0.28 5.08 16 5 O -0.50 -6.63 14.76 -18.75 -0.28 -6.90 16 6 C -0.11 -0.90 5.21 -27.88 -0.15 -1.04 16 7 C -0.08 -0.87 2.44 -88.96 -0.22 -1.09 16 8 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 9 C -0.11 -1.29 5.58 -25.61 -0.14 -1.43 16 10 C -0.15 -2.01 6.50 -25.62 -0.17 -2.18 16 11 C 0.08 1.20 3.18 -66.06 -0.21 0.99 16 12 H 0.08 1.18 7.83 -51.93 -0.41 0.77 16 13 N -0.68 -12.12 6.36 -104.99 -0.67 -12.79 16 14 C 0.07 1.40 5.48 -3.83 -0.02 1.38 16 15 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 16 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -27.14 13.29 55.43 0.74 -26.41 16 20 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.10 -1.22 6.00 -24.75 -0.15 -1.37 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.52 8.13 -51.93 -0.42 0.09 16 29 H 0.07 0.53 8.13 -51.93 -0.42 0.10 16 30 H 0.11 0.78 7.96 -51.92 -0.41 0.36 16 31 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.62 7.72 -51.93 -0.40 0.22 16 33 H 0.07 0.84 7.77 -51.93 -0.40 0.43 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.86 7.52 -51.93 -0.39 0.47 16 36 H 0.34 5.77 8.06 -39.29 -0.32 5.46 16 37 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 39 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -31.91 350.43 -8.84 -40.74 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.77 Total: -0.36 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -0.72 Total: -12.58 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.07 Total: -39.20 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.68 Total: -10.76 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.91 -8.84 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173637600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.081 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds